CB250284

Overview
NameCB250284
Unique NameCB250284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length490
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_ANADF (Methylthioribose-1-phosphate isomerase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=mtnA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.012e-27
Identity = 62/130 (47.69%), Postives = 85/130 (65.38%), Query Frame = 2
Query:    5 DRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTK 394
            D IP           LM  G ++ V+VGADR+AANGD ANKIGTY+LA+ A +H++ FYVAAP +++DL    G  I IEER  +E++      G+++A +G+    PAFDVTP  L+T IITE+GVV +
Sbjct:  199 DGIPVTLLTDNMAGWLMAQGEIACVVVGADRIAANGDVANKIGTYALAVLAAYHHLPFYVAAPWSTVDLATPDGSAIPIEERGDEEVVTL---AGQRIAPAGVPARYPAFDVTPEPLVTAIITERGVVRR 325          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_ANADE (Methylthioribose-1-phosphate isomerase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=mtnA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.012e-27
Identity = 62/128 (48.44%), Postives = 85/128 (66.41%), Query Frame = 2
Query:    5 DRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            D IP           LM  G +  V+VGADR+AANGD ANKIGTY+LA+ A  H + FYVAAP +++DL   +G +I IEER++ E++      G+++A +G+    PAFDVTPA L+T I+TE+GVV
Sbjct:  200 DGIPVTVLTDGMAGWLMARGEIGCVVVGADRIAANGDVANKIGTYALAVLAAHHRLPFYVAAPWSTVDLATPTGADIPIEERASDEVVVL---AGQRIAPAGVPARYPAFDVTPAALVTAIVTERGVV 324          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_YERE8 (Methylthioribose-1-phosphate isomerase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=mtnA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.934e-27
Identity = 66/115 (57.39%), Postives = 79/115 (68.70%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGE-QVAASGISVWNPAFDVTPANLITGIITEKGVVT 391
            LM  GRV AV VGADR+AANGD ANKIGTYSLA+ A +H I FYVAAP T+ D    +G  I IE+R A E+    GG G  Q A +   V+NPAFDVTPA LI+G + + GV+T
Sbjct:  219 LMAQGRVDAVWVGADRIAANGDVANKIGTYSLAVLANYHRIPFYVAAPHTTHDPDCPNGAAIPIEQRDASEVKGVSGGFGHCQWAPANAPVYNPAFDVTPAALISGWVLDSGVIT 333          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_GEOLS (Methylthioribose-1-phosphate isomerase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=mtnA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.934e-27
Identity = 64/127 (50.39%), Postives = 83/127 (65.35%), Query Frame = 2
Query:    5 DRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGV 385
            D IP            M  G ++  +VGADR+AANGDTANKIGT+S+A+ A+ H I FYVAAP++++DL+L+ G  I IEER + E+   R   G  +A  G+ V NP+FDVTPA  IT IITE GV
Sbjct:  208 DSIPVTLISDNMAGFFMSRGEITCCVVGADRIAANGDTANKIGTFSVAVLAREHGIPFYVAAPVSTLDLSLADGSRIPIEERPSTEVTHIR---GLPIAPEGVKVRNPSFDVTPAKYITAIITEYGV 331          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_EXIS2 (Methylthioribose-1-phosphate isomerase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=mtnA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.934e-27
Identity = 63/112 (56.25%), Postives = 82/112 (73.21%), Query Frame = 2
Query:   53 MKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            +K+ +++A+IVGADR+  NGDTANKIGT+ LAL A+   I FYVAAPL++ D T  SG EI IEER A+E+       G+  A +G+ V+NPAFDVTP +LIT IITE GV+
Sbjct:  223 IKEKQITAIIVGADRITRNGDTANKIGTFQLALLARAFGIPFYVAAPLSTFDFTSLSGDEIEIEERDAREVTQL---AGKATAPAGVPVFNPAFDVTPHDLITAIITELGVI 331          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_CITK8 (Methylthioribose-1-phosphate isomerase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=mtnA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.934e-27
Identity = 67/115 (58.26%), Postives = 79/115 (68.70%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGE-QVAASGISVWNPAFDVTPANLITGIITEKGVVT 391
            LM  G V AV VGADR+AANGD ANKIGTYSLA+ AKFH I FYVAAP T++D    +G  I IE+R+A E+    G  G  Q A     V+NPAFDVTPA LI+G + + GVVT
Sbjct:  214 LMAKGLVDAVWVGADRIAANGDVANKIGTYSLAVLAKFHGIPFYVAAPQTTLDPHCPNGDAIPIEQRAAGEVTGVAGSFGAVQWAPENAQVYNPAFDVTPAALISGWVLDSGVVT 328          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_BACP2 (Methylthioribose-1-phosphate isomerase OS=Bacillus pumilus (strain SAFR-032) GN=mtnA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.934e-27
Identity = 62/113 (54.87%), Postives = 83/113 (73.45%), Query Frame = 2
Query:   53 MKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVT 391
            MK+ ++SAVIVGADR+A NGD ANKIGT SLA+ AK   I F++AAPL++ D++   G +I IEER   E+   +   G Q+A   + V+NPAFDVTP +LI+GIITEKG++T
Sbjct:  227 MKEKQISAVIVGADRIARNGDAANKIGTLSLAILAKHFQIPFFIAAPLSTFDVSTKDGSDIPIEERDPLEV---KEFNGVQIAPPDVQVFNPAFDVTPHHLISGIITEKGIIT 336          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_XYLFT (Methylthioribose-1-phosphate isomerase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=mtnA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 5.138e-27
Identity = 61/118 (51.69%), Postives = 78/118 (66.10%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTKAGA 403
            LMK G+V  VIVGADR+ ANGDTANKIGTY LA+ A+ H + F V A   ++D+   +G+ I IE+R  +ELL   G  G +  A GI+ WNP FDVTP  LI  I+TE+GV+    A
Sbjct:  231 LMKSGQVQWVIVGADRICANGDTANKIGTYQLAITARHHGVKFMVVASAATVDMDTVAGEAIEIEQRDPEELL---GVSGVRTVAEGIAAWNPVFDVTPGALIDAIVTERGVIQSPDA 345          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_XYLF2 (Methylthioribose-1-phosphate isomerase OS=Xylella fastidiosa (strain M23) GN=mtnA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 5.138e-27
Identity = 61/118 (51.69%), Postives = 78/118 (66.10%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTKAGA 403
            LMK G+V  VIVGADR+ ANGDTANKIGTY LA+ A+ H + F V A   ++D+   +G+ I IE+R  +ELL   G  G +  A GI+ WNP FDVTP  LI  I+TE+GV+    A
Sbjct:  231 LMKSGQVQWVIVGADRICANGDTANKIGTYQLAITARHHGVKFMVVASAATVDMDTVAGEAIEIEQRDPEELL---GVSGVRTVAEGIAAWNPVFDVTPGALIDAIVTERGVIQSPDA 345          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_SORC5 (Methylthioribose-1-phosphate isomerase OS=Sorangium cellulosum (strain So ce56) GN=mtnA PE=3 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 5.138e-27
Identity = 65/129 (50.39%), Postives = 79/129 (61.24%), Query Frame = 2
Query:    5 DRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVT 391
            D IP            M+ G + AV+VGADR+A NGD ANKIGTY LA  A+ H I FYVAAP ++IDL   SG  I IEERS  EL       G +V   G+ V +PAFDVTPA L+T + TE+G +T
Sbjct:  196 DGIPVEVISDSMAAWFMQKGEIGAVVVGADRIARNGDVANKIGTYGLACLARHHGIPFYVAAPWSTIDLATDSGASIPIEERSRDELAVVG---GRRVVPPGVPVRHPAFDVTPAELVTAVFTERGKLT 321          
The following BLAST results are available for this feature:
BLAST of CB250284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
MTNA_ANADF3.012e-2747.69Methylthioribose-1-phosphate isomerase OS=Anaeromy... [more]
MTNA_ANADE3.012e-2748.44Methylthioribose-1-phosphate isomerase OS=Anaeromy... [more]
MTNA_YERE83.934e-2757.39Methylthioribose-1-phosphate isomerase OS=Yersinia... [more]
MTNA_GEOLS3.934e-2750.39Methylthioribose-1-phosphate isomerase OS=Geobacte... [more]
MTNA_EXIS23.934e-2756.25Methylthioribose-1-phosphate isomerase OS=Exiguoba... [more]
MTNA_CITK83.934e-2758.26Methylthioribose-1-phosphate isomerase OS=Citrobac... [more]
MTNA_BACP23.934e-2754.87Methylthioribose-1-phosphate isomerase OS=Bacillus... [more]
MTNA_XYLFT5.138e-2751.69Methylthioribose-1-phosphate isomerase OS=Xylella ... [more]
MTNA_XYLF25.138e-2751.69Methylthioribose-1-phosphate isomerase OS=Xylella ... [more]
MTNA_SORC55.138e-2750.39Methylthioribose-1-phosphate isomerase OS=Sorangiu... [more]

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Properties
Property NameValue
Genbank descriptionEST0060 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ077 similar to cytokinin-induced gene CIG2 (acc# BAB63262), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250284 ID=CB250284; Name=CB250284; organism=Citrus sinensis; type=EST; length=490bp
ACATGATCGCATACCAGCTACTCTTATAGCCGACTCTGCTGCGGCTGCAT
TGATGAAAGATGGTCGTGTGAGTGCTGTCATTGTCGGAGCAGATCGAGTG
GCTGCAAATGGTGACACTGCTAACAAGATTGGAACCTACAGCCTTGCATT
ATGTGCAAAGTTTCATAATATTCTGTTTTATGTGGCTGCTCCACTGACGT
CAATTGATTTAACCCTTTCTTCTGGACAAGAGATTGTCATAGAGGAGAGG
TCTGCTAAAGAATTGTTGTGCTCTCGAGGAGGACTTGGTGAACAAGTAGC
TGCATCTGGAATCTCTGTCTGGAATCCGGCTTTTGATGTTACCCCAGCTA
ATTTGATCACTGGAATTATAACAGAAAAGGGTGTCGTTACAAAGGCAGGT
GCTGATGATGCTTTTGACATAAAGGATTTCATACAAAAGACAGTCTGAGG
CTCTGATGCAAAAGAAGGTGATTTTTAACCGGATGAAGTG
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