CA588029

Overview
NameCA588029
Unique NameCA588029
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length475
Libraries
Library NameType
Washington navel orange leaf axil budcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7794 contig Csv1_Contig7794:216..690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CA588029 vs. ExPASy Swiss-Prot
Match: RRP3_EUGMY (Probable 30S ribosomal protein 3, chloroplastic OS=Euglena myxocylindracea GN=ycf65 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.066e-14
Identity = 35/75 (46.67%), Postives = 48/75 (64.00%), Query Frame = 1 
Query:   70 KFIW----MEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQ 282
            KF+W    +E  I + LDQ +    T P+++YFFWP+ DAW+EL   LESKPWI+    I +LN  TD+IN W +
Sbjct:    3 KFVWKVVCLENKIAICLDQQLADK-TSPVTEYFFWPQSDAWDELNKLLESKPWITLSNRIFVLNILTDLINYWDE 76
The following BLAST results are available for this feature:
BLAST of CA588029 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RRP3_EUGMY6.066e-1446.67Probable 30S ribosomal protein 3, chloroplastic OS... [more]

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Properties
Property NameValue
Genbank descriptionGS1410 Washington navel orange leaf axil bud Citrus sinensis cDNA clone DD3.2 5 similar to plastid-specific ribosomal protein [Spinacia oleracea] (AF239218), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CA588029 ID=CA588029; Name=CA588029; organism=Citrus sinensis; type=EST; length=475bp
GCAACCCCAGTAGAAACTAAGAAGGCGGGGGTGTCAGTGAAGCAATTGGA
GAAGCCAAGGCTGGTATTGAAGTTTATATGGATGGAGAAGAACATTGGTC
TAGCTCTTGACCAGACGATACCTGGGTATGGCACCATTCCTTTGAGTCAA
TACTTCTTTTGGCCGAGAAAAGATGCATGGGAAGAGCTCAAGACAACTCT
TGAGAGCAAACCCTGGATTTCCCAGAAAATGATGATTATACTTCTAAATC
AGGCCACTGATATTATCAATTTGTGGCAGCAGAGCGGTGGCAATCTTACT
ACTTAGTTGGATGAAAATTCCGGTTTCTCCGTGAGTTCTCATCGTTTTTG
TATTTCAGTTATTGGATTTGATTTGTATAATTGAAACCTTGTTCATATCT
GCATTACATCGGACACGAGTTGGCTCTGTAATTTGGTTGGTGTTGGCAAA
TTTTTTAATTAATGGGCGTAATGAA
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