CB250257

Overview
NameCB250257
Unique NameCB250257
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig115 contig Csv1_Contig115:1..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: PGLR5_ARATH (Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana GN=At1g80170 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.041e-49
Identity = 94/211 (44.55%), Postives = 133/211 (63.03%), Query Frame = 2
Query:    5 GVKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSSGFARNILFQHALMNNVDNPIIIDQNYCPDNENCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSRNPCTGISLEDVKLSYNNQP--AEASCANADGSASGFILPNSCL 631
            G+KV A   SPNTDGIH+  S G+ I ++ + TGDDC+S+   +T + I N+ CGPGHGISIGSLGK +    V+++TV +   + T NGVRIK+W +  SG    I+F++  MNNV NPIIIDQ YC   + C  Q S + I ++ +  + GTSA++  +K+ CS  +PC  I L+D+ L  +N     E+ C  A GS+SG + P  CL
Sbjct:  215 GLKVIAPATSPNTDGIHISVSRGIVIDNTTVSTGDDCISIVKNSTQISISNIICGPGHGISIGSLGKSKSWEEVRDITVDTAIISDTANGVRIKTW-QGGSGLVSKIIFRNIKMNNVSNPIIIDQYYCDSRKPCANQTSAISIENISFVHVRGTSASKEAIKISCSDSSPCRNILLQDIDLEPSNGDGFTESFCWEAYGSSSGQVYPPPCL 424          
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: ADPG2_ARATH (Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 1.050e-48
Identity = 98/204 (48.04%), Postives = 135/204 (66.18%), Query Frame = 2
Query:    8 VKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSSGFARNILFQHALMNNVDNPIIIDQNYCPDNENCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSRNPCTGISLEDVKLSYNNQPAEASCANADGSASGFILP 619
            V V+A  DSPNTDGIH+  +  + + +S IGTGDDC+S+  G+ N+ I ++ CGPGHGISIGSLG +  +A V  VTV     +GT NGVRIK++ +  SG A NI+FQ+  M+NV NPIIIDQ+YC D   C  + S V++ +V+Y+DI GTSA+E  +  +CS   PC GI L+ V    N +  +A+C NA+    G +LP
Sbjct:  231 VVVTAPADSPNTDGIHITNTQNIRVSESIIGTGDDCISIESGSQNVQINDITCGPGHGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTY-QGGSGTASNIIFQNIQMDNVKNPIIIDQDYC-DKSKCTTEKSAVQVKNVVYRDISGTSASENAITFNCSKNYPCQGIVLDRV----NIKGGKATCTNANVVDKGAVLP 428          
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: PGLR_GOSBA (Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.791e-48
Identity = 92/208 (44.23%), Postives = 128/208 (61.54%), Query Frame = 2
Query:    8 VKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSSGFARNILFQHALMNNVDNPIIIDQNYCPDNENCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSRNPCTGISLEDVKLSYNN-QPAEASCANADGSASGFILPNSC 628
            +K+ A  +SPNTDGIH+  S GV I+ S I TGDDC+S+G G  N+ I+ + CGPGHGISIGSLGK Q E  V+ + +++ T T T NG RIK+W     G    I F+   MNNV +PI+IDQ YCP N+    + S VK+S++ +++I GTSA    +K  CS  +PC  + L D+ + +N  +PA + C N      G + P  C
Sbjct:  188 LKIEAPDESPNTDGIHMGKSEGVNIIASDIKTGDDCISIGDGTKNMVIKEITCGPGHGISIGSLGKFQNEEPVEGIKISNCTITNTSNGARIKTWPGEHGGAVSEIHFEDITMNNVSSPILIDQQYCPWNKCKKNEESKVKLSNISFKNIRGTSALPEAIKFICSGSSPCQNVELADIDIQHNGAEPATSQCLNVKPITIGKLNPIPC 395          
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: PGLR_MEDSA (Polygalacturonase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.161e-47
Identity = 93/202 (46.04%), Postives = 125/202 (61.88%), Query Frame = 2
Query:    5 GVKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSSGF-ARNILFQHALMNNVDNPIIIDQNYCPDNENCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSRNPCTGISLEDVKLSYNNQPAEASCANADGSASG 607
            G  ++A GDSPNTDGIH+  S+ V IL++ IGTGDDCVS+G G+  + ++ V CGPGHG+S+GSLGK   E  V+ +TV + T T T NGVRIK+W          +I F+   M NV NP+IIDQ Y P N+      S +K+S + ++++ GTS T  GV L CSS  PC G+ L +V L +N  P  A C N     +G
Sbjct:  185 GFTITAPGDSPNTDGIHMGKSTDVKILNTNIGTGDDCVSIGDGSKQITVQGVNCGPGHGLSVGSLGKFTTEENVEGITVKNCTLTATDNGVRIKTWPDAPGTITVSDIHFEDITMTNVKNPVIIDQEYYPWNQCSKKNPSKIKLSKISFKNVKGTSGTAEGVVLICSSAVPCDGVELNNVDLKFNGAPTTAKCTNVKPLVTG 386          
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: PGLR2_CRYJA (Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.516e-47
Identity = 97/207 (46.86%), Postives = 132/207 (63.77%), Query Frame = 2
Query:    5 GVKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSSGFARNILFQHALMNNVDNPIIIDQNYCPDNENCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSRNPCTGISLEDVKLSYNNQPAEASCA--NADGSASGFILP 619
            G+ ++A  DSPNTDGI + AS    +  + IGTGDDCV++G G++N+ IE++ CGPGHGISIGSLG+E   A V  V V    F  TQNG+RIK+W +  SG A +I++++  M N +NPI+I+Q YC     C  Q S V+I DV Y++I GTSAT   ++L CS   PC  I L D+ L   +    ASC   NA+G  SG ++P
Sbjct:  221 GISITAPRDSPNTDGIDIFASKNFHLQKNTIGTGDDCVAIGTGSSNIVIEDLICGPGHGISIGSLGRENSRAEVSYVHVNGAKFIDTQNGLRIKTW-QGGSGMASHIIYENVEMINSENPILINQFYCTSASACQNQRSAVQIQDVTYKNIRGTSATAAAIQLKCSDSMPCKDIKLSDISLKLTSGKI-ASCLNDNANGYFSGHVIP 425          
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: PGLR2_CHAOB (Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.516e-47
Identity = 98/207 (47.34%), Postives = 132/207 (63.77%), Query Frame = 2
Query:    2 QGVKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSSGFARNILFQHALMNNVDNPIIIDQNYCPDNENCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSRNPCTGISLEDVKLSY-NNQPAEASCANADGSASGFILP 619
            QG+K+ A  DSPNTDGI + AS    I    IGTGDDC+++G G++N+ I+++ CGPGHGISIGSLG++   A V +V V    F  TQNG+RIK+W +  SG A  I +++  M N +NPI+I+Q YC     C  Q S V+I  V Y++IHGTSAT   ++L CS   PCTGI L +V L   + +PA     NA G  SG ++P
Sbjct:  220 QGLKIKAPRDSPNTDGIDIFASKRFHIEKCVIGTGDDCIAIGTGSSNITIKDLICGPGHGISIGSLGRDNSRAEVSHVHVNRAKFIDTQNGLRIKTW-QGGSGLASYITYENVEMINSENPILINQFYCTSASACQNQRSAVQIQGVTYKNIHGTSATAAAIQLMCSDSVPCTGIQLSNVSLKLTSGKPASCVDKNARGFYSGRLIP 425          
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: PGLR_TOBAC (Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.526e-47
Identity = 99/207 (47.83%), Postives = 125/207 (60.39%), Query Frame = 2
Query:   14 VSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSSGFARNILFQHALMNNVDNPIIIDQNYCPDNENCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSRNPCTGISLEDVKLSYNNQ--PAEASCANADGSASGFILPNSC 628
            VSA  +SPNTDGIHV  SS V I DS   TGDDC+SVG     L+I  V CGPGHGIS+GSLG    E  V  V V + TFT T NGVRIK+W  +  G   ++ F+  ++ NV NP++IDQ YCP N+      S VKIS V +Q+I GTS T+  V L  S   PC GI + D+ ++Y+ +  PA++SC N   S  G   P  C
Sbjct:  182 VSAPANSPNTDGIHVSRSSSVNITDSNFSTGDDCISVGDETEQLYITRVTCGPGHGISVGSLGGNPDEKPVVGVFVRNCTFTNTDNGVRIKTWPASHPGVVNDVHFEDIIVQNVSNPVVIDQVYCPFNKCNKDLPSQVKISKVSFQNIKGTSRTQDAVSLLRSKGVPCEGIEVGDIDITYSGKEGPAKSSCENIKPSLKGKQNPPVC 388          
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: PGLR_PERAE (Polygalacturonase OS=Persea americana PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.526e-47
Identity = 94/192 (48.96%), Postives = 124/192 (64.58%), Query Frame = 2
Query:   14 VSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSSGFARNILFQHALMNNVDNPIIIDQNYCPDNENCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSRNPCTGISLEDVKLSYN-NQPAEASCAN 586
            V+A   SPNTDGIH+  +  + +++S IGTGDDC+S+  G+  +   N+ CGPGHGISIGSLG    EA V  V V       T NG+RIK+W +  SG A+NI FQ+ +M+NV NPIIIDQ YC   + CP Q S VK+S+V Y +I GTSA+EV VK DCS  +PC G  + ++ L  N  +    SC+N
Sbjct:  247 VTAPEHSPNTDGIHITGTQRIHVMNSVIGTGDDCISIESGSKMVIATNITCGPGHGISIGSLGDRNSEAHVSGVLVDGGNLFDTTNGLRIKTW-QGGSGSAKNIKFQNIVMHNVTNPIIIDQYYCDSKDPCPEQESAVKVSNVAYMNIRGTSASEVAVKFDCSKSSPCQGYIVGNINLVGNGGKETTMSCSN 437          
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: PGLR_MALDO (Polygalacturonase OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.526e-47
Identity = 97/203 (47.78%), Postives = 129/203 (63.55%), Query Frame = 2
Query:   14 VSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSSGFARNILFQHALMNNVDNPIIIDQNYCP-DNENCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSRNPCTGISLEDVKLSYNNQPAEASCANADGSASGFILP 619
            V+A  DSPNTDGIHV  +  +TI  S IGTGDDC+S+  G+  +   ++ CGPGHGISIGSLG++  E  V  V V     +GT NG+RIK+W +  SG A NI+FQ+  MN+V NPIIIDQNYC    ++C  Q S V++ +V+YQ+I GTSA+   + L+CS   PC GI L+ V+L    Q   A C N   +  G + P
Sbjct:  261 VTAPEDSPNTDGIHVTNTQNITISSSVIGTGDDCISIVSGSQRVQATDITCGPGHGISIGSLGEDGSEDHVSGVFVNGAKLSGTSNGLRIKTW-KGGSGSATNIVFQNVQMNDVTNPIIIDQNYCDHKTKDCKQQKSAVQVKNVLYQNIRGTSASGDAITLNCSQSVPCQGIVLQSVQL----QNGRAECNNVQPAYKGVVSP 458          
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: PGLR3_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.677e-46
Identity = 97/210 (46.19%), Postives = 133/210 (63.33%), Query Frame = 2
Query:    8 VKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSSGF-ARNILFQHALMNNVDNPIIIDQNYCPDNENCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSRNPCTGISLEDVKLSYN--NQPAEASCANADGSASGFILPNSC 628
            V V+A GDSPNTDGIH+  SSGVTI ++ IG GDDC+S+GPG + + I  V CGPGHGISIGSLG+ + E  V ++ V   T   T NGVRIK++   +S   A  I +++  M +   PIIID  YCP+       AS V + DV +++I GTS+T   V L C+++ PCTG++++DV + Y+  N    A C NA GSA G +   +C
Sbjct:  200 VNVTAPGDSPNTDGIHMGDSSGVTITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTANGVRIKAYEDAASVLTASKIHYENIKMEDSGYPIIIDMKYCPNKLCTANGASKVTVKDVTFKNITGTSSTPEAVNLLCTAKIPCTGVTMDDVNIKYSGTNNKTMAVCKNAKGSAKGCLKELAC 409          
The following BLAST results are available for this feature:
BLAST of CB250257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
PGLR5_ARATH8.041e-4944.55Probable polygalacturonase At1g80170 OS=Arabidopsi... [more]
ADPG2_ARATH1.050e-4848.04Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN... [more]
PGLR_GOSBA1.791e-4844.23Polygalacturonase OS=Gossypium barbadense GN=G9 PE... [more]
PGLR_MEDSA1.161e-4746.04Polygalacturonase OS=Medicago sativa PE=2 SV=1[more]
PGLR2_CRYJA1.516e-4746.86Polygalacturonase OS=Cryptomeria japonica PE=1 SV=... [more]
PGLR2_CHAOB1.516e-4747.34Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=... [more]
PGLR_TOBAC7.526e-4747.83Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2... [more]
PGLR_PERAE7.526e-4748.96Polygalacturonase OS=Persea americana PE=2 SV=1[more]
PGLR_MALDO7.526e-4747.78Polygalacturonase OS=Malus domestica PE=2 SV=1[more]
PGLR3_MAIZE1.677e-4646.19Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionEST0023 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ026 similar to polygalacturonase (acc# BAC22689), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250257 ID=CB250257; Name=CB250257; organism=Citrus sinensis; type=EST; length=715bp
ACAGGGGGTCAAAGTTTCGGCCGCCGGTGACAGCCCAAACACCGATGGCA
TTCATGTTCAAGCATCAAGTGGTGTCACAATTTTGGACAGCAAAATTGGG
ACTGGTGATGATTGTGTATCAGTTGGACCTGGCGCCACCAACTTATGGAT
TGAAAATGTTGCTTGTGGCCCAGGCCATGGGATCAGCATTGGCAGCTTAG
GCAAAGAGCAACAAGAGGCTGGAGTGCAAAATGTGACAGTAACATCTGTG
ACATTTACAGGCACTCAAAATGGAGTGAGGATTAAGTCCTGGGGGAGAAC
AAGCAGTGGATTTGCCAGGAACATTCTTTTCCAACATGCTCTTATGAACA
ATGTCGATAATCCAATCATAATTGATCAAAATTACTGCCCTGACAACGAG
AATTGTCCTGGACAGGCTTCGGGGGTTAAAATCAGTGATGTGATATATCA
AGATATTCATGGAACATCGGCAACGGAAGTTGGAGTAAAGCTCGATTGCA
GTTCAAGGAATCCATGCACTGGAATTAGCTTGGAGGATGTGAAGCTCAGT
TACAATAATCAACCAGCTGAAGCTTCCTGTGCCAACGCTGATGGATCGGC
CTCTGGATTTATTCTGCCAAATAGTTGCTTGAAGACTTGAAGACTTGGAG
TTGTGAAAAGTATTTGAGTAGGAAAAAAAGGCATAGGAAGCCGATCATGA
TTATATAGTTAGTAG
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