CB250244

Overview
NameCB250244
Unique NameCB250244
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2173 contig Csv1_Contig2173:102..811. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250244 vs. ExPASy Swiss-Prot
Match: LGUL_SHIFL (Lactoylglutathione lyase OS=Shigella flexneri GN=gloA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.938e-16
Identity = 52/153 (33.99%), Postives = 82/153 (53.59%), Query Frame = 1
Query:  106 TMFRIKDPKVSLDFYSRMLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKAYERFERLGVEFAKKPDGGKLKG----VAFIKDPDDYWIEIFDLKTIGK 552
            TM R+ D + S+DFY+++LGM LL+  + PE K+SL F+GY                   + A IELT+NWG +       Y  G +    +GHI ++VD+  +A E+  + G    +  + G +KG    +AF++DPD Y IE+ + K  G+
Sbjct:    6 TMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFVGYGPET---------------EEAVIELTYNWGVDK------YELGTA----YGHIALSVDNAAEACEKIRQNGGNVTR--EAGPVKGGTTVIAFVEDPDGYKIELIEEKDAGR 131          
BLAST of CB250244 vs. ExPASy Swiss-Prot
Match: LGUL_ECOLI (Lactoylglutathione lyase OS=Escherichia coli (strain K12) GN=gloA PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.938e-16
Identity = 52/153 (33.99%), Postives = 82/153 (53.59%), Query Frame = 1
Query:  106 TMFRIKDPKVSLDFYSRMLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKAYERFERLGVEFAKKPDGGKLKG----VAFIKDPDDYWIEIFDLKTIGK 552
            TM R+ D + S+DFY+++LGM LL+  + PE K+SL F+GY                   + A IELT+NWG +       Y  G +    +GHI ++VD+  +A E+  + G    +  + G +KG    +AF++DPD Y IE+ + K  G+
Sbjct:    6 TMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFVGYGPET---------------EEAVIELTYNWGVDK------YELGTA----YGHIALSVDNAAEACEKIRQNGGNVTR--EAGPVKGGTTVIAFVEDPDGYKIELIEEKDAGR 131          
BLAST of CB250244 vs. ExPASy Swiss-Prot
Match: LGUL_ECO57 (Lactoylglutathione lyase OS=Escherichia coli O157:H7 GN=gloA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.938e-16
Identity = 52/153 (33.99%), Postives = 82/153 (53.59%), Query Frame = 1
Query:  106 TMFRIKDPKVSLDFYSRMLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKAYERFERLGVEFAKKPDGGKLKG----VAFIKDPDDYWIEIFDLKTIGK 552
            TM R+ D + S+DFY+++LGM LL+  + PE K+SL F+GY                   + A IELT+NWG +       Y  G +    +GHI ++VD+  +A E+  + G    +  + G +KG    +AF++DPD Y IE+ + K  G+
Sbjct:    6 TMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFVGYGPET---------------EEAVIELTYNWGVDK------YELGTA----YGHIALSVDNAAEACEKIRQNGGNVTR--EAGPVKGGTTVIAFVEDPDGYKIELIEEKDAGR 131          
BLAST of CB250244 vs. ExPASy Swiss-Prot
Match: LGUL_VIBPA (Probable lactoylglutathione lyase OS=Vibrio parahaemolyticus GN=gloA PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.093e-13
Identity = 52/157 (33.12%), Postives = 77/157 (49.04%), Query Frame = 1
Query:   82 TNGYFMQQTMFRIKDPKVSLDFYSRMLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKAYERFERLGVEFAKKPDGGKLKG----VAFIKDPDDYWIEIFDLK 540
            +NG  +  TM R+ D   S+ FY+ ++GM LL+  +  E +++L F+GY D +                 A IELT+NWG         Y  G +    FGHI I VDD+Y   +  +  G    +  + G +KG    +AF+KDPD Y IE+   K
Sbjct:    2 SNGRILH-TMLRVGDLDKSIKFYTEVMGMQLLRTNENKEYEYTLAFVGYGDESQG---------------AVIELTYNWGKTE------YDLGTA----FGHIAIGVDDIYATCDAIKAAGGNVTR--EAGPVKGGTTHIAFVKDPDGYMIELIQNK 130          
The following BLAST results are available for this feature:
BLAST of CB250244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
LGUL_SHIFL8.938e-1633.99Lactoylglutathione lyase OS=Shigella flexneri GN=g... [more]
LGUL_ECOLI8.938e-1633.99Lactoylglutathione lyase OS=Escherichia coli (stra... [more]
LGUL_ECO578.938e-1633.99Lactoylglutathione lyase OS=Escherichia coli O157:... [more]
LGUL_VIBPA1.093e-1333.12Probable lactoylglutathione lyase OS=Vibrio paraha... [more]

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Properties
Property NameValue
Genbank descriptionEST0006 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ006 similar to lactolylglutathione lyase (acc# O49818), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250244 ID=CB250244; Name=CB250244; organism=Citrus sinensis; type=EST; length=710bp
CGGTTGCTTTCAATGGCTTCTTCGGAGCCCAAAGAATCGCCCGCTAACAA
TCCGGGTCTTCACACCGCCCGTGATGAAGCTACCAACGGATACTTCATGC
AACAAACGATGTTTCGAATTAAGGACCCCAAAGTTAGTCTTGATTTCTAT
TCTCGTATGTTGGGCATGTCGCTACTAAAGAGGTTGGATTTTCCAGAAAT
GAAATTTAGCCTATACTTTTTGGGCTATGAGGATACTGCATCAGCTCCAG
CTGACCCTGTTGATAGAACTGTTTGGACTTTTGGGAAGCCAGCTACAATT
GAGCTGACTCATAACTGGGGAACTGAAAGTGATCCCGACTTCAAAGGTTA
TCACAATGGGAATTCAGAACCCCGTGGCTTTGGGCACATCGGCATCACTG
TTGATGATGTATATAAGGCATATGAGAGGTTTGAACGTCTAGGAGTGGAA
TTTGCAAAGAAACCAGATGGTGGAAAATTGAAAGGCGTAGCATTCATTAA
AGACCCTGATGACTATTGGATTGAAATCTTTGACCTCAAAACAATTGGAA
AAATTGGTGGTAGCACTTGATATGACATTGCACACTCAGGGAAGGCGGGA
TCCATTCATTGTAGTGTTTGATAAATTCTCTGTTGAATAGAACGTCTTCC
ATGAGACGCATTATGGACTGAAATACGATCGCAAATATGTTTCAAACTCC
GAAAGACTTG
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