CB250280

Overview
NameCB250280
Unique NameCB250280
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250280 vs. ExPASy Swiss-Prot
Match: COMT1_MAIZE (Caffeic acid 3-O-methyltransferase OS=Zea mays PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.021e-30
Identity = 67/152 (44.08%), Postives = 102/152 (67.11%), Query Frame = 2
Query:  194 DESFAYANQLVTGSVLPMTMHAAIELGVFKIIAKAGPGAK--LSASEIAAQLPATKNKDAPM--MLDRILRLLASHGVVECSLDDIDGS-QRLYGQSNVSRYFVPNEDGVSLGPLMALIQDKVFLDSWSQLKEAIIEGGVPFDRVHGTHAFE 634
            +E+  YA QL + S+LPMT+  AIELG+ +++ K   G K  L+  E+ A++PA  +  A    M+DR+LRLLAS+ VV C ++D DG  +R Y  + V ++  PNEDGVS+  L  + QDKV ++SW  LK+A+++GG+PF++ +G  AFE
Sbjct:   14 EEACMYAMQLASSSILPMTLKNAIELGLLEVLQKEAGGGKAALAPEEVVARMPAAPSDPAAAAAMVDRMLRLLASYDVVRCQMEDRDGRYERRYSAAPVCKWLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMTAFE 165          
BLAST of CB250280 vs. ExPASy Swiss-Prot
Match: OMT1_CHRAE (Quercetin 3-O-methyltransferase 1 OS=Chrysosplenium americanum GN=OMT1 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.148e-29
Identity = 67/142 (47.18%), Postives = 98/142 (69.01%), Query Frame = 2
Query:  209 YANQLVTGSVLPMTMHAAIELGVFKIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRILRLLASHGVVECSLDDIDGSQRLYGQSNVSRYFVPNEDGVSLGPLMALIQDKVFLDSWSQLKEAIIEGGVPFDRVHGTHAFE 634
            +A QL + SVLPM + +AIEL + +II   G    +S +EIA+ LP T N DAP M+DRILRLL+ + VV CS+  +D  QR+YG + V +Y   N+DGVS+  L  + QDKV ++SW  LK+A+++GG+PF++ +G  +FE
Sbjct:    3 FAMQLASASVLPMVLKSAIELDLLEIIR--GQDTCMSPTEIASHLPTT-NPDAPAMVDRILRLLSCYSVVTCSVRSVD-DQRVYGLAPVCKYLTKNQDGVSIAALCLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMSSFE 140          
BLAST of CB250280 vs. ExPASy Swiss-Prot
Match: OMT2_CHRAE (Quercetin 3-O-methyltransferase 2 OS=Chrysosplenium americanum GN=OMT2 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.958e-29
Identity = 67/142 (47.18%), Postives = 97/142 (68.31%), Query Frame = 2
Query:  209 YANQLVTGSVLPMTMHAAIELGVFKIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRILRLLASHGVVECSLDDIDGSQRLYGQSNVSRYFVPNEDGVSLGPLMALIQDKVFLDSWSQLKEAIIEGGVPFDRVHGTHAFE 634
            +A QL   SVLPM + +AIEL + +II   G    +S +EIA+ LP T N DAP M+DRILRLL+ + VV CS+  +D  QR+YG + V +Y   N+DGVS+  L  + QDKV ++SW  LK+A+++GG+PF++ +G  +FE
Sbjct:    3 FAMQLACASVLPMVLKSAIELDLLEIIR--GQDTCMSPTEIASHLPTT-NPDAPAMVDRILRLLSCYSVVTCSVRSVD-DQRVYGLAPVCKYLTKNQDGVSIAALCLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMSSFE 140          
BLAST of CB250280 vs. ExPASy Swiss-Prot
Match: OMT1_ORYSJ (Quercetin 3-O-methyltransferase 1 OS=Oryza sativa subsp. japonica GN=ROMT-9 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.340e-29
Identity = 69/162 (42.59%), Postives = 104/162 (64.20%), Query Frame = 2
Query:  173 NMANEERDESFAYANQLVTGSVLPMTMHAAIELGVFKIIAKA------GPGAKLSASEIAAQLPATKNKDAPMMLDRILRLLASHGVVECSLDD-IDGS-QRLYGQSNVSRYFVPNEDGVSLGPLMALIQDKVFLDSWSQLKEAIIEGGVPFDRVHGTHAFE 634
            +MA    +E+  YA QL + S+LPMT+  AIELG+ + +  A      G  A L+ +E+A +LP+  N  A  M+DR+LRLLAS+ VV C +++  DG   R Y  + V ++  PNEDGVS+  L  + QDKV ++SW  LK+A+++GG+PF++ +G  AFE
Sbjct:    7 DMAAAADEEACMYALQLASSSILPMTLKNAIELGLLETLQSAAVAGGGGKAALLTPAEVADKLPSKANPAAADMVDRMLRLLASYNVVRCEMEEGADGKLSRRYAAAPVCKWLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMTAFE 168          
BLAST of CB250280 vs. ExPASy Swiss-Prot
Match: IMT1_MESCR (Inositol 4-methyltransferase OS=Mesembryanthemum crystallinum GN=IMT1 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.363e-29
Identity = 70/151 (46.36%), Postives = 96/151 (63.58%), Query Frame = 2
Query:  188 ERDESFA-YANQLVTGSVLPMTMHAAIELGVFKIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRILRLLASHGVVECSLDDIDG-SQRLYGQSNVSRYFVPNEDGVSLGPLMALIQDKVFLDSWSQLKEAIIEGGVPFDRVHGTHAFE 634
            ++DE  A  A  L   +  PM + +A EL +  I +KAG G  +S SEIA+Q+ A KN +AP++LDR+LRLLASH V+ C L   +G SQR+YG + +  Y   N+   SLGPL+ L  DKV ++SW  L + I+EGGVPF R HG   F+
Sbjct:   16 DKDEQLAGLAVTLANAAAFPMILKSAFELKILDIFSKAGEGVFVSTSEIASQIGA-KNPNAPVLLDRMLRLLASHSVLTCKLQKGEGGSQRVYGPAPLCNYLASNDGQGSLGPLLVLHHDKVMMESWFHLNDYILEGGVPFKRAHGMIQFD 165          
BLAST of CB250280 vs. ExPASy Swiss-Prot
Match: SMT_COPJA ((S)-scoulerine 9-O-methyltransferase OS=Coptis japonica GN=SMT PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.672e-23
Identity = 60/133 (45.11%), Postives = 87/133 (65.41%), Query Frame = 2
Query:  239 LPMTMHAAIELGVFKIIAKAGPGAKLSASEIAAQLPATKNKDAPMMLDRILRLLASHGVVECSLDDIDGSQRLYGQSNVSRYFVPNEDGVSLGPLMALIQDKVFLDSWSQLKEAIIEGGV-PFDRVHGTHAFE 634
            LPM + AAIEL VF+II++AGP A+LS S+I A++P TKN  A + LDRILR+L +  ++  S      S R+YG +  SR  V +ED VS+ P++    DK  ++S+  +K+ ++E GV PFDR HG   F+
Sbjct:   51 LPMALRAAIELNVFEIISQAGPDAQLSPSDIVAKIP-TKNPSAAISLDRILRMLGASSILSVSTTK---SGRVYGLNEESRCLVASEDKVSVVPMLLFTSDKAVVESFYNIKDVVLEEGVIPFDRTHGMDFFQ 179          
BLAST of CB250280 vs. ExPASy Swiss-Prot
Match: CHOMT_MEDSA (Isoliquiritigenin 2'-O-methyltransferase OS=Medicago sativa PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.503e-21
Identity = 66/170 (38.82%), Postives = 97/170 (57.06%), Query Frame = 2
Query:  140 FLSKTDKEIQQNMANEERDESFAYANQLVTGSVLPMTMHAAIELGVFKIIAKAGP-GAKLSASEIAAQLPA-TKNKDAPMMLDRILRLLASHGVVECSLDDID--GSQRLYGQSNVSRYFVPNEDGVSLGPLMALIQDKVFLDSWSQLKEAIIEGGVP-FDRVHGTHAFE 634
            +++K D +I       E D +   A  L T  V P  ++AAI+L +F+IIAKA P GA +S SEIA++LPA T++ D P  LDR+LRLLAS+ V+  +   I+  G++R+YG S V +Y VP+E    L      +     L  W   KEA+++  +  F  VHG   +E
Sbjct:    5 YITKEDNQISATSEQTE-DSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYE 173          
The following BLAST results are available for this feature:
BLAST of CB250280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
COMT1_MAIZE3.021e-3044.08Caffeic acid 3-O-methyltransferase OS=Zea mays PE=... [more]
OMT1_CHRAE1.148e-2947.18Quercetin 3-O-methyltransferase 1 OS=Chrysospleniu... [more]
OMT2_CHRAE1.958e-2947.18Quercetin 3-O-methyltransferase 2 OS=Chrysospleniu... [more]
OMT1_ORYSJ3.340e-2942.59Quercetin 3-O-methyltransferase 1 OS=Oryza sativa ... [more]
IMT1_MESCR4.363e-2946.36Inositol 4-methyltransferase OS=Mesembryanthemum c... [more]
SMT_COPJA4.672e-2345.11(S)-scoulerine 9-O-methyltransferase OS=Coptis jap... [more]
CHOMT_MEDSA1.503e-2138.82Isoliquiritigenin 2'-O-methyltransferase OS=Medica... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionEST0054 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ070 similar to caffeic acid O-methyltransferase (acc# AAF63200), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250280 ID=CB250280; Name=CB250280; organism=Citrus sinensis; type=EST; length=634bp
ACATTCAACAACTTTCACTTCAATATTTTCACAATAGCTAGAGGAAAGAA
AACGGAAACTAGCTCATATATACCAATATATAATAAGCTATATCCTTTTG
GACAGGCCAATCAATCTTCACACCACTATAATCGCATTGTTTCTTAGCAA
AACAGATAAGGAAATTCAACAAAATATGGCTAATGAAGAGAGAGACGAAA
GCTTTGCATATGCCAATCAATTGGTGACGGGTTCAGTGCTCCCCATGACC
ATGCATGCAGCAATTGAGCTGGGAGTTTTCAAGATCATAGCCAAAGCTGG
TCCTGGAGCAAAGCTCTCAGCTTCAGAGATTGCAGCTCAGTTGCCTGCCA
CCAAGAACAAAGACGCACCCATGATGTTGGACCGGATACTCAGGCTTCTG
GCTAGCCATGGTGTTGTTGAATGCTCACTAGATGATATTGATGGTTCTCA
GAGACTCTACGGTCAGAGTAATGTTTCCAGATACTTTGTGCCTAACGAAG
ATGGTGTCTCATTGGGCCCCTTAATGGCCTTAATTCAGGACAAGGTGTTT
CTGGACAGCTGGTCCCAATTAAAAGAAGCTATTATTGAAGGAGGAGTTCC
ATTTGATCGTGTTCATGGAACACACGCTTTTGAG
back to top