CB250284

Overview
NameCB250284
Unique NameCB250284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length490
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_LEPBJ (Methylthioribose-1-phosphate isomerase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=mtnA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 4.071e-24
Identity = 61/124 (49.19%), Postives = 81/124 (65.32%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQ----------VAASGISVWNPAFDVTPANLITGIITEKGVVT 391
            +M   ++ AVIVGADR+A+NGDTANKIGTY LA+ AK H + FYVAA   S+D  +  G  I IE R   E + S G L +           +A +GI   NP+FDVTPA+LI+GIITE+G+++
Sbjct:  228 VMSSRKIHAVIVGADRIASNGDTANKIGTYPLAIIAKHHGVPFYVAATSKSMDFRIPDGSHIPIEMRKENE-VTSFGFLKDATGKPLLNEGVLAPNGIKALNPSFDVTPASLISGIITERGIIS 350          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_DESDA (Methylthioribose-1-phosphate isomerase OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=mtnA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 5.317e-24
Identity = 66/129 (51.16%), Postives = 80/129 (62.02%), Query Frame = 2
Query:    5 DRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGE-QVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            D IP           LM  G V  V+VGADR+AANGDTANKIGTY +AL A+  +I FYVAAPL++ID     G  I IEER   E+      +GE ++    + V N AFDVTPA  I+GIITEKGV+
Sbjct:  208 DGIPVTVACDNACALLMSRGLVQRVVVGADRIAANGDTANKIGTYGVALLARHFHIPFYVAAPLSTIDPATPDGAGIPIEERPELEVT----HMGETRLCPENVPVLNFAFDVTPAEYISGIITEKGVL 332          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_PSEE4 (Methylthioribose-1-phosphate isomerase OS=Pseudomonas entomophila (strain L48) GN=mtnA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.547e-23
Identity = 63/133 (47.37%), Postives = 82/133 (61.65%), Query Frame = 2
Query:    5 DRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTKAGA 403
            D +P           LMK   +S V+VGAD +AANGD A KIGTY +A+ A  H + F V AP +SIDL L++G++I +E R  +ELL      G QV A  + V+NP  DVTPA+LI  I+TEKGVV +  A
Sbjct:  217 DGVPVTVVADAAAGHLMKTKGISWVVVGADCIAANGDVAAKIGTYQIAVAAMHHGLRFMVVAPSSSIDLNLATGEDIPLETRGVEELL---EVAGIQVTAD-VEVYNPVVDVTPADLIDVIVTEKGVVERPDA 345          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_RHOSK (Methylthioribose-1-phosphate isomerase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=mtnA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.639e-23
Identity = 63/129 (48.84%), Postives = 81/129 (62.79%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSG-QEIVIEERSAKELLCSRGG------LGEQVAASGISVWNPAFDVTPANLITGIITEKGV-VTKAGADDA 412
            LM+ G V  VIVG DR  A GD  NKIGTY  AL AK + + FYVA P  +ID T+  G  EI IEERS+ E+   +G       +  Q++  G    NPAFDVTPA+L+TG+ITE+G+   +AGA +A
Sbjct:  226 LMQHGEVDLVIVGTDRTTAQGDVCNKIGTYLKALAAKANGVPFYVALPSPTIDWTVRDGVAEIPIEERSSAEVTHVQGKAPDGSVISVQISPDGTGARNPAFDVTPASLVTGLITERGICAAEAGAMEA 354          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_PARD8 (Methylthioribose-1-phosphate isomerase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=mtnA PE=3 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 2.639e-23
Identity = 57/115 (49.57%), Postives = 76/115 (66.09%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTK 394
            +M+ G V AV+VG DRVAANGD ANKIGT  +A+ A+ + I FYV  P ++ID +   G  IVIEER+  E+  +      ++A   + V+NPAFD+TP  LIT IITEKG+  K
Sbjct:  220 VMRKGWVHAVVVGCDRVAANGDVANKIGTSGVAILARHYKIPFYVLGPTSTIDGSCPDGDSIVIEERNPDEV--TEMWYSRRMAPKDVKVYNPAFDITPHELITAIITEKGIFYK 332          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_NOCFA (Methylthioribose-1-phosphate isomerase OS=Nocardia farcinica GN=mtnA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.501e-23
Identity = 57/112 (50.89%), Postives = 75/112 (66.96%), Query Frame = 2
Query:   53 MKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            M  G V  V+VGADRV A GD ANKIGTY++AL A  H I F V AP ++ D   +S ++IV+EER+A+E+       G   A  G + +NPAFDVTPA+L+T ++TE GVV
Sbjct:  223 MATGLVDCVLVGADRVTARGDVANKIGTYAVALAAHRHGIPFVVVAPESTRDPATASWRDIVVEERAAEEVTAF---AGSATAPVGTAAFNPAFDVTPADLVTAVVTEHGVV 331          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_OCHA4 (Methylthioribose-1-phosphate isomerase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=mtnA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 5.879e-23
Identity = 59/121 (48.76%), Postives = 78/121 (64.46%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSG-QEIVIEERSAKELLCSRGGLGE------QVAASGISVWNPAFDVTPANLITGIITEKGVVT 391
            LM+ G +  VIVG DR  ANGD  NKIGTY  AL A+ +++ FYVA P  +ID T+  G +EI IEER+A E+   +G   +      +++  G    NPAFDVTPA LITG+ITE+G+ T
Sbjct:  230 LMQHGDIDMVIVGTDRTTANGDVCNKIGTYLKALAARDNDVPFYVALPSPTIDWTVQDGVKEIPIEERTADEVSFVQGRAADGSIASVRISPEGSPAANPAFDVTPARLITGLITERGIAT 350          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_DESAD (Methylthioribose-1-phosphate isomerase OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=mtnA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.003e-22
Identity = 61/129 (47.29%), Postives = 79/129 (61.24%), Query Frame = 2
Query:    5 DRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGE-QVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            D IP           LMK G V  V+VGADRV ANGD  NKIGTY +AL A+   I FYVAAP+ +ID    +G ++ IE+R+  E+      +G+ ++   G+ V+N AFD TP  LI GIITEKGV+
Sbjct:  207 DGIPVKVACDNACALLMKKGLVQKVVVGADRVTANGDAVNKIGTYGVALLAREFGIPFYVAAPVYTIDPETPTGDDVPIEDRTPTEVT----HVGDHRITPEGVEVFNFAFDPTPNELIAGIITEKGVL 331          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_METC4 (Methylthioribose-1-phosphate isomerase OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=mtnA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.710e-22
Identity = 61/119 (51.26%), Postives = 76/119 (63.87%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSG-QEIVIEERSAKELLCSRGGLGE------QVAASGISVWNPAFDVTPANLITGIITEKGV 385
            LM+ G+V   IVG+DR  A+GD  NKIGTY  AL A  + I FY A P ++ID TLS G ++I IEER A+E+    G   +       V + G  V NPAFDVTPA L+TGIITE+GV
Sbjct:  228 LMQHGQVDVCIVGSDRTTASGDVCNKIGTYLKALAATDNRIPFYAALPFSTIDWTLSDGVRDIPIEERDAREVTHLTGRTDDGAFATVAVVSPGSPVANPAFDVTPARLVTGIITERGV 346          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_RHIME (Methylthioribose-1-phosphate isomerase OS=Rhizobium meliloti GN=mtnA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.810e-22
Identity = 59/121 (48.76%), Postives = 75/121 (61.98%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSG-QEIVIEERSAKELLCSRGGLGE------QVAASGISVWNPAFDVTPANLITGIITEKGVVT 391
            LM+ G V  VIVG DR  ANGD  NKIGTY  AL A+ + + FYVA P  +ID T+  G +EI IEER   E+   +G   +      +++  G    NPAFDVTPA LITG+ITE+G+ T
Sbjct:  230 LMQHGDVDLVIVGTDRTTANGDVCNKIGTYLKALAARDNGVPFYVALPSPTIDWTVHDGVKEIPIEERPGDEVSFVQGRASDGSIASVRISPEGSPAANPAFDVTPARLITGLITERGIAT 350          
The following BLAST results are available for this feature:
BLAST of CB250284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
MTNA_LEPBJ4.071e-2449.19Methylthioribose-1-phosphate isomerase OS=Leptospi... [more]
MTNA_DESDA5.317e-2451.16Methylthioribose-1-phosphate isomerase OS=Desulfov... [more]
MTNA_PSEE41.547e-2347.37Methylthioribose-1-phosphate isomerase OS=Pseudomo... [more]
MTNA_RHOSK2.639e-2348.84Methylthioribose-1-phosphate isomerase OS=Rhodobac... [more]
MTNA_PARD82.639e-2349.57Methylthioribose-1-phosphate isomerase OS=Parabact... [more]
MTNA_NOCFA4.501e-2350.89Methylthioribose-1-phosphate isomerase OS=Nocardia... [more]
MTNA_OCHA45.879e-2348.76Methylthioribose-1-phosphate isomerase OS=Ochrobac... [more]
MTNA_DESAD1.003e-2247.29Methylthioribose-1-phosphate isomerase OS=Desulfov... [more]
MTNA_METC41.710e-2251.26Methylthioribose-1-phosphate isomerase OS=Methylob... [more]
MTNA_RHIME3.810e-2248.76Methylthioribose-1-phosphate isomerase OS=Rhizobiu... [more]

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Properties
Property NameValue
Genbank descriptionEST0060 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ077 similar to cytokinin-induced gene CIG2 (acc# BAB63262), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250284 ID=CB250284; Name=CB250284; organism=Citrus sinensis; type=EST; length=490bp
ACATGATCGCATACCAGCTACTCTTATAGCCGACTCTGCTGCGGCTGCAT
TGATGAAAGATGGTCGTGTGAGTGCTGTCATTGTCGGAGCAGATCGAGTG
GCTGCAAATGGTGACACTGCTAACAAGATTGGAACCTACAGCCTTGCATT
ATGTGCAAAGTTTCATAATATTCTGTTTTATGTGGCTGCTCCACTGACGT
CAATTGATTTAACCCTTTCTTCTGGACAAGAGATTGTCATAGAGGAGAGG
TCTGCTAAAGAATTGTTGTGCTCTCGAGGAGGACTTGGTGAACAAGTAGC
TGCATCTGGAATCTCTGTCTGGAATCCGGCTTTTGATGTTACCCCAGCTA
ATTTGATCACTGGAATTATAACAGAAAAGGGTGTCGTTACAAAGGCAGGT
GCTGATGATGCTTTTGACATAAAGGATTTCATACAAAAGACAGTCTGAGG
CTCTGATGCAAAAGAAGGTGATTTTTAACCGGATGAAGTG
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