CA588030

Overview
NameCA588030
Unique NameCA588030
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Washington navel orange leaf axil budcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12567 contig Csv1_Contig12567:811..1595. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CA588030 vs. ExPASy Swiss-Prot
Match: THI4_METTP (Putative thiazole biosynthetic enzyme OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=Mthe_1121 PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.089e-12
Identity = 43/107 (40.19%), Postives = 57/107 (53.27%), Query Frame = 3
Query:    3 PNVMEAKVVVSSCGHDGPFGATGVKRLKSI-----GMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 308
            P  + A+VV+   GHD        K++        G+I E P   AL     E  +V  TREV PG+IV GM    +   PRMGP FG M++SG+KAA +AL+ L Q
Sbjct:  157 PLAIRARVVIDGTGHDAAVCRVVQKKIPGAIVGESGVIGEKPMWAAL----GEKIVVDATREVYPGLIVAGMAATTVAAGPRMGPIFGGMLLSGEKAASIALEKLAQ 259          
BLAST of CA588030 vs. ExPASy Swiss-Prot
Match: THI4_METVS (Putative thiazole biosynthetic enzyme OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=Mevan_0663 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.857e-12
Identity = 39/102 (38.24%), Postives = 57/102 (55.88%), Query Frame = 3
Query:    3 PNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 308
            P  + AK V+ S GHD    +T  ++ K +G+  EVPG K++     E+++ R TRE+ PG+ V GM         RMG  FG M +SG+K A L L+ L +
Sbjct:  162 PITISAKYVIDSTGHDASVVSTLARKNKDLGI--EVPGEKSMWAEKGENSLTRNTREIFPGLFVCGMTANAYHAGYRMGAIFGGMYLSGKKCAELILEKLNK 261          
BLAST of CA588030 vs. ExPASy Swiss-Prot
Match: THI4_HALWD (Putative thiazole biosynthetic enzyme OS=Haloquadratum walsbyi (strain DSM 16790) GN=HQ1276A PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.425e-12
Identity = 44/125 (35.20%), Postives = 66/125 (52.80%), Query Frame = 3
Query:    3 PNVMEAKVVVSSCGHD----------GPFGATGVKRLK--SIGMIE-----------EVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 308
            P  +E+ +VV S GHD          G   A G++     + GM             + PG  ++ ++ +ED +V  T  V PG++ TGM VA ++G PRMGPTFGAM++SG++ A   L  LG+
Sbjct:  168 PVAVESDLVVDSTGHDAVVISKLSERGVLNAPGIEHANEHNTGMDNTADDEYGAPGHDSPGHDSMWVSRSEDQVVEHTGVVHPGVVATGMAVATVEGLPRMGPTFGAMLLSGKRGAQACLNELGR 292          
BLAST of CA588030 vs. ExPASy Swiss-Prot
Match: THI4_SULSO (Putative thiazole biosynthetic enzyme OS=Sulfolobus solfataricus GN=SSO0436 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.137e-12
Identity = 38/100 (38.00%), Postives = 56/100 (56.00%), Query Frame = 3
Query:    3 PNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 302
            P  + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V  T +V  G+  TGM V E+ G PRMGP FGAM++SG+  A    K L
Sbjct:  163 PIFISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYATGMAVTEVKGLPRMGPIFGAMVLSGKAVAGEITKDL 260          
BLAST of CA588030 vs. ExPASy Swiss-Prot
Match: THI4_METMP (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis GN=MMP1352 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.403e-12
Identity = 40/100 (40.00%), Postives = 56/100 (56.00%), Query Frame = 3
Query:    3 PNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 302
            P  + AK V+ S GHD     T  ++ K +G+  EVPG K++  +  E+++ R TREV PG+ V GM         RMG  FG M +SG+K A L L+ L
Sbjct:  162 PITISAKYVIDSTGHDASVINTLARKNKDLGI--EVPGEKSMWADKGENSLTRNTREVFPGLYVCGMAANAYHAGYRMGAIFGGMYLSGKKCAELILEKL 259          
BLAST of CA588030 vs. ExPASy Swiss-Prot
Match: THI4_SULIY (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=YG5714_1786 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.217e-12
Identity = 37/100 (37.00%), Postives = 55/100 (55.00%), Query Frame = 3
Query:    3 PNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 302
            P  + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V  T +V  G+   GM V E+ G PRMGP FGAM++SG+  A    K L
Sbjct:  163 PIFISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKAVAEEITKDL 260          
BLAST of CA588030 vs. ExPASy Swiss-Prot
Match: THI4_SULIM (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=M1425_1670 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.217e-12
Identity = 37/100 (37.00%), Postives = 55/100 (55.00%), Query Frame = 3
Query:    3 PNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 302
            P  + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V  T +V  G+   GM V E+ G PRMGP FGAM++SG+  A    K L
Sbjct:  163 PIFISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKAVAEEITKDL 260          
BLAST of CA588030 vs. ExPASy Swiss-Prot
Match: THI4_SULIL (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=LS215_1798 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.217e-12
Identity = 37/100 (37.00%), Postives = 55/100 (55.00%), Query Frame = 3
Query:    3 PNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 302
            P  + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V  T +V  G+   GM V E+ G PRMGP FGAM++SG+  A    K L
Sbjct:  163 PIFISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKAVAEEITKDL 260          
BLAST of CA588030 vs. ExPASy Swiss-Prot
Match: THI4_SULIK (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=M164_1717 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.217e-12
Identity = 37/100 (37.00%), Postives = 55/100 (55.00%), Query Frame = 3
Query:    3 PNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 302
            P  + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V  T +V  G+   GM V E+ G PRMGP FGAM++SG+  A    K L
Sbjct:  163 PIFISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKAVAEEITKDL 260          
BLAST of CA588030 vs. ExPASy Swiss-Prot
Match: THI4_SULIA (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain M.16.27) GN=M1627_1786 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.217e-12
Identity = 37/100 (37.00%), Postives = 55/100 (55.00%), Query Frame = 3
Query:    3 PNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 302
            P  + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V  T +V  G+   GM V E+ G PRMGP FGAM++SG+  A    K L
Sbjct:  163 PIFISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKAVAEEITKDL 260          
The following BLAST results are available for this feature:
BLAST of CA588030 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
THI4_METTP1.089e-1240.19Putative thiazole biosynthetic enzyme OS=Methanosa... [more]
THI4_METVS1.857e-1238.24Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_HALWD2.425e-1235.20Putative thiazole biosynthetic enzyme OS=Haloquadr... [more]
THI4_SULSO4.137e-1238.00Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_METMP5.403e-1240.00Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_SULIY9.217e-1237.00Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_SULIM9.217e-1237.00Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_SULIL9.217e-1237.00Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_SULIK9.217e-1237.00Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_SULIA9.217e-1237.00Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]

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Properties
Property NameValue
Genbank descriptionGS1598 Washington navel orange leaf axil bud Citrus sinensis cDNA clone DD15.2(98) 5 similar to thiamin biosynthesis protein thi1 [Citrus sinensis](CAB05370), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CA588030 ID=CA588030; Name=CA588030; organism=Citrus sinensis; type=EST; length=786bp
ATCCCAATGTAATGGAAGCGAAGGTGGTTGTGAGCTCTTGTGGCCATGAT
GGGCCTTTTGGGGCCACTGGAGTAAAGAGGTTGAAGAGTATCGGAATGAT
TGAGGAAGTGCCTGGAATGAAGGCACTGGACATGAACTCTGCAGAAGATG
CTATTGTGAGGCTGACCAGGGAGGTTGTGCCTGGTATGATAGTTACCGGC
ATGGAAGTTGCCGAGATTGATGGTGCTCCTCGAATGGGGCCAACATTTGG
AGCAATGATGATATCGGGGCAGAAGGCTGCGCATTTGGCGTTGAAGTCAC
TGGGCCAGCCGAATGCATTAGACGGTACATATGTGGGAGGCGTTCACCCT
GAGCTGATCTTAGCTGCAGCTGATTCTGCTGAGACTGCTGATGCTTAATT
TGGTAATAACAGGCATCATCACTCATCAGCTGTGTGCATGCAAATAAACT
CTGGCAAAAAAGTAGTTGTATTTAGGTGGTTGTGATGGATGGTTGATGCG
AATAATGAGATAATGTTGTGAGGTTTTGTGAATAAAGTGTTTGTTTCCGG
TCCATCATGGAACCTTTAATTTTAATTTCTTTCTCCTCTTGTAAGAAACC
GTTGTGAGTTTTTCGGAGGTGAATTTGCAGTTGCGTATCTAGTCCTTGTT
ATCTGTGTTATGTGTAGGACTGCCCCTTGGGCTGTTCCCTTTTCCTTGCT
TTGTATGTTTATAACTTGAGGCATCAGCCAATGGGGAAAAGTGCTGATGT
GATTAAAGATCAATGATGAAGATCTGAGCTTACCTC
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