CB250284

Overview
NameCB250284
Unique NameCB250284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length490
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2655 contig Csv1_Contig2655:782..1271. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_XANC5 (Methylthioribose-1-phosphate isomerase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=mtnA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.035e-27
Identity = 61/115 (53.04%), Postives = 78/115 (67.83%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTK 394
            LMK G V  VIVGADR+ ANGDTANKIGTY LA+ A+ H + F V AP +++D+  +SG +I IE+R   EL    G  G +  A GI  WNP FDVTP +LI  I+TE+GV+ +
Sbjct:  231 LMKSGLVQWVIVGADRICANGDTANKIGTYQLAIAARHHGVKFMVVAPSSTVDMATASGDQIEIEQRDPGELF---GVGGVRTVADGIHAWNPVFDVTPGDLIDAIVTERGVIAQ 342          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_XANAC (Methylthioribose-1-phosphate isomerase OS=Xanthomonas axonopodis pv. citri GN=mtnA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.035e-27
Identity = 61/115 (53.04%), Postives = 78/115 (67.83%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTK 394
            LMK G V  VIVGADR+ ANGDTANKIGTY LA+ A+ H + F V AP +++D+  +SG +I IE+R   EL    G  G +  A GI  WNP FDVTP +LI  I+TE+GV+ +
Sbjct:  231 LMKSGLVQWVIVGADRICANGDTANKIGTYQLAIAARHHGVKFMVVAPSSTVDMATASGDQIEIEQRDPGELF---GVGGVRTVADGIHAWNPVFDVTPGDLIDAIVTERGVIAQ 342          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_MICAN (Methylthioribose-1-phosphate isomerase OS=Microcystis aeruginosa (strain NIES-843) GN=mtnA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.035e-27
Identity = 68/122 (55.74%), Postives = 82/122 (67.21%), Query Frame = 2
Query:   53 MKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKEL-------LCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTKA 397
            M+   + AVIVGADR+AANGDTANKIGTYSLA+ AK HN+ FYVAAPL+++D +L  G  I IE+R   E+       LC R           ++ +NPAFDVTPA LIT IITEKG VT A
Sbjct:  234 MQQKLIDAVIVGADRIAANGDTANKIGTYSLAVVAKAHNLPFYVAAPLSTVDFSLKDGTGIPIEQRDRAEIYQVGTTTLCPR----------DVNFYNPAFDVTPAALITAIITEKGAVTPA 345          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_CYAA5 (Methylthioribose-1-phosphate isomerase OS=Cyanothece sp. (strain ATCC 51142) GN=mtnA PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.035e-27
Identity = 66/129 (51.16%), Postives = 84/129 (65.12%), Query Frame = 2
Query:    5 DRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVA-ASGISVWNPAFDVTPANLITGIITEKGVV 388
            ++IP            M+ G +  V+VGADR+AANGDTANKIGTY LA+ AK H + FYVAAPL+++D +L +G  I IEER   EL      +G  V    G+  +NPAFDVTPA+LITGIITE+  V
Sbjct:  211 EKIPVTVISDNMAAHCMQKGLIDMVVVGADRIAANGDTANKIGTYGLAVIAKMHQVPFYVAAPLSTVDFSLETGDLIPIEERDPSELY----QIGNTVIYPDGVDYYNPAFDVTPADLITGIITEQKTV 335          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_NATTJ (Methylthioribose-1-phosphate isomerase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=mtnA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.352e-27
Identity = 61/128 (47.66%), Postives = 88/128 (68.75%), Query Frame = 2
Query:    5 DRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            +++P           L+K+G +  + VGADR+A+NGDTANKIGT+ L++ AK + + FYV AP+++ID    +G +I IEERS+KE+       G +VA + I V+NPAFD+TPA  ITGIITEKG++
Sbjct:  211 EQLPFALIPDSSAAVLIKNGDIDVIFVGADRIASNGDTANKIGTFMLSILAKKYKVPFYVVAPVSTIDFQAKNGDDITIEERSSKEVTEID---GVRVAPTDIQVYNPAFDITPAENITGIITEKGII 335          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_GEOKA (Methylthioribose-1-phosphate isomerase OS=Geobacillus kaustophilus GN=mtnA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.352e-27
Identity = 63/107 (58.88%), Postives = 80/107 (74.77%), Query Frame = 2
Query:   68 VSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            + A+IVGADR+A NGDTANKIGT+ LAL AK  +I FYVAAPL++IDLT  +G +I IEER   E+       G ++A  G++V+NPAFDVTP  LIT IITEKG++
Sbjct:  231 IGAIIVGADRIAQNGDTANKIGTFGLALLAKSFDIPFYVAAPLSTIDLTTKTGADIPIEERHPDEVTHI---AGVRIAPEGVNVYNPAFDVTPNELITAIITEKGII 334          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_CHLSY (Methylthioribose-1-phosphate isomerase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=mtnA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.352e-27
Identity = 62/113 (54.87%), Postives = 81/113 (71.68%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            +M+ G++  VIVGADR+AANGD ANKIGTY LA+ A++HNI FYVAAP ++IDL  +SG +I IEER   E+       G  +A  G+   +PAFDVTP  L+T IITE+G+V
Sbjct:  223 MMQRGQIDCVIVGADRIAANGDVANKIGTYGLAVLARYHNIPFYVAAPSSTIDLATASGADIPIEERDPAEVTHI---AGVAIAPQGVRAAHPAFDVTPNELVTAIITERGIV 332          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_CHLAA (Methylthioribose-1-phosphate isomerase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=mtnA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.352e-27
Identity = 62/113 (54.87%), Postives = 81/113 (71.68%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            +M+ G++  VIVGADR+AANGD ANKIGTY LA+ A++HNI FYVAAP ++IDL  +SG +I IEER   E+       G  +A  G+   +PAFDVTP  L+T IITE+G+V
Sbjct:  223 MMQRGQIDCVIVGADRIAANGDVANKIGTYGLAVLARYHNIPFYVAAPSSTIDLATASGADIPIEERDPAEVTHI---AGVAIAPQGVRAAHPAFDVTPNELVTAIITERGIV 332          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_ANAVT (Methylthioribose-1-phosphate isomerase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=mtnA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.352e-27
Identity = 63/111 (56.76%), Postives = 81/111 (72.97%), Query Frame = 2
Query:   53 MKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGE-QVAASGISVWNPAFDVTPANLITGIITEKG 382
            MK G + AV+VGADR+AANGD ANKIGTYSLA+ AK HN+ F+VAAP+++ID  L+ G +I IEER+  E+      +G+  +   G+  +NPAFDVTPA LIT IITE G
Sbjct:  225 MKQGLIDAVVVGADRIAANGDAANKIGTYSLAIVAKAHNVPFFVAAPVSTIDFELTDGSQIPIEERNPVEIY----QVGDTTLTPPGVEFYNPAFDVTPAELITAIITENG 331          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA2_BACWK (Methylthioribose-1-phosphate isomerase 2 OS=Bacillus weihenstephanensis (strain KBAB4) GN=mtnA2 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.352e-27
Identity = 64/107 (59.81%), Postives = 79/107 (73.83%), Query Frame = 2
Query:   68 VSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            ++A+IVGADR+  NGDTANKIGT +LA+ AK+  I FYVAAPL++ D T  +G EIVIEER   E+       G+QVA  G  V+NPAFDVTP  LITGIITEKG++
Sbjct:  232 INAIIVGADRIVENGDTANKIGTLNLAILAKYFGIPFYVAAPLSTFDTTKQTGAEIVIEERDETEVTKI---FGKQVAPLGTPVFNPAFDVTPHELITGIITEKGIL 335          
The following BLAST results are available for this feature:
BLAST of CB250284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
MTNA_XANC51.035e-2753.04Methylthioribose-1-phosphate isomerase OS=Xanthomo... [more]
MTNA_XANAC1.035e-2753.04Methylthioribose-1-phosphate isomerase OS=Xanthomo... [more]
MTNA_MICAN1.035e-2755.74Methylthioribose-1-phosphate isomerase OS=Microcys... [more]
MTNA_CYAA51.035e-2751.16Methylthioribose-1-phosphate isomerase OS=Cyanothe... [more]
MTNA_NATTJ1.352e-2747.66Methylthioribose-1-phosphate isomerase OS=Natranae... [more]
MTNA_GEOKA1.352e-2758.88Methylthioribose-1-phosphate isomerase OS=Geobacil... [more]
MTNA_CHLSY1.352e-2754.87Methylthioribose-1-phosphate isomerase OS=Chlorofl... [more]
MTNA_CHLAA1.352e-2754.87Methylthioribose-1-phosphate isomerase OS=Chlorofl... [more]
MTNA_ANAVT1.352e-2756.76Methylthioribose-1-phosphate isomerase OS=Anabaena... [more]
MTNA2_BACWK1.352e-2759.81Methylthioribose-1-phosphate isomerase 2 OS=Bacill... [more]

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Properties
Property NameValue
Genbank descriptionEST0060 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ077 similar to cytokinin-induced gene CIG2 (acc# BAB63262), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250284 ID=CB250284; Name=CB250284; organism=Citrus sinensis; type=EST; length=490bp
ACATGATCGCATACCAGCTACTCTTATAGCCGACTCTGCTGCGGCTGCAT
TGATGAAAGATGGTCGTGTGAGTGCTGTCATTGTCGGAGCAGATCGAGTG
GCTGCAAATGGTGACACTGCTAACAAGATTGGAACCTACAGCCTTGCATT
ATGTGCAAAGTTTCATAATATTCTGTTTTATGTGGCTGCTCCACTGACGT
CAATTGATTTAACCCTTTCTTCTGGACAAGAGATTGTCATAGAGGAGAGG
TCTGCTAAAGAATTGTTGTGCTCTCGAGGAGGACTTGGTGAACAAGTAGC
TGCATCTGGAATCTCTGTCTGGAATCCGGCTTTTGATGTTACCCCAGCTA
ATTTGATCACTGGAATTATAACAGAAAAGGGTGTCGTTACAAAGGCAGGT
GCTGATGATGCTTTTGACATAAAGGATTTCATACAAAAGACAGTCTGAGG
CTCTGATGCAAAAGAAGGTGATTTTTAACCGGATGAAGTG
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