CB250289

Overview
NameCB250289
Unique NameCB250289
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250289 vs. ExPASy Swiss-Prot
Match: 4CL2_TOBAC (4-coumarate--CoA ligase 2 OS=Nicotiana tabacum GN=4CL2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.539e-11
Identity = 65/234 (27.78%), Postives = 103/234 (44.02%), Query Frame = 1
Query:    1 TTSSPKGVVHCRRGIFVMTVDSLIDWSIPK-----QPVYLWTLPMFHANGW-SYPWGMAAVGGTNVCLRKFDAAVIYIMIRQHGVTHMCGAPVVLNMISNLPRSEPLR-NPVHILTAGAPPPAAVLFRTESLGF---LVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGW 672
            TT  PKGV+   +G+ V +V   +D   P      + V L  LP+FH     S       VG   + ++KFD      +I+++ VT     P ++  I+  P  +    + V  + +GA P    L  T    F    +  GYG+TE   ++  C          A E   +KS      V   E+ ++D ++G S+  + +  GEI  RG  +M GYL DP  T + +  +GW
Sbjct:  192 TTGLPKGVMLTHKGL-VTSVAQQVDGENPNLYIHSEDVMLCVLPLFHIYSLNSVLLCGLRVGAAILIMQKFDIVSFLELIQRYKVTIGPFVPPIVLAIAKSPMVDDYDLSSVRTVMSGAAPLGKELEDTVRAKFPNAKLGQGYGMTEAGPVLAMCL-------AFAKEPFEIKSGACGTVVRNAEMKIVDPKTGNSLPRNQS--GEICIRGDQIMKGYLNDPEATARTIDKEGW 415          
BLAST of CB250289 vs. ExPASy Swiss-Prot
Match: 4CL2_PETCR (4-coumarate--CoA ligase 1 OS=Petroselinum crispum GN=4CL2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.622e-11
Identity = 65/235 (27.66%), Postives = 105/235 (44.68%), Query Frame = 1
Query:    1 TTSSPKGVVHCRRGIFVMTVDSLIDWSIPK-----QPVYLWTLPMFHANGWSYPW--GMAAVGGTNVCLRKFDAAVIYIMIRQHGVTHMCGAPVVLNMISNLPRSEPLR-NPVHILTAGAPPPAAVL---FRTESLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGW 672
            TT  PKGV+   +G+ V +V   +D   P      + V +  LP+FH    +     G+ A G T + ++KFD      +I+++ VT     P ++  I+  P  +    + V  + +GA P    L    R +     +  GYG+TE   ++  C          A E   +KS      V   E+ ++D E+  S+  +    GEI  RG  +M GYL DP  TR  + ++GW
Sbjct:  193 TTGLPKGVMLTHKGL-VTSVAQQVDGDNPNLYMHSEDVMICILPLFHIYSLNAVLCCGLRA-GVTILIMQKFDIVPFLELIQKYKVTIGPFVPPIVLAIAKSPVVDKYDLSSVRTVMSGAAPLGKELEDAVRAKFPNAKLGQGYGMTEAGPVLAMCL-------AFAKEPYEIKSGACGTVVRNAEMKIVDPETNASLPRN--QRGEICIRGDQIMKGYLNDPESTRTTIDEEGW 416          
BLAST of CB250289 vs. ExPASy Swiss-Prot
Match: 4CL1_PETCR (4-coumarate--CoA ligase 1 OS=Petroselinum crispum GN=4CL1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.622e-11
Identity = 65/235 (27.66%), Postives = 105/235 (44.68%), Query Frame = 1
Query:    1 TTSSPKGVVHCRRGIFVMTVDSLIDWSIPK-----QPVYLWTLPMFHANGWSYPW--GMAAVGGTNVCLRKFDAAVIYIMIRQHGVTHMCGAPVVLNMISNLPRSEPLR-NPVHILTAGAPPPAAVL---FRTESLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGW 672
            TT  PKGV+   +G+ V +V   +D   P      + V +  LP+FH    +     G+ A G T + ++KFD      +I+++ VT     P ++  I+  P  +    + V  + +GA P    L    R +     +  GYG+TE   ++  C          A E   +KS      V   E+ ++D E+  S+  +    GEI  RG  +M GYL DP  TR  + ++GW
Sbjct:  193 TTGLPKGVMLTHKGL-VTSVAQQVDGDNPNLYMHSEDVMICILPLFHIYSLNAVLCCGLRA-GVTILIMQKFDIVPFLELIQKYKVTIGPFVPPIVLAIAKSPVVDKYDLSSVRTVMSGAAPLGKELEDAVRAKFPNAKLGQGYGMTEAGPVLAMCL-------AFAKEPYEIKSGACGTVVRNAEMKIVDPETNASLPRN--QRGEICIRGDQIMKGYLNDPESTRTTIDEEGW 416          
BLAST of CB250289 vs. ExPASy Swiss-Prot
Match: 4CL1_SOLTU (4-coumarate--CoA ligase 1 OS=Solanum tuberosum GN=4CL1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.036e-11
Identity = 64/234 (27.35%), Postives = 103/234 (44.02%), Query Frame = 1
Query:    1 TTSSPKGVVHCRRGIFVMTVDSLIDWS-----IPKQPVYLWTLPMFHANGWSYPWGMAA-VGGTNVCLRKFDAAVIYIMIRQHGVTHMCGAPVVLNMISNLPRSEPLR-NPVHILTAGAPPPAAVL---FRTESLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGW 672
            TT  PKGV+   +G+ V +V   +D       +    V +  LP+FH    +     A  VG   + ++KFD A    +I +H VT     P ++  I+  P  +    + V  + +GA P    L    R +     +  GYG+TE   ++  C          A E   +KS      V   E+ ++D ++G S+  +    GEI  RG  +M GYL DP  T + ++ +GW
Sbjct:  195 TTGLPKGVMLTHKGL-VTSVAQQVDGENANLYMHSDDVLMCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIAQFLELIPKHKVTIGPFVPPIVLAIAKSPLVDNYDLSSVRTVMSGAAPLGKELEDAVRAKFPNAKLGQGYGMTEAGPVLAMCL-------AFAKEPFDIKSGACGTVVRNAEMKIVDPDTGCSLPRNQP--GEICIRGDQIMKGYLNDPEATARTIEKEGW 418          
The following BLAST results are available for this feature:
BLAST of CB250289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
4CL2_TOBAC3.539e-1127.784-coumarate--CoA ligase 2 OS=Nicotiana tabacum GN=... [more]
4CL2_PETCR4.622e-1127.664-coumarate--CoA ligase 1 OS=Petroselinum crispum ... [more]
4CL1_PETCR4.622e-1127.664-coumarate--CoA ligase 1 OS=Petroselinum crispum ... [more]
4CL1_SOLTU6.036e-1127.354-coumarate--CoA ligase 1 OS=Solanum tuberosum GN=... [more]

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Properties
Property NameValue
Genbank descriptionEST0065 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ085 similar to AMP-binding protein (BAB09604), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250289 ID=CB250289; Name=CB250289; organism=Citrus sinensis; type=EST; length=675bp
ACGACGTCGTCTCCGAAAGGCGTCGTCCATTGTCGCCGTGGCATTTTCGT
CATGACCGTCGATTCTTTAATCGATTGGTCAATTCCGAAACAGCCGGTAT
ACTTGTGGACCCTACCGATGTTTCACGCTAACGGCTGGAGTTACCCGTGG
GGGATGGCGGCCGTTGGTGGGACTAACGTTTGCTTACGGAAATTCGACGC
CGCCGTTATCTATATAATGATTCGACAACACGGCGTCACACACATGTGTG
GAGCCCCAGTTGTGCTCAACATGATATCAAATTTACCCAGAAGCGAACCG
TTGAGGAACCCGGTTCATATTTTGACAGCCGGAGCTCCACCACCGGCGGC
GGTGCTTTTCAGAACAGAGTCACTGGGTTTCTTAGTGAGCCACGGGTATG
GTTTAACGGAAACTGCGGGTCTTGTCGTGTCATGTGCGTGGAAAAATAAG
TGGAATAGGTTACCGGCGACGGAGAGGGCGAGGATGAAATCGAGACAAGG
AGTGAGGACGGTTTGCTTCACCGAAATAGACGTTATAGATTCCGAGTCAG
GACTCAGTGTGAGTCACGACGGGGCATCGCTCGGTGAAATCGTGTTCAGA
GGCGGAAGCATGATGCTTGGTTATCTCAAAGACCCTAACGGGACCCGCAA
GTGCATGAAGGATGATGGTTGGTTT
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