CB250284

Overview
NameCB250284
Unique NameCB250284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length490
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_SERP5 (Methylthioribose-1-phosphate isomerase OS=Serratia proteamaculans (strain 568) GN=mtnA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.159e-25
Identity = 64/115 (55.65%), Postives = 78/115 (67.83%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGE-QVAASGISVWNPAFDVTPANLITGIITEKGVVT 391
            LM  G+V AV VGADR+AANGD ANKIGTYSLA+ A +H I FYVAAP T+ D    +G  I IE+R+A E+    G  G  Q A     V+NPAFDVTPA LI+G + + GV+T
Sbjct:  214 LMAQGQVDAVWVGADRIAANGDVANKIGTYSLAVLAHYHRIPFYVAAPHTTHDPHCPNGAAIAIEQRAAVEVTGVTGSFGSCQWAPVDAPVYNPAFDVTPAALISGWVFDSGVIT 328          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_PSEMY (Methylthioribose-1-phosphate isomerase OS=Pseudomonas mendocina (strain ymp) GN=mtnA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.159e-25
Identity = 62/130 (47.69%), Postives = 82/130 (63.08%), Query Frame = 2
Query:    5 DRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTK 394
            D +P           LMK   ++ VIVGADR+ ANGD ANKIGTY LA+ A  H + F V AP ++ID++L SG +I++EERS  ELL   G    Q  A+ +   NP FDVTPA+L+  I+TEKGV+ +
Sbjct:  217 DGVPVSLNVDAAAAHLMKTKGITWVIVGADRITANGDVANKIGTYQLAVNAMHHGMRFMVVAPSSTIDMSLESGDDILLEERSGSELLEVAG----QPVAADVPAVNPVFDVTPADLVDYIVTEKGVIER 342          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_AZOVD (Methylthioribose-1-phosphate isomerase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=mtnA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.159e-25
Identity = 60/118 (50.85%), Postives = 80/118 (67.80%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTKAGA 403
            LMK   ++ VIVGADR+ A GD ANKIGTY LA+ A  H + F V AP ++ID++L SG++I IEER  +ELL     +G +  A+ +   NP FDVTPA+LI  I+TE+GVV +  A
Sbjct:  232 LMKTKGITWVIVGADRITAEGDVANKIGTYQLAVVAMHHGVRFMVVAPSSTIDMSLHSGEDIPIEERDGRELL----EIGGKRVAASVEAVNPVFDVTPADLIDAIVTERGVVERPNA 345          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_SYNFM (Methylthioribose-1-phosphate isomerase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=mtnA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.819e-25
Identity = 62/115 (53.91%), Postives = 77/115 (66.96%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTK 394
            LM  G +  V+VGADR+AANGDTANKIGTY  A+ A  H I FYVAAP ++ID +L  G  I IE+R+ KE+       G +VA  G +  N AFDVTP   ITGIITE G+++K
Sbjct:  226 LMSRGMIDVVVVGADRIAANGDTANKIGTYMAAVLACTHGIPFYVAAPRSTIDASLPDGDGIPIEQRAPKEVTHFN---GRRVAPQGAAALNAAFDVTPNKYITGIITEVGILSK 337          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_LEPIN (Methylthioribose-1-phosphate isomerase OS=Leptospira interrogans GN=mtnA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.819e-25
Identity = 63/124 (50.81%), Postives = 82/124 (66.13%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQ----------VAASGISVWNPAFDVTPANLITGIITEKGVVT 391
            +M   ++ AVIVGADR+A+NGDTANKIGTY LA+ AK H + FYVAA   S+D  + +G  I IE R  +E + S G L +           +A  G+   NP+FDVTPA+LITGIITEKG+V+
Sbjct:  228 VMSSRKIDAVIVGADRIASNGDTANKIGTYPLAIVAKHHGVPFYVAATAKSMDFRIPNGSYIPIEMRKEEE-ITSFGFLKDSDGKPLLKEGVIAPKGMKALNPSFDVTPASLITGIITEKGIVS 350          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_LEPIC (Methylthioribose-1-phosphate isomerase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=mtnA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.819e-25
Identity = 63/124 (50.81%), Postives = 82/124 (66.13%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQ----------VAASGISVWNPAFDVTPANLITGIITEKGVVT 391
            +M   ++ AVIVGADR+A+NGDTANKIGTY LA+ AK H + FYVAA   S+D  + +G  I IE R  +E + S G L +           +A  G+   NP+FDVTPA+LITGIITEKG+V+
Sbjct:  228 VMSSRKIDAVIVGADRIASNGDTANKIGTYPLAIVAKHHGVPFYVAATAKSMDFRIPNGSYIPIEMRKEEE-ITSFGFLKDSDGKPLLKEGVIAPKGMKALNPSFDVTPASLITGIITEKGIVS 350          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_CLOBM (Methylthioribose-1-phosphate isomerase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=mtnA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.819e-25
Identity = 57/113 (50.44%), Postives = 77/113 (68.14%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            +M  G++ AVIVG DR+AANGDTANKIGT  +++ AK+  I  Y+AAP  SID+   +G++I IEER+ +E+       G   A  G+ V+NP FDVTP   IT I+TEKG+V
Sbjct:  226 VMSQGKIDAVIVGCDRIAANGDTANKIGTMGVSILAKYFGIPMYIAAPTPSIDIDTKTGKDIPIEERNPEEV---TSRFGVWTAPRGVKVYNPGFDVTPHENITAIVTEKGIV 335          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_THEYD (Methylthioribose-1-phosphate isomerase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=mtnA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.809e-25
Identity = 60/112 (53.57%), Postives = 77/112 (68.75%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGV 385
            L++ G +   IVG DR   NGD ANKIGTYSL++  K +N+ FYVAAP +SIDL++ SG  I IEERS +E+   +   G ++A  GI V N AFDVTPA  +T IITEKG+
Sbjct:  224 LLRKGMIDFAIVGTDRTVRNGDVANKIGTYSLSVLCKENNVPFYVAAPTSSIDLSIPSGDMIPIEERSFEEVTTIK---GVKIAPEGIKVINFAFDVTPAKYVTAIITEKGI 332          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_PSEPK (Methylthioribose-1-phosphate isomerase OS=Pseudomonas putida (strain KT2440) GN=mtnA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.809e-25
Identity = 62/134 (46.27%), Postives = 83/134 (61.94%), Query Frame = 2
Query:    2 HDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTKAGA 403
            ++ IP           LMK   ++ V+VGAD +AANGD A KIGTY LA+ A  H + F V AP TSIDL L++G++I +EER A E L      G    + G+ V+NP FDVTPA+LI  I+TE+G+V +  A
Sbjct:  216 NEGIPVTLCADSALAHLMKTKGITWVVVGADCIAANGDMAGKIGTYQLAVSAMHHGVRFMVVAPSTSIDLNLATGEDIPLEERDADEWL----DFGGTPVSPGVEVFNPVFDVTPADLIDVIVTERGIVERPDA 345          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_PSEPF (Methylthioribose-1-phosphate isomerase OS=Pseudomonas fluorescens (strain Pf0-1) GN=mtnA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.809e-25
Identity = 61/131 (46.56%), Postives = 82/131 (62.60%), Query Frame = 2
Query:    2 HDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTK 394
            ++ IP           +MK   V+ VIVGADR+ ANGD ANKIGTY LA+ A  H + F V AP ++ID+ L+SG +I IEER   ELL     +G +   + +  +NP FDVTPA+LI  I+TEKG+V +
Sbjct:  216 NEGIPVTLNADSAAAHIMKTKGVTWVIVGADRITANGDVANKIGTYQLAVNAMHHGVRFMVVAPSSTIDMNLASGDDIPIEERDGAELL----EVGGKRVGADVEAFNPVFDVTPADLIDAIVTEKGIVER 342          
The following BLAST results are available for this feature:
BLAST of CB250284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
MTNA_SERP52.159e-2555.65Methylthioribose-1-phosphate isomerase OS=Serratia... [more]
MTNA_PSEMY2.159e-2547.69Methylthioribose-1-phosphate isomerase OS=Pseudomo... [more]
MTNA_AZOVD2.159e-2550.85Methylthioribose-1-phosphate isomerase OS=Azotobac... [more]
MTNA_SYNFM2.819e-2553.91Methylthioribose-1-phosphate isomerase OS=Syntroph... [more]
MTNA_LEPIN2.819e-2550.81Methylthioribose-1-phosphate isomerase OS=Leptospi... [more]
MTNA_LEPIC2.819e-2550.81Methylthioribose-1-phosphate isomerase OS=Leptospi... [more]
MTNA_CLOBM2.819e-2550.44Methylthioribose-1-phosphate isomerase OS=Clostrid... [more]
MTNA_THEYD4.809e-2553.57Methylthioribose-1-phosphate isomerase OS=Thermode... [more]
MTNA_PSEPK4.809e-2546.27Methylthioribose-1-phosphate isomerase OS=Pseudomo... [more]
MTNA_PSEPF4.809e-2546.56Methylthioribose-1-phosphate isomerase OS=Pseudomo... [more]

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Properties
Property NameValue
Genbank descriptionEST0060 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ077 similar to cytokinin-induced gene CIG2 (acc# BAB63262), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250284 ID=CB250284; Name=CB250284; organism=Citrus sinensis; type=EST; length=490bp
ACATGATCGCATACCAGCTACTCTTATAGCCGACTCTGCTGCGGCTGCAT
TGATGAAAGATGGTCGTGTGAGTGCTGTCATTGTCGGAGCAGATCGAGTG
GCTGCAAATGGTGACACTGCTAACAAGATTGGAACCTACAGCCTTGCATT
ATGTGCAAAGTTTCATAATATTCTGTTTTATGTGGCTGCTCCACTGACGT
CAATTGATTTAACCCTTTCTTCTGGACAAGAGATTGTCATAGAGGAGAGG
TCTGCTAAAGAATTGTTGTGCTCTCGAGGAGGACTTGGTGAACAAGTAGC
TGCATCTGGAATCTCTGTCTGGAATCCGGCTTTTGATGTTACCCCAGCTA
ATTTGATCACTGGAATTATAACAGAAAAGGGTGTCGTTACAAAGGCAGGT
GCTGATGATGCTTTTGACATAAAGGATTTCATACAAAAGACAGTCTGAGG
CTCTGATGCAAAAGAAGGTGATTTTTAACCGGATGAAGTG
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