CB250284

Overview
NameCB250284
Unique NameCB250284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length490
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_YERP3 (Methylthioribose-1-phosphate isomerase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=mtnA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.495e-26
Identity = 64/115 (55.65%), Postives = 79/115 (68.70%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGE-QVAASGISVWNPAFDVTPANLITGIITEKGVVT 391
            LM  G+V A+ VGADR+AANGD ANKIGTYSLA+ A +H I FYVAAP T+ D     G  I IE+R+A E+    GG G  Q A    +V+NPAFDVTPA LI+G + + GV+T
Sbjct:  219 LMAQGQVDAIWVGADRIAANGDVANKIGTYSLAVLAHYHRIPFYVAAPHTTHDPDCPDGAAIPIEQRAASEVTGVSGGFGHCQWAPEDAAVYNPAFDVTPAALISGWVLDSGVIT 333          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_YERPS (Methylthioribose-1-phosphate isomerase OS=Yersinia pseudotuberculosis GN=mtnA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.952e-26
Identity = 64/115 (55.65%), Postives = 79/115 (68.70%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGE-QVAASGISVWNPAFDVTPANLITGIITEKGVVT 391
            LM  G+V A+ VGADR+AANGD ANKIGTYSLA+ A +H I FYVAAP T+ D     G  I IE+R+A E+    GG G  Q A    +V+NPAFDVTPA LI+G + + GV+T
Sbjct:  219 LMAHGQVDAIWVGADRIAANGDVANKIGTYSLAVLAHYHRIPFYVAAPHTTHDPDCPDGAAIPIEQRAASEVTGVSGGFGHCQWAPKDTAVYNPAFDVTPAALISGWVLDSGVIT 333          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_YERPB (Methylthioribose-1-phosphate isomerase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=mtnA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.952e-26
Identity = 64/115 (55.65%), Postives = 79/115 (68.70%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGE-QVAASGISVWNPAFDVTPANLITGIITEKGVVT 391
            LM  G+V A+ VGADR+AANGD ANKIGTYSLA+ A +H I FYVAAP T+ D     G  I IE+R+A E+    GG G  Q A    +V+NPAFDVTPA LI+G + + GV+T
Sbjct:  219 LMAHGQVDAIWVGADRIAANGDVANKIGTYSLAVLAHYHRIPFYVAAPHTTHDPDCPDGAAIPIEQRAASEVTGVSGGFGHCQWAPKDTAVYNPAFDVTPAALISGWVLDSGVIT 333          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_ACIBL (Methylthioribose-1-phosphate isomerase OS=Acidobacteria bacterium (strain Ellin345) GN=mtnA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.952e-26
Identity = 61/121 (50.41%), Postives = 85/121 (70.25%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTKAGADDA 412
            +M  G++ AV+VGADR+AANGD ANKIGTY++A+ AK H I FYVAAP ++IDL    G +I IE+R+ +E+       G+Q+    + + NPAFDVTP+  +T IITE+G V KA  D++
Sbjct:  226 MMAQGKIQAVVVGADRIAANGDVANKIGTYTVAVLAKEHGIPFYVAAPWSTIDLDTPDGSKIPIEQRNGREVTHI---AGKQMTPDNVRIENPAFDVTPSKYVTAIITERG-VAKAPYDES 342          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_DESVV (Methylthioribose-1-phosphate isomerase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=mtnA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.550e-26
Identity = 67/128 (52.34%), Postives = 82/128 (64.06%), Query Frame = 2
Query:    5 DRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            D IP           LMK G V  V+VGADR+AANGD ANKIGTYS+AL A+ H I FYVAAPL++ID     G  I IE R+  E+  +  G   Q+   G+ V+N AFDVTPA+LI GI+TE GV+
Sbjct:  209 DGIPVTVACDNACGLLMKRGMVQKVVVGADRIAANGDAANKIGTYSVALLAREHGIPFYVAAPLSTIDRETPDGDHIPIENRTPTEV--THVG-ATQITPDGVPVFNFAFDVTPAHLIAGIVTEMGVL 333          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_DESVH (Methylthioribose-1-phosphate isomerase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=mtnA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.550e-26
Identity = 67/128 (52.34%), Postives = 82/128 (64.06%), Query Frame = 2
Query:    5 DRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            D IP           LMK G V  V+VGADR+AANGD ANKIGTYS+AL A+ H I FYVAAPL++ID     G  I IE R+  E+  +  G   Q+   G+ V+N AFDVTPA+LI GI+TE GV+
Sbjct:  209 DGIPVTVACDNACGLLMKRGMVQKVVVGADRIAANGDAANKIGTYSVALLAREHGIPFYVAAPLSTIDRETPDGDHIPIENRTPTEV--THVG-ATQITPDGVPVFNFAFDVTPAHLIAGIVTEMGVL 333          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_PSEU2 (Methylthioribose-1-phosphate isomerase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=mtnA PE=3 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 3.330e-26
Identity = 61/131 (46.56%), Postives = 84/131 (64.12%), Query Frame = 2
Query:    2 HDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTK 394
            ++ IP           LM+   ++ VIVGADR+ ANGD ANKIGTY LA+ A  H + F V AP ++ID+ ++SG +IVIEER  +ELL     +G Q   + +  +NP FDVTPA+LI  I+TEKG+V +
Sbjct:  216 NEGIPVTLNADSAAAHLMRTKGITWVIVGADRITANGDVANKIGTYQLAVAAMHHGVRFMVVAPSSTIDMEMASGDDIVIEERDGRELL----EVGGQRVGAEVEAFNPVFDVTPADLIDAIVTEKGIVER 342          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_PSESM (Methylthioribose-1-phosphate isomerase OS=Pseudomonas syringae pv. tomato GN=mtnA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.330e-26
Identity = 60/131 (45.80%), Postives = 84/131 (64.12%), Query Frame = 2
Query:    2 HDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTK 394
            ++ IP           LM+   ++ VIVGADR+ ANGD ANKIGTY LA+ A  H + F V AP ++ID+ ++SG +I+IEER  +ELL     +G Q   + +  +NP FDVTPA+LI  I+TEKG+V +
Sbjct:  216 NEGIPVTLNADSAAAHLMRTKGITWVIVGADRITANGDVANKIGTYQLAVAAMHHGVRFMVVAPSSTIDMEMASGDDIIIEERDGRELL----EVGGQRVGADVEAFNPVFDVTPADLIDAIVTEKGIVER 342          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_PECCP (Methylthioribose-1-phosphate isomerase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=mtnA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.330e-26
Identity = 64/115 (55.65%), Postives = 79/115 (68.70%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGE-QVAASGISVWNPAFDVTPANLITGIITEKGVVT 391
            LM  G+V A+ VGADR+AANGD ANKIGTYSLA+ A +H I FYVAAP T+ D     G+ I IE+R+A E+    G  G  Q A    +V+NPAFDVTPA LI+G + + GVVT
Sbjct:  214 LMAQGQVDAIWVGADRIAANGDVANKIGTYSLAVLAHYHQIPFYVAAPHTTHDPACPDGRAIPIEQRAAAEVTGVSGSFGHCQWAPQNAAVYNPAFDVTPAALISGWVLDTGVVT 328          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA1_BACHK (Methylthioribose-1-phosphate isomerase 1 OS=Bacillus thuringiensis subsp. konkukian GN=mtnA1 PE=3 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 3.330e-26
Identity = 61/113 (53.98%), Postives = 78/113 (69.03%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            +M  G++ AVIVG DRVAANGD ANKIGT  +++ AK++NI FYVAAP  +IDL   +G+EI IEER A E++      G+  A     V+NPAFDVTP   +  IITEKG+V
Sbjct:  225 VMSQGKIDAVIVGCDRVAANGDVANKIGTLGVSILAKYYNIPFYVAAPTPTIDLKTPTGKEIPIEERDASEVI---NRFGQYSAPKESKVYNPAFDVTPHENVIAIITEKGIV 334          
The following BLAST results are available for this feature:
BLAST of CB250284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
MTNA_YERP31.495e-2655.65Methylthioribose-1-phosphate isomerase OS=Yersinia... [more]
MTNA_YERPS1.952e-2655.65Methylthioribose-1-phosphate isomerase OS=Yersinia... [more]
MTNA_YERPB1.952e-2655.65Methylthioribose-1-phosphate isomerase OS=Yersinia... [more]
MTNA_ACIBL1.952e-2650.41Methylthioribose-1-phosphate isomerase OS=Acidobac... [more]
MTNA_DESVV2.550e-2652.34Methylthioribose-1-phosphate isomerase OS=Desulfov... [more]
MTNA_DESVH2.550e-2652.34Methylthioribose-1-phosphate isomerase OS=Desulfov... [more]
MTNA_PSEU23.330e-2646.56Methylthioribose-1-phosphate isomerase OS=Pseudomo... [more]
MTNA_PSESM3.330e-2645.80Methylthioribose-1-phosphate isomerase OS=Pseudomo... [more]
MTNA_PECCP3.330e-2655.65Methylthioribose-1-phosphate isomerase OS=Pectobac... [more]
MTNA1_BACHK3.330e-2653.98Methylthioribose-1-phosphate isomerase 1 OS=Bacill... [more]

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Properties
Property NameValue
Genbank descriptionEST0060 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ077 similar to cytokinin-induced gene CIG2 (acc# BAB63262), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250284 ID=CB250284; Name=CB250284; organism=Citrus sinensis; type=EST; length=490bp
ACATGATCGCATACCAGCTACTCTTATAGCCGACTCTGCTGCGGCTGCAT
TGATGAAAGATGGTCGTGTGAGTGCTGTCATTGTCGGAGCAGATCGAGTG
GCTGCAAATGGTGACACTGCTAACAAGATTGGAACCTACAGCCTTGCATT
ATGTGCAAAGTTTCATAATATTCTGTTTTATGTGGCTGCTCCACTGACGT
CAATTGATTTAACCCTTTCTTCTGGACAAGAGATTGTCATAGAGGAGAGG
TCTGCTAAAGAATTGTTGTGCTCTCGAGGAGGACTTGGTGAACAAGTAGC
TGCATCTGGAATCTCTGTCTGGAATCCGGCTTTTGATGTTACCCCAGCTA
ATTTGATCACTGGAATTATAACAGAAAAGGGTGTCGTTACAAAGGCAGGT
GCTGATGATGCTTTTGACATAAAGGATTTCATACAAAAGACAGTCTGAGG
CTCTGATGCAAAAGAAGGTGATTTTTAACCGGATGAAGTG
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