CB250257

Overview
NameCB250257
Unique NameCB250257
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: PGLR_BRANA (Polygalacturonase OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.190e-46
Identity = 92/211 (43.60%), Postives = 128/211 (60.66%), Query Frame = 2
Query:    8 VKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSW-GRTSSGFARNILFQHALMNNVDNPIIIDQNYCPDNENCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSRNPCTGISLEDVKLSYN--NQPAEASCANADGSASGFILPNSCL 631
            +K+ A  +SPNTDGIH+    GV IL++KI TGDDC+SVG G  NL IE V CGPGHGIS+GSLG+   E  V ++TV + T  GT NG+RIK+W     +  A  I F+  ++N V NPI+IDQ YCP N+    + S +K+ D+ +++I GTS  +  VKL CS  +PC  + + D+ + Y   + P    C N      G   P +C+
Sbjct:  177 IKIIAPAESPNTDGIHLGRCEGVKILNTKIATGDDCISVGDGMKNLLIEKVVCGPGHGISVGSLGRYGWEQDVTDITVKNCTLEGTSNGLRIKTWPSAACTTTAAGIHFEDIILNKVSNPILIDQEYCPWNQCNKNKPSTIKLVDITFRNIRGTSENKDAVKLLCSKGHPCENVEIGDINIEYTGPDGPPTFECTNVTPKLVGAQNPKACV 387          
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: PGLR3_ARATH (Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.044e-45
Identity = 98/215 (45.58%), Postives = 137/215 (63.72%), Query Frame = 2
Query:    8 VKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSSGFARNILFQHALMNNVDNPIIIDQNY-CPDNENCPG-QASGVKISDVIYQDIHGTSATEVGVKLDCSSRNPCTGISLEDVKL----SYNNQPAEASCANADGSASGFILPNSCLK 634
            ++++A   SPNTDGI V ASS V I D  I TGDDC+++  G +N+ I  + CGPGHGISIGSLGK+ + A V+NV V +  F GT NG RIK+W +  SG+AR I F    ++NV+NPIIIDQ Y   D++N    ++S V++S V++ +  GTS +E GV   CS R PCT I L D+K+    S + Q A+  C N  G+++  +    CL+
Sbjct:  177 LRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTW-QGGSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSNFIGTSKSEYGVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGASTIAVPGLECLE 390          
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: PGLR1_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.200e-45
Identity = 93/210 (44.29%), Postives = 130/210 (61.90%), Query Frame = 2
Query:    8 VKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSSGF-ARNILFQHALMNNVDNPIIIDQNYCPDNENCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSRNPCTGISLEDVKLSYN--NQPAEASCANADGSASGFILPNSC 628
            V V+A GDSPNTDGIH+  SSG+TI ++ IG GDDC+S+GPG + + I  V CGPGHGISIGSLG+ + E  V ++ V   T   T  GVRIK++   +S      I +++  M +  NPI ID  YCP+       AS V + DV +++I GTS+T   V L C+++ PCTG++++DV + Y+  N    A C NA GS  G +   +C
Sbjct:  200 VTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTMFGVRIKAYEDAASVLTVSKIHYENIKMEDSANPIFIDMKYCPNKLCTANGASKVTVKDVTFKNITGTSSTPEAVSLLCTAKVPCTGVTMDDVNVEYSGTNNKTMAICTNAKGSTKGCLKELAC 409          
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: PGLR2_JUNAS (Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.202e-44
Identity = 92/199 (46.23%), Postives = 126/199 (63.32%), Query Frame = 2
Query:    2 QGVKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSSGFARNILFQHALMNNVDNPIIIDQNYCPDNENCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSRNPCTGISLEDVKLSYNNQPAEASCANADGS 598
            QG+K+ A  DSPNTDGI + AS    I    IGTGDDCV+VG G++N+ I+++ CGPGHG+SIGSLGK    + V  V +    F  TQNG+RIK+W +  SG A +I +++  M N +NPI+I+Q YC     C  Q S VKI DV +++IHGTSAT   ++L CS   PC+ I L +V L   +    A+C N + +
Sbjct:  221 QGIKIKAPRDSPNTDGIDIFASKRFEIEKCTIGTGDDCVAVGTGSSNITIKDLTCGPGHGMSIGSLGKGNSRSEVSFVHLDGAKFIDTQNGLRIKTW-QGGSGLASHITYENVEMINAENPILINQFYCTSAAACKNQRSAVKIQDVTFKNIHGTSATTAAIQLMCSDSVPCSNIKLSNVFLKLTSGKV-ATCVNKNAN 417          
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: PGLR1_ARATH (Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana GN=PGA3 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.569e-44
Identity = 88/184 (47.83%), Postives = 123/184 (66.85%), Query Frame = 2
Query:    2 QGVKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSSGFARNILFQHALMNNVDNPIIIDQNYCPDNENCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSRNPCTGISLEDVKLSY 553
            Q +K++A  +SPNTDGIH+  +  V+ILDS I TGDDCVSVG G+ N+ +E V CGPGHG+S+GSLGK + E  V  + V + T   T NG+RIK+WG +    A +I F++ +M +V NPIIIDQNY        G  S V ISD+++++I GT+ T+  V++ CS   PC G+++ DV L Y
Sbjct:  206 QNIKLTAPAESPNTDGIHLSNADNVSILDSTIATGDDCVSVGRGSNNVTVERVICGPGHGLSVGSLGKYKNEEDVSGIHVNNCTMIETDNGLRIKTWGGSDPSKAVDIKFENIIMQSVKNPIIIDQNY-----GSRGGDSQVAISDILFKNIRGTTITKDVVQIMCSKSVPCQGVNVVDVNLDY 384          
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: PGLR2_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.496e-44
Identity = 92/210 (43.81%), Postives = 129/210 (61.43%), Query Frame = 2
Query:    8 VKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSSGF-ARNILFQHALMNNVDNPIIIDQNYCPDNENCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSRNPCTGISLEDVKLSYN--NQPAEASCANADGSASGFILPNSC 628
            V V+A GDSPNTDGIH+  SSG+TI ++ IG GDDC+S+GPG + + I  V CGPGHGISIGSLG+ + E  V ++ V   T   T  GVRIK++   +S      I +++  M +  NPI ID  YCP+       AS V + DV +++I GTS+T   + L C+++ PCTG +++DV + Y+  N    A C NA GS  G +   +C
Sbjct:  200 VTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTMFGVRIKAYEDAASVLTVSKIHYENIKMEDSANPIFIDMKYCPNKLCTANGASKVTVKDVTFKNITGTSSTPEAISLLCTAKVPCTGATMDDVNVEYSGTNNKTMAICTNAKGSTKGCLKELAC 409          
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: PGLR4_ARATH (Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.060e-35
Identity = 79/207 (38.16%), Postives = 120/207 (57.97%), Query Frame = 2
Query:    8 VKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSSGFARNILFQHALMNNVDNPIIIDQNYCPDNENCPGQASGVKISDVIYQDIHGT-SATEVGVKLDCSSRNPCTGISLEDVKL--SYNNQPAEASCANADGSASGFILP 619
            +++S+   SPNTDGIH+  +  V I +S +  GDDC+S+G G +++ I+ V CGP HGISIGSLG    +A V N+TV +     + NG+R+K+W +  +G   N+LF++  M NV N II+DQ YC  +++C  + S VK+ DV Y++I GT       +   CS    CT I++ +V+L         +  C NA G      +P
Sbjct:  249 IQISSPKLSPNTDGIHLGNTRSVGIYNSVVSNGDDCISIGTGCSDVDIQGVTCGPSHGISIGSLGVHNSQACVSNITVRNTVIRDSDNGLRVKTW-QGGTGSVSNLLFENIQMENVLNCIIVDQYYC-QSKDCRNETSAVKVFDVEYRNIKGTYDVRSPPIHFACSDTVACTNITMSEVELLPEEGELVDDPFCWNAYGKQETLTIP 453          
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: PGLRX_COCCA (Exopolygalacturonase OS=Cochliobolus carbonum GN=PGX1 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.097e-25
Identity = 69/206 (33.50%), Postives = 106/206 (51.46%), Query Frame = 2
Query:   38 NTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAG-VQNVTVTSVTFTGTQNGVRIKSW------------GRTSSGFARNILFQHALMNNVDNPIIIDQNYCPDNEN-CPGQASGVKISDVIYQDIHGTSATEVGVKLD---CSSRNPCTGISLEDVKLSYNNQPAEASCANADGSAS 604
            NTDG     S  + I +S I  GDDCVS  P +TN+ ++N+ C   HGIS+GSLG+   E   V+N+ V +++ +   +G RIK W            G   SG  RN+ +   ++ NVD  I I Q Y   N   C    S + ISD+  ++  GT++ +   ++    CSS   C+ IS+E++ +   +     +CANA+G  S
Sbjct:  227 NTDGWDTYRSDNIIIQNSNINNGDDCVSFKPNSTNILVQNLVCNGSHGISVGSLGQYPGEVDIVENILVRNISMSNASDGARIKVWPGASSALSGDLQGGGGSGAVRNVTYDGMIVKNVDYAIEITQCYGQKNLTLCNQFPSNLTISDITIKNFKGTTSKKYDPRVGYVVCSSPKVCSDISIENIDVKSPSGTNLFTCANAEGIQS 432          
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: PGLRX_ASPTU (Exopolygalacturonase OS=Aspergillus tubingensis GN=pgaX PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.912e-22
Identity = 70/208 (33.65%), Postives = 106/208 (50.96%), Query Frame = 2
Query:   29 DSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAG-VQNVTVTSVTFTGTQNGVRIKSW------------GRTSSGFARNILFQHALMNNVDNPIIIDQNYCPDNEN-CPGQASGVKISDVIYQDIHGTSATE----VGVKLDCSSRNPCTGISLEDVKLSYNNQPAEASCANADGS 598
            ++ NTDG     S+ + I +S I  GDDCVS  P +TN+ ++N+ C   HGIS+GSLG+ + E   V+NV V +++     +  RIK W            G   SG  +NI +  AL++NVD  I I Q Y   N   C    S + ISDV  ++  GT++      VG  + CSS + C+ I   ++ ++  +   +  C N D S
Sbjct:  218 EAKNTDGWDTYRSNNIVIQNSVINNGDDCVSFKPNSTNILVQNLHCNGSHGISVGSLGQYKDEVDIVENVYVYNISMFNASDMARIKVWPGTPSALSADLQGGGGSGSVKNITYDTALIDNVDWAIEITQCYGQKNTTLCNEYPSSLTISDVHIKNFRGTTSGSEDPYVGT-IVCSSPDTCSDIYTSNINVTSPDGTNDFVCDNVDES 424          
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: PGLR_COCCA (Polygalacturonase OS=Cochliobolus carbonum GN=PGN1 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.252e-17
Identity = 69/201 (34.33%), Postives = 113/201 (56.22%), Query Frame = 2
Query:   17 SAAGDSP---NTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSSGFARNILFQHALMNNVDN-PIIIDQNYCPDNENCPGQ-ASGVKISDVIYQDIHGT---SATEVGV---KLDCSSRNPCTGISLEDVKLSYN--NQPAEASC 580
            ++AGDS    NTD   + +SSG+TI ++ I   DDCV++  G +++ + N  C  GHG+SIGS+G  +    V+ V V+  T   + NGVRIK+    ++G   +I +++  + N+    I+I+Q+Y   N    G+  +GV I+ V  +++ G+   S TE+ V   K  CS  N  +G+S+   K S +  N P+ ASC
Sbjct:  170 NSAGDSAGAHNTDAFDIGSSSGITISNANIKNQDDCVAINSG-SDIHVTNCQCSGGHGVSIGSVGGRKDNT-VKGVVVSGTTIANSDNGVRIKTIS-GATGSVSDITYENITLKNIAKYGIVIEQDYL--NGGPTGKPTTGVPITGVTLKNVAGSVTGSGTEIYVLCGKGSCSGWN-WSGVSITGGKKSSSCLNVPSGASC 364          
The following BLAST results are available for this feature:
BLAST of CB250257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
PGLR_BRANA2.190e-4643.60Polygalacturonase OS=Brassica napus PE=2 SV=1[more]
PGLR3_ARATH7.044e-4545.58Probable polygalacturonase At3g15720 OS=Arabidopsi... [more]
PGLR1_MAIZE9.200e-4544.29Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1[more]
PGLR2_JUNAS1.202e-4446.23Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 ... [more]
PGLR1_ARATH1.569e-4447.83Exopolygalacturonase clone GBGE184 OS=Arabidopsis ... [more]
PGLR2_MAIZE3.496e-4443.81Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1[more]
PGLR4_ARATH5.060e-3538.16Polygalacturonase At1g48100 OS=Arabidopsis thalian... [more]
PGLRX_COCCA8.097e-2533.50Exopolygalacturonase OS=Cochliobolus carbonum GN=P... [more]
PGLRX_ASPTU4.912e-2233.65Exopolygalacturonase OS=Aspergillus tubingensis GN... [more]
PGLR_COCCA1.252e-1734.33Polygalacturonase OS=Cochliobolus carbonum GN=PGN1... [more]

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Properties
Property NameValue
Genbank descriptionEST0023 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ026 similar to polygalacturonase (acc# BAC22689), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250257 ID=CB250257; Name=CB250257; organism=Citrus sinensis; type=EST; length=715bp
ACAGGGGGTCAAAGTTTCGGCCGCCGGTGACAGCCCAAACACCGATGGCA
TTCATGTTCAAGCATCAAGTGGTGTCACAATTTTGGACAGCAAAATTGGG
ACTGGTGATGATTGTGTATCAGTTGGACCTGGCGCCACCAACTTATGGAT
TGAAAATGTTGCTTGTGGCCCAGGCCATGGGATCAGCATTGGCAGCTTAG
GCAAAGAGCAACAAGAGGCTGGAGTGCAAAATGTGACAGTAACATCTGTG
ACATTTACAGGCACTCAAAATGGAGTGAGGATTAAGTCCTGGGGGAGAAC
AAGCAGTGGATTTGCCAGGAACATTCTTTTCCAACATGCTCTTATGAACA
ATGTCGATAATCCAATCATAATTGATCAAAATTACTGCCCTGACAACGAG
AATTGTCCTGGACAGGCTTCGGGGGTTAAAATCAGTGATGTGATATATCA
AGATATTCATGGAACATCGGCAACGGAAGTTGGAGTAAAGCTCGATTGCA
GTTCAAGGAATCCATGCACTGGAATTAGCTTGGAGGATGTGAAGCTCAGT
TACAATAATCAACCAGCTGAAGCTTCCTGTGCCAACGCTGATGGATCGGC
CTCTGGATTTATTCTGCCAAATAGTTGCTTGAAGACTTGAAGACTTGGAG
TTGTGAAAAGTATTTGAGTAGGAAAAAAAGGCATAGGAAGCCGATCATGA
TTATATAGTTAGTAG
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