CB250284

Overview
NameCB250284
Unique NameCB250284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length490
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA1_BACAN (Methylthioribose-1-phosphate isomerase 1 OS=Bacillus anthracis GN=mtnA1 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 6.710e-27
Identity = 62/113 (54.87%), Postives = 79/113 (69.91%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            +M  G++ AVIVG DRVAANGD ANKIGT  +++ AK++NI FYVAAP  +IDL   +G+EI IEER A E++      G+  A     V+NPAFDVTP   +T IITEKG+V
Sbjct:  225 VMSQGKIDAVIVGCDRVAANGDVANKIGTLGVSILAKYYNIPFYVAAPTPTIDLKTPTGKEIPIEERDASEVI---NRFGQYSAPKESKVYNPAFDVTPHENVTAIITEKGIV 334          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA1_BACAH (Methylthioribose-1-phosphate isomerase 1 OS=Bacillus thuringiensis (strain Al Hakam) GN=mtnA1 PE=3 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 6.710e-27
Identity = 62/113 (54.87%), Postives = 79/113 (69.91%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            +M  G++ AVIVG DRVAANGD ANKIGT  +++ AK++NI FYVAAP  +IDL   +G+EI IEER A E++      G+  A     V+NPAFDVTP   +T IITEKG+V
Sbjct:  225 VMSQGKIDAVIVGCDRVAANGDVANKIGTLGVSILAKYYNIPFYVAAPTPTIDLKTPTGKEIPIEERDASEVI---NRFGQYSAPKESKVYNPAFDVTPHENVTAIITEKGIV 334          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_XYLFA (Methylthioribose-1-phosphate isomerase OS=Xylella fastidiosa GN=mtnA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 8.764e-27
Identity = 60/118 (50.85%), Postives = 78/118 (66.10%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTKAGA 403
            LMK G+V  VIVGADR+ ANGD ANKIGTY LA+ A+ H + F V A   ++D+  ++G+ I IE+R  +ELL   G  G +  A GI+ WNP FDVTP  LI  I+TE+GV+    A
Sbjct:  231 LMKSGQVQWVIVGADRICANGDAANKIGTYQLAITARHHGVKFMVVASAATVDMDTTAGEAIEIEQRDPEELL---GVSGVRTVAEGIAAWNPVFDVTPGALIDAIVTERGVIQSPDA 345          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_XANCP (Methylthioribose-1-phosphate isomerase OS=Xanthomonas campestris pv. campestris GN=mtnA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 8.764e-27
Identity = 59/115 (51.30%), Postives = 77/115 (66.96%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTK 394
            LMK G V  VIVGADR+ ANGDTANKIG+Y LA+ A+ H + F V AP +++D+  + G +I IE+R   EL    G  G +  A GI  WNP FDVTP +LI  I+TE+GV+ +
Sbjct:  231 LMKSGLVQWVIVGADRICANGDTANKIGSYQLAIAARHHGVKFMVVAPSSTVDMATADGDQIEIEQRDPGELF---GVGGVRTVADGIHAWNPVFDVTPGHLIDAIVTERGVIAQ 342          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_XANCB (Methylthioribose-1-phosphate isomerase OS=Xanthomonas campestris pv. campestris (strain B100) GN=mtnA PE=3 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 8.764e-27
Identity = 59/115 (51.30%), Postives = 77/115 (66.96%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTK 394
            LMK G V  VIVGADR+ ANGDTANKIG+Y LA+ A+ H + F V AP +++D+  + G +I IE+R   EL    G  G +  A GI  WNP FDVTP +LI  I+TE+GV+ +
Sbjct:  231 LMKSGLVQWVIVGADRICANGDTANKIGSYQLAIAARHHGVKFMVVAPSSTVDMATADGDQIEIEQRDPGELF---GVGGVRTVADGIHAWNPVFDVTPGHLIDAIVTERGVIAQ 342          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_XANC8 (Methylthioribose-1-phosphate isomerase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=mtnA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 8.764e-27
Identity = 59/115 (51.30%), Postives = 77/115 (66.96%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTK 394
            LMK G V  VIVGADR+ ANGDTANKIG+Y LA+ A+ H + F V AP +++D+  + G +I IE+R   EL    G  G +  A GI  WNP FDVTP +LI  I+TE+GV+ +
Sbjct:  231 LMKSGLVQWVIVGADRICANGDTANKIGSYQLAIAARHHGVKFMVVAPSSTVDMATADGDQIEIEQRDPGELF---GVGGVRTVADGIHAWNPVFDVTPGHLIDAIVTERGVIAQ 342          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_THET8 (Methylthioribose-1-phosphate isomerase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=mtnA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 8.764e-27
Identity = 62/113 (54.87%), Postives = 80/113 (70.80%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            LM  G V AV+VG DR+A NGD ANK+GTY+LA+ A  H I FY A PL+S+D  L+SG+ I IEERS +E++  R   G ++A  G   ++PAFDVTP   +TGIITEKGV+
Sbjct:  206 LMARGAVDAVVVGVDRMALNGDFANKVGTYALAVLAHHHGIPFYAALPLSSVDPRLASGEGIPIEERSPEEVVAFR---GVRIAPEGFPAYHPAFDVTPHRYLTGIITEKGVL 315          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_THET2 (Methylthioribose-1-phosphate isomerase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=mtnA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 8.764e-27
Identity = 62/113 (54.87%), Postives = 80/113 (70.80%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            LM  G V AV+VG DR+A NGD ANK+GTY+LA+ A  H I FY A PL+S+D  L+SG+ I IEERS +E++  R   G ++A  G   ++PAFDVTP   +TGIITEKGV+
Sbjct:  206 LMARGAVDAVVVGVDRMALNGDFANKVGTYALAVLAHHHGIPFYAALPLSSVDPRLASGEGIPIEERSPEEVVAFR---GVRIAPEGFPAYHPAFDVTPHRYLTGIITEKGVL 315          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_STRMK (Methylthioribose-1-phosphate isomerase OS=Stenotrophomonas maltophilia (strain K279a) GN=mtnA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 8.764e-27
Identity = 60/113 (53.10%), Postives = 75/113 (66.37%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            LMK G V  VIVGADR+ ANGDTANKIGTY LA+ A+ H + F V AP +++D+    G +I IE+R   EL    G  G +  A GI+ WNP FDVTP  LI  I+TE+GV+
Sbjct:  231 LMKTGAVQWVIVGADRICANGDTANKIGTYQLAIAARHHGVKFMVVAPSSTVDMETVDGSQIEIEQRDPGELY---GVGGTRTVAEGIAAWNPVFDVTPGELIDAIVTERGVI 340          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_STRM5 (Methylthioribose-1-phosphate isomerase OS=Stenotrophomonas maltophilia (strain R551-3) GN=mtnA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 8.764e-27
Identity = 60/113 (53.10%), Postives = 75/113 (66.37%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            LMK G V  VIVGADR+ ANGDTANKIGTY LA+ A+ H + F V AP +++D+    G +I IE+R   EL    G  G +  A GI+ WNP FDVTP  LI  I+TE+GV+
Sbjct:  231 LMKTGAVQWVIVGADRICANGDTANKIGTYQLAIAARHHGVKFMVVAPSSTVDMETVDGSQIEIEQRDPGELY---GVGGTRTVAEGIAAWNPVFDVTPGELIDAIVTERGVI 340          
The following BLAST results are available for this feature:
BLAST of CB250284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
MTNA1_BACAN6.710e-2754.87Methylthioribose-1-phosphate isomerase 1 OS=Bacill... [more]
MTNA1_BACAH6.710e-2754.87Methylthioribose-1-phosphate isomerase 1 OS=Bacill... [more]
MTNA_XYLFA8.764e-2750.85Methylthioribose-1-phosphate isomerase OS=Xylella ... [more]
MTNA_XANCP8.764e-2751.30Methylthioribose-1-phosphate isomerase OS=Xanthomo... [more]
MTNA_XANCB8.764e-2751.30Methylthioribose-1-phosphate isomerase OS=Xanthomo... [more]
MTNA_XANC88.764e-2751.30Methylthioribose-1-phosphate isomerase OS=Xanthomo... [more]
MTNA_THET88.764e-2754.87Methylthioribose-1-phosphate isomerase OS=Thermus ... [more]
MTNA_THET28.764e-2754.87Methylthioribose-1-phosphate isomerase OS=Thermus ... [more]
MTNA_STRMK8.764e-2753.10Methylthioribose-1-phosphate isomerase OS=Stenotro... [more]
MTNA_STRM58.764e-2753.10Methylthioribose-1-phosphate isomerase OS=Stenotro... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionEST0060 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ077 similar to cytokinin-induced gene CIG2 (acc# BAB63262), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250284 ID=CB250284; Name=CB250284; organism=Citrus sinensis; type=EST; length=490bp
ACATGATCGCATACCAGCTACTCTTATAGCCGACTCTGCTGCGGCTGCAT
TGATGAAAGATGGTCGTGTGAGTGCTGTCATTGTCGGAGCAGATCGAGTG
GCTGCAAATGGTGACACTGCTAACAAGATTGGAACCTACAGCCTTGCATT
ATGTGCAAAGTTTCATAATATTCTGTTTTATGTGGCTGCTCCACTGACGT
CAATTGATTTAACCCTTTCTTCTGGACAAGAGATTGTCATAGAGGAGAGG
TCTGCTAAAGAATTGTTGTGCTCTCGAGGAGGACTTGGTGAACAAGTAGC
TGCATCTGGAATCTCTGTCTGGAATCCGGCTTTTGATGTTACCCCAGCTA
ATTTGATCACTGGAATTATAACAGAAAAGGGTGTCGTTACAAAGGCAGGT
GCTGATGATGCTTTTGACATAAAGGATTTCATACAAAAGACAGTCTGAGG
CTCTGATGCAAAAGAAGGTGATTTTTAACCGGATGAAGTG
back to top