CB250265

Overview
NameCB250265
Unique NameCB250265
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length524
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250265 vs. ExPASy Swiss-Prot
Match: AMO_ARATH (Primary amine oxidase OS=Arabidopsis thaliana GN=At1g62810 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.825e-15
Identity = 40/96 (41.67%), Postives = 52/96 (54.17%), Query Frame = 3
Query:   12 RAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVKQNRSLEETDIVLWYVFGVTHIPRLEDWPVMPVDRIGFMLMPHGFFNCSPAVDVPP 299
            R AF  + +WVTPY   E Y GG    Q+ +  + L  W  ++RS+E  DIVLWY  G  H+P  ED+PVMP     F L P  FF  +P +   P
Sbjct:  603 RGAFTNNQIWVTPYNRSEQYAGGVLIYQS-QGDDTLQVWSDRDRSIENKDIVLWYTLGFHHVPCQEDYPVMPTVAASFELKPANFFESNPILGSAP 697          
BLAST of CB250265 vs. ExPASy Swiss-Prot
Match: AMO_KLEAE (Primary amine oxidase OS=Klebsiella aerogenes GN=maoA PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.708e-13
Identity = 35/92 (38.04%), Postives = 52/92 (56.52%), Query Frame = 3
Query:   12 RAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVKQNRSLEETDIVLWYVFGVTHIPRLEDWPVMPVDRIGFMLMPHGFFNCSPAV 287
            R +F+   LWVT Y   E YP G++PN++     GL  + K + SL   D V+W   G TH+ R E+WP+MP +    +L P  FF+ +P +
Sbjct:  660 RLSFMDKQLWVTRYHPTERYPEGKYPNRSAH-DTGLGQYAKDDESLTNHDDVVWITTGTTHVARAEEWPIMPTEWALALLKPWNFFDETPTL 750          
BLAST of CB250265 vs. ExPASy Swiss-Prot
Match: AMO_PICAN (Peroxisomal primary amine oxidase OS=Pichia angusta GN=AMO PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.231e-13
Identity = 35/100 (35.00%), Postives = 59/100 (59.00%), Query Frame = 3
Query:    9 RRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVG-EGLATWVKQ-NRSLEETDIVLWYVFGVTHIPRLEDWPVMPVDRIGFMLMPHGFFNCSPAVDVPPN 302
            +RA +  H++ V PY  + +YP G+   Q    G  G+  W+   + +++ TDI+ ++ FG+TH P  ED+P+MP + I  ML P  FF  +P +D+ P+
Sbjct:  561 KRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDGSENIDNTDILFFHTFGITHFPAPEDFPLMPAEPITLMLRPRHFFTENPGLDIQPS 660          
The following BLAST results are available for this feature:
BLAST of CB250265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
AMO_ARATH1.825e-1541.67Primary amine oxidase OS=Arabidopsis thaliana GN=A... [more]
AMO_KLEAE1.708e-1338.04Primary amine oxidase OS=Klebsiella aerogenes GN=m... [more]
AMO_PICAN2.231e-1335.00Peroxisomal primary amine oxidase OS=Pichia angust... [more]

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Properties
Property NameValue
Genbank descriptionEST0035 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ044 similar to peroxisomal copper-containing amine oxidase (acc# AAD40979), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250265 ID=CB250265; Name=CB250265; organism=Citrus sinensis; type=EST; length=524bp
AATTTTTAAGACGAGCTGCTTTCTTGAAGCATAATCTTTGGGTCACTCCT
TATGCACATGATGAAATGTATCCTGGAGGAGAGTTTCCTAATCAAAATCC
TCGAGTTGGCGAAGGATTGGCTACTTGGGTTAAGCAAAATCGCTCTCTGG
AAGAAACTGACATAGTTCTGTGGTATGTATTTGGAGTGACTCACATTCCT
AGACTGGAAGACTGGCCTGTGATGCCTGTGGATCGCATTGGCTTTATGCT
CATGCCACATGGGTTCTTCAATTGCTCACCAGCAGTGGATGTCCCTCCAA
ATGAAAGCGATTTGGATCTCAAGGACACTGTGATCGCCGAAAAGCCCGTC
CAGAATGGGCTGCTTGCCAAGCTCTGAATGTATATCCGTGGTTGGTTGAG
TTCGTGGCTGCTTGCTTTCTTCTTTTAGTGGGTTGTTTGTTTAAAAATTT
AGGTCTTTGGACAACTTCAGGCAAATAATAATTTTTAATCCAGTAACTAA
AGTACCTGCCCGGGCGGCCGCTCG
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