CB250284

Overview
NameCB250284
Unique NameCB250284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length490
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2655 contig Csv1_Contig2655:782..1271. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_THEEB (Methylthioribose-1-phosphate isomerase OS=Thermosynechococcus elongatus (strain BP-1) GN=mtnA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 5.489e-29
Identity = 65/111 (58.56%), Postives = 87/111 (78.38%), Query Frame = 2
Query:   53 MKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGV 385
            M+ G + AV+VGADR+A NGDTANKIGTYS+AL AK HNI F+VAAPL++ID ++++G EI IEER  +E+   + G   ++  +G+  +NPAFDVTPA+LI+GIITE GV
Sbjct:  233 MQRGMIDAVVVGADRIALNGDTANKIGTYSVALAAKAHNIPFFVAAPLSTIDTSIATGAEIPIEERHPQEIY--QVGF-SRITPAGVDFYNPAFDVTPAHLISGIITELGV 340          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_SYNP6 (Methylthioribose-1-phosphate isomerase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=mtnA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 5.489e-29
Identity = 60/113 (53.10%), Postives = 82/113 (72.57%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            LM+  ++   +VG DRV ANGD ANKIGTY+LAL AK H + FYVA P+++ID +L++G EI IEER  +E+   R   G+ +A +G   WNPAFD+TPA L+T IITE+G++
Sbjct:  223 LMRQQQIDCCLVGCDRVTANGDVANKIGTYNLALAAKAHGVPFYVACPISTIDRSLATGAEIEIEERDGREITEIR---GQAIAPAGTKTWNPAFDITPAELVTAIITERGIL 332          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_SYNE7 (Methylthioribose-1-phosphate isomerase OS=Synechococcus elongatus (strain PCC 7942) GN=mtnA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 5.489e-29
Identity = 60/113 (53.10%), Postives = 82/113 (72.57%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            LM+  ++   +VG DRV ANGD ANKIGTY+LAL AK H + FYVA P+++ID +L++G EI IEER  +E+   R   G+ +A +G   WNPAFD+TPA L+T IITE+G++
Sbjct:  223 LMRQQQIDCCLVGCDRVTANGDVANKIGTYNLALAAKAHGVPFYVACPISTIDRSLATGAEIEIEERDGREITEIR---GQAIAPAGTKTWNPAFDITPAELVTAIITERGIL 332          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA2_BACCZ (Methylthioribose-1-phosphate isomerase 2 OS=Bacillus cereus (strain ZK / E33L) GN=mtnA2 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 7.169e-29
Identity = 68/125 (54.40%), Postives = 89/125 (71.20%), Query Frame = 2
Query:   68 VSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTKAGADDAFDIKDFIQKT 442
            ++A+IVGADR+ ANGDTANKIGT +LA+ AK+ +I FYVAAPL++ D+T  +G EIVIEER   E+       G+QVA  G +V+NPAFDVTP  LITGIITE+G++     D   +I    +KT
Sbjct:  232 INAIIVGADRIVANGDTANKIGTMNLAILAKYFDIPFYVAAPLSTFDITKQTGAEIVIEERDETEVTKI---FGKQVAPVGTTVYNPAFDVTPNELITGIITEQGIIR---GDYKREIASLFEKT 350          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA1_THELT (Methylthioribose-1-phosphate isomerase 1 OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=mtnA1 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 7.169e-29
Identity = 65/113 (57.52%), Postives = 84/113 (74.34%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            +MK G++ AVIVGADR+AANGD ANKIGTYS+A+ +  H I FYVAAP ++ID+ + +G EI IEERS  E+       G +VA  G++V+NPAFDVT   LIT IITEKG++
Sbjct:  223 VMKQGKIDAVIVGADRIAANGDVANKIGTYSVAVLSNQHGIPFYVAAPTSTIDIKIKNGSEIPIEERSHDEVTHVH---GVKVAPDGVAVYNPAFDVTEHQLITAIITEKGIL 332          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_RHOFD (Methylthioribose-1-phosphate isomerase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=mtnA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 9.364e-29
Identity = 68/128 (53.12%), Postives = 85/128 (66.41%), Query Frame = 2
Query:    5 DRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            + IP           LM  G V A++VG DRVAANGD ANKIGTY +A+ A+ HNI FYVA PL++IDL +  G  I IEER+A+E+    G    Q AA G+ V NPAFDVTPA L+T +ITE+GV+
Sbjct:  216 ENIPVTLITDNMAGHLMSRGEVDAIVVGTDRVAANGDVANKIGTYMVAVLAQRHNIPFYVACPLSTIDLAIPDGAAIPIEERAAEEV---TGFRDCQWAAKGVQVRNPAFDVTPAELVTALITERGVL 340          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_NOSP7 (Methylthioribose-1-phosphate isomerase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=mtnA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 9.364e-29
Identity = 64/113 (56.64%), Postives = 82/113 (72.57%), Query Frame = 2
Query:   53 MKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQV-AASGISVWNPAFDVTPANLITGIITEKGVV 388
            MK G + AV+VGADR+AANGDTANKIGTYS+A+ AK HNI F+VAAPL+++D  L+ G +I IEER   E+      +G+ +    G+  +NPAFDVTPA LIT IITE G +
Sbjct:  231 MKQGLIHAVVVGADRIAANGDTANKIGTYSVAIAAKAHNIPFFVAAPLSTVDFELADGSKIPIEERDPTEIY----QVGDTILTPEGVDFYNPAFDVTPAELITAIITENGAI 339          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: EI2B1_PYRFU (Putative translation initiation factor eIF-2B subunit 1 OS=Pyrococcus furiosus GN=PF1349 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 9.364e-29
Identity = 66/113 (58.41%), Postives = 84/113 (74.34%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            +M+ G+V A+IVGADR+ ANGD ANKIGTY LA+ AK H I F+  APL+SID++LSSG+EI IEERS +E+L   G       A  + V+NPAFDVTP   +TGIIT++GVV
Sbjct:  233 VMQQGKVDAIIVGADRIVANGDFANKIGTYMLAVLAKEHGIPFFTVAPLSSIDMSLSSGKEIPIEERSPEEVLTCGGCR----IAPDVPVYNPAFDVTPHKYLTGIITDRGVV 341          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_THEM4 (Methylthioribose-1-phosphate isomerase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=mtnA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.086e-28
Identity = 67/113 (59.29%), Postives = 83/113 (73.45%), Query Frame = 2
Query:   53 MKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELL-CSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            MK G+++AVIVGADRVA+NGD ANKIGTY +A+ AK H I FYVAAP ++IDL   +G++I IEER   E+  C     G Q+A   + V+NPAFDVT A LIT IITEKG+V
Sbjct:  224 MKLGKINAVIVGADRVASNGDVANKIGTYMVAVLAKRHGIPFYVAAPTSTIDLNTQTGKDIPIEERKHTEVTHCG----GTQIAPDNVKVFNPAFDVTNAELITAIITEKGIV 332          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_SYNPX (Methylthioribose-1-phosphate isomerase OS=Synechococcus sp. (strain WH8102) GN=mtnA PE=3 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 2.086e-28
Identity = 63/113 (55.75%), Postives = 82/113 (72.57%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            LM+   V AV+VG DRVAANGD ANK+GTY+LAL A+ H I FYV AP +S+D + S G  I IEER  +E+   R   G+++AA G + WNPAFD+TPA+L+T +ITE GV+
Sbjct:  211 LMRRQEVDAVLVGCDRVAANGDVANKVGTYNLALVARAHGIPFYVCAPGSSMDRSTSDGDAITIEERPQEEITQHR---GQRLAAPGAAAWNPAFDITPAHLVTALITEFGVI 320          
The following BLAST results are available for this feature:
BLAST of CB250284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
MTNA_THEEB5.489e-2958.56Methylthioribose-1-phosphate isomerase OS=Thermosy... [more]
MTNA_SYNP65.489e-2953.10Methylthioribose-1-phosphate isomerase OS=Synechoc... [more]
MTNA_SYNE75.489e-2953.10Methylthioribose-1-phosphate isomerase OS=Synechoc... [more]
MTNA2_BACCZ7.169e-2954.40Methylthioribose-1-phosphate isomerase 2 OS=Bacill... [more]
MTNA1_THELT7.169e-2957.52Methylthioribose-1-phosphate isomerase 1 OS=Thermo... [more]
MTNA_RHOFD9.364e-2953.13Methylthioribose-1-phosphate isomerase OS=Rhodofer... [more]
MTNA_NOSP79.364e-2956.64Methylthioribose-1-phosphate isomerase OS=Nostoc p... [more]
EI2B1_PYRFU9.364e-2958.41Putative translation initiation factor eIF-2B subu... [more]
MTNA_THEM42.086e-2859.29Methylthioribose-1-phosphate isomerase OS=Thermosi... [more]
MTNA_SYNPX2.086e-2855.75Methylthioribose-1-phosphate isomerase OS=Synechoc... [more]

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Properties
Property NameValue
Genbank descriptionEST0060 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ077 similar to cytokinin-induced gene CIG2 (acc# BAB63262), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250284 ID=CB250284; Name=CB250284; organism=Citrus sinensis; type=EST; length=490bp
ACATGATCGCATACCAGCTACTCTTATAGCCGACTCTGCTGCGGCTGCAT
TGATGAAAGATGGTCGTGTGAGTGCTGTCATTGTCGGAGCAGATCGAGTG
GCTGCAAATGGTGACACTGCTAACAAGATTGGAACCTACAGCCTTGCATT
ATGTGCAAAGTTTCATAATATTCTGTTTTATGTGGCTGCTCCACTGACGT
CAATTGATTTAACCCTTTCTTCTGGACAAGAGATTGTCATAGAGGAGAGG
TCTGCTAAAGAATTGTTGTGCTCTCGAGGAGGACTTGGTGAACAAGTAGC
TGCATCTGGAATCTCTGTCTGGAATCCGGCTTTTGATGTTACCCCAGCTA
ATTTGATCACTGGAATTATAACAGAAAAGGGTGTCGTTACAAAGGCAGGT
GCTGATGATGCTTTTGACATAAAGGATTTCATACAAAAGACAGTCTGAGG
CTCTGATGCAAAAGAAGGTGATTTTTAACCGGATGAAGTG
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