CA588030

Overview
NameCA588030
Unique NameCA588030
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Washington navel orange leaf axil budcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12567 contig Csv1_Contig12567:811..1595. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CA588030 vs. ExPASy Swiss-Prot
Match: THI4_PYRIL (Putative thiazole biosynthetic enzyme OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=Pisl_1998 PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 9.217e-12
Identity = 37/100 (37.00%), Postives = 56/100 (56.00%), Query Frame = 3
Query:    3 PNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 302
            P   +AK V+ + GHD    +   +++  +G+  EV G K+     +E  +V  T  V PG+ V GM V  + G PRMGP FG M++SG++AA +  K L
Sbjct:  155 PLYTQAKAVLDATGHDAEVISIAARKVPELGI--EVRGEKSAWAEVSEKLVVEHTGRVAPGLYVAGMAVCTVHGLPRMGPIFGGMLLSGRRAAEIIHKDL 252          
BLAST of CA588030 vs. ExPASy Swiss-Prot
Match: THI4_METM7 (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=MmarC7_0597 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.572e-11
Identity = 38/100 (38.00%), Postives = 55/100 (55.00%), Query Frame = 3
Query:    3 PNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 302
            P  + AK V+ S GHD     T  ++ K +G+  EVPG K++     E+++ R TRE+ PG+ V GM         RMG  FG M +SG+K A + L+ L
Sbjct:  162 PLTISAKYVIDSTGHDASAVHTLARKNKDLGI--EVPGEKSMWAEKGENSLTRNTREIFPGLYVCGMAANAYHAGYRMGAIFGGMYLSGKKCAEMILEKL 259          
BLAST of CA588030 vs. ExPASy Swiss-Prot
Match: THI4_PYRCJ (Putative thiazole biosynthetic enzyme OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=Pcal_1555 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.682e-11
Identity = 34/102 (33.33%), Postives = 56/102 (54.90%), Query Frame = 3
Query:    3 PNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 308
            P   +AK V+ + GHD    +   +++  +G+  ++ G K+     +E  +V  T  V PG+ V G+ V  + G PRMGP FG M++SG+K A +  K L +
Sbjct:  155 PLYTQAKAVIDATGHDAEVVSVAARKVPELGL--QLQGEKSAWSEVSEKLVVEHTGRVAPGLYVAGIAVCAVYGLPRMGPIFGGMLMSGRKVAEVVAKDLAE 254          
BLAST of CA588030 vs. ExPASy Swiss-Prot
Match: THI4_NATPD (Putative thiazole biosynthetic enzyme OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=NP5174A PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.682e-11
Identity = 45/124 (36.29%), Postives = 64/124 (51.61%), Query Frame = 3
Query:    3 PNVMEAKVVVSSCGHD----------GPFGATGVKRLK--SIGMIE-----------EVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLG 305
            P  +EA +V+ + GHD          G   A G++     + GM +           + PG  ++ +  +EDA+V  T     G+IVTGM  A   G PRMGPTFGAM++SG++AA  AL  LG
Sbjct:  169 PIAVEADLVIDATGHDAVAVSKLQERGVLNAPGIEHADEHNTGMDQTGDDSYGAPGHDSPGHDSMWVGQSEDAVVEHTGLAHEGLIVTGMATATTYGLPRMGPTFGAMLLSGKRAAQAALDELG 292          
BLAST of CA588030 vs. ExPASy Swiss-Prot
Match: THI4_METM6 (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=MmarC6_1321 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.682e-11
Identity = 37/100 (37.00%), Postives = 55/100 (55.00%), Query Frame = 3
Query:    3 PNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 302
            P  + AK V+ S GHD     T  ++ K +G+  EVPG K++     E+++ R TRE+ PG+ V GM         RMG  FG M +SG+K A + L+ +
Sbjct:  162 PLTISAKYVIDSTGHDASAVHTLARKNKDLGI--EVPGEKSMWAEKGENSLTRNTREIFPGLYVCGMAANAYHAGYRMGAIFGGMYLSGKKCAEMILEKM 259          
BLAST of CA588030 vs. ExPASy Swiss-Prot
Match: THI4_METM5 (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=MmarC5_0226 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.682e-11
Identity = 37/100 (37.00%), Postives = 55/100 (55.00%), Query Frame = 3
Query:    3 PNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 302
            P  + AK V+ S GHD     T  ++ K +G+  EVPG K++     E+++ R TRE+ PG+ V GM         RMG  FG M +SG+K A + L+ +
Sbjct:  162 PLTISAKYVIDSTGHDASAVHTLARKNKDLGI--EVPGEKSMWAEKGENSLTRNTREIFPGLYVCGMAANAYHAGYRMGAIFGGMYLSGKKCAEMILEKM 259          
BLAST of CA588030 vs. ExPASy Swiss-Prot
Match: THI4_HALMA (Putative thiazole biosynthetic enzyme OS=Haloarcula marismortui GN=rrnAC1782 PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.682e-11
Identity = 43/124 (34.68%), Postives = 63/124 (50.81%), Query Frame = 3
Query:    3 PNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIE------------------------EVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 302
            P  +EA +V+ + GHD    A  VK+L   G++                         + PG  ++ +  +EDA+V  T     G++VTGM  A   G PRMGPTFGAM++SG++AA +AL  L
Sbjct:  172 PIAVEADLVIDATGHD----AMAVKKLDERGVLNAPGLEDEASGMDQTDDDTYGAPGHDSPGHDSMWVGESEDAVVEHTGLAHDGLVVTGMATATTYGLPRMGPTFGAMLVSGKRAAQVALDEL 291          
BLAST of CA588030 vs. ExPASy Swiss-Prot
Match: THI4_PYRAE (Putative thiazole biosynthetic enzyme OS=Pyrobaculum aerophilum GN=PAE0175 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.502e-11
Identity = 35/100 (35.00%), Postives = 55/100 (55.00%), Query Frame = 3
Query:    3 PNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 302
            P   +AK V+ + GHD    +   +++  +G+  +V G K+     +E  +V  T  V PG+ V G+ V  + G PRMGP FG M++SG+K A +  K L
Sbjct:  155 PLYTQAKAVIDATGHDAEVVSVAARKVPELGI--QVVGEKSAWSEVSEKLVVEHTGRVAPGLYVAGIAVCAVYGLPRMGPIFGGMLMSGKKVAEVVYKDL 252          
BLAST of CA588030 vs. ExPASy Swiss-Prot
Match: THI4_SULIN (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=YN1551_1140 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.803e-11
Identity = 36/100 (36.00%), Postives = 54/100 (54.00%), Query Frame = 3
Query:    3 PNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 302
            P  + AK VV + GHD    +   +++  +G++  + G K+     AE+  V  T +V  G+   GM V E+ G PRMGP FGAM++SG+  A    K L
Sbjct:  163 PIFISAKAVVDATGHDAEVISVAARKIPELGIV--IAGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKAVAEEITKDL 260          
The following BLAST results are available for this feature:
BLAST of CA588030 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
THI4_PYRIL9.217e-1237.00Putative thiazole biosynthetic enzyme OS=Pyrobacul... [more]
THI4_METM71.572e-1138.00Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_PYRCJ2.682e-1133.33Putative thiazole biosynthetic enzyme OS=Pyrobacul... [more]
THI4_NATPD2.682e-1136.29Putative thiazole biosynthetic enzyme OS=Natronomo... [more]
THI4_METM62.682e-1137.00Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_METM52.682e-1137.00Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_HALMA2.682e-1134.68Putative thiazole biosynthetic enzyme OS=Haloarcul... [more]
THI4_PYRAE3.502e-1135.00Putative thiazole biosynthetic enzyme OS=Pyrobacul... [more]
THI4_SULIN7.803e-1136.00Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]

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Properties
Property NameValue
Genbank descriptionGS1598 Washington navel orange leaf axil bud Citrus sinensis cDNA clone DD15.2(98) 5 similar to thiamin biosynthesis protein thi1 [Citrus sinensis](CAB05370), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CA588030 ID=CA588030; Name=CA588030; organism=Citrus sinensis; type=EST; length=786bp
ATCCCAATGTAATGGAAGCGAAGGTGGTTGTGAGCTCTTGTGGCCATGAT
GGGCCTTTTGGGGCCACTGGAGTAAAGAGGTTGAAGAGTATCGGAATGAT
TGAGGAAGTGCCTGGAATGAAGGCACTGGACATGAACTCTGCAGAAGATG
CTATTGTGAGGCTGACCAGGGAGGTTGTGCCTGGTATGATAGTTACCGGC
ATGGAAGTTGCCGAGATTGATGGTGCTCCTCGAATGGGGCCAACATTTGG
AGCAATGATGATATCGGGGCAGAAGGCTGCGCATTTGGCGTTGAAGTCAC
TGGGCCAGCCGAATGCATTAGACGGTACATATGTGGGAGGCGTTCACCCT
GAGCTGATCTTAGCTGCAGCTGATTCTGCTGAGACTGCTGATGCTTAATT
TGGTAATAACAGGCATCATCACTCATCAGCTGTGTGCATGCAAATAAACT
CTGGCAAAAAAGTAGTTGTATTTAGGTGGTTGTGATGGATGGTTGATGCG
AATAATGAGATAATGTTGTGAGGTTTTGTGAATAAAGTGTTTGTTTCCGG
TCCATCATGGAACCTTTAATTTTAATTTCTTTCTCCTCTTGTAAGAAACC
GTTGTGAGTTTTTCGGAGGTGAATTTGCAGTTGCGTATCTAGTCCTTGTT
ATCTGTGTTATGTGTAGGACTGCCCCTTGGGCTGTTCCCTTTTCCTTGCT
TTGTATGTTTATAACTTGAGGCATCAGCCAATGGGGAAAAGTGCTGATGT
GATTAAAGATCAATGATGAAGATCTGAGCTTACCTC
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