CB250289
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB250289 vs. ExPASy Swiss-Prot
Match: 4CL2_TOBAC (4-coumarate--CoA ligase 2 OS=Nicotiana tabacum GN=4CL2 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.539e-11 Identity = 65/234 (27.78%), Postives = 103/234 (44.02%), Query Frame = 1 Query: 1 TTSSPKGVVHCRRGIFVMTVDSLIDWSIPK-----QPVYLWTLPMFHANGW-SYPWGMAAVGGTNVCLRKFDAAVIYIMIRQHGVTHMCGAPVVLNMISNLPRSEPLR-NPVHILTAGAPPPAAVLFRTESLGF---LVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGW 672 TT PKGV+ +G+ V +V +D P + V L LP+FH S VG + ++KFD +I+++ VT P ++ I+ P + + V + +GA P L T F + GYG+TE ++ C A E +KS V E+ ++D ++G S+ + + GEI RG +M GYL DP T + + +GW Sbjct: 192 TTGLPKGVMLTHKGL-VTSVAQQVDGENPNLYIHSEDVMLCVLPLFHIYSLNSVLLCGLRVGAAILIMQKFDIVSFLELIQRYKVTIGPFVPPIVLAIAKSPMVDDYDLSSVRTVMSGAAPLGKELEDTVRAKFPNAKLGQGYGMTEAGPVLAMCL-------AFAKEPFEIKSGACGTVVRNAEMKIVDPKTGNSLPRNQS--GEICIRGDQIMKGYLNDPEATARTIDKEGW 415
BLAST of CB250289 vs. ExPASy Swiss-Prot
Match: 4CL2_PETCR (4-coumarate--CoA ligase 1 OS=Petroselinum crispum GN=4CL2 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.622e-11 Identity = 65/235 (27.66%), Postives = 105/235 (44.68%), Query Frame = 1 Query: 1 TTSSPKGVVHCRRGIFVMTVDSLIDWSIPK-----QPVYLWTLPMFHANGWSYPW--GMAAVGGTNVCLRKFDAAVIYIMIRQHGVTHMCGAPVVLNMISNLPRSEPLR-NPVHILTAGAPPPAAVL---FRTESLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGW 672 TT PKGV+ +G+ V +V +D P + V + LP+FH + G+ A G T + ++KFD +I+++ VT P ++ I+ P + + V + +GA P L R + + GYG+TE ++ C A E +KS V E+ ++D E+ S+ + GEI RG +M GYL DP TR + ++GW Sbjct: 193 TTGLPKGVMLTHKGL-VTSVAQQVDGDNPNLYMHSEDVMICILPLFHIYSLNAVLCCGLRA-GVTILIMQKFDIVPFLELIQKYKVTIGPFVPPIVLAIAKSPVVDKYDLSSVRTVMSGAAPLGKELEDAVRAKFPNAKLGQGYGMTEAGPVLAMCL-------AFAKEPYEIKSGACGTVVRNAEMKIVDPETNASLPRN--QRGEICIRGDQIMKGYLNDPESTRTTIDEEGW 416
BLAST of CB250289 vs. ExPASy Swiss-Prot
Match: 4CL1_PETCR (4-coumarate--CoA ligase 1 OS=Petroselinum crispum GN=4CL1 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.622e-11 Identity = 65/235 (27.66%), Postives = 105/235 (44.68%), Query Frame = 1 Query: 1 TTSSPKGVVHCRRGIFVMTVDSLIDWSIPK-----QPVYLWTLPMFHANGWSYPW--GMAAVGGTNVCLRKFDAAVIYIMIRQHGVTHMCGAPVVLNMISNLPRSEPLR-NPVHILTAGAPPPAAVL---FRTESLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGW 672 TT PKGV+ +G+ V +V +D P + V + LP+FH + G+ A G T + ++KFD +I+++ VT P ++ I+ P + + V + +GA P L R + + GYG+TE ++ C A E +KS V E+ ++D E+ S+ + GEI RG +M GYL DP TR + ++GW Sbjct: 193 TTGLPKGVMLTHKGL-VTSVAQQVDGDNPNLYMHSEDVMICILPLFHIYSLNAVLCCGLRA-GVTILIMQKFDIVPFLELIQKYKVTIGPFVPPIVLAIAKSPVVDKYDLSSVRTVMSGAAPLGKELEDAVRAKFPNAKLGQGYGMTEAGPVLAMCL-------AFAKEPYEIKSGACGTVVRNAEMKIVDPETNASLPRN--QRGEICIRGDQIMKGYLNDPESTRTTIDEEGW 416
BLAST of CB250289 vs. ExPASy Swiss-Prot
Match: 4CL1_SOLTU (4-coumarate--CoA ligase 1 OS=Solanum tuberosum GN=4CL1 PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.036e-11 Identity = 64/234 (27.35%), Postives = 103/234 (44.02%), Query Frame = 1 Query: 1 TTSSPKGVVHCRRGIFVMTVDSLIDWS-----IPKQPVYLWTLPMFHANGWSYPWGMAA-VGGTNVCLRKFDAAVIYIMIRQHGVTHMCGAPVVLNMISNLPRSEPLR-NPVHILTAGAPPPAAVL---FRTESLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGW 672 TT PKGV+ +G+ V +V +D + V + LP+FH + A VG + ++KFD A +I +H VT P ++ I+ P + + V + +GA P L R + + GYG+TE ++ C A E +KS V E+ ++D ++G S+ + GEI RG +M GYL DP T + ++ +GW Sbjct: 195 TTGLPKGVMLTHKGL-VTSVAQQVDGENANLYMHSDDVLMCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIAQFLELIPKHKVTIGPFVPPIVLAIAKSPLVDNYDLSSVRTVMSGAAPLGKELEDAVRAKFPNAKLGQGYGMTEAGPVLAMCL-------AFAKEPFDIKSGACGTVVRNAEMKIVDPDTGCSLPRNQP--GEICIRGDQIMKGYLNDPEATARTIEKEGW 418 The following BLAST results are available for this feature:
BLAST of CB250289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 14
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Sequences
The
following sequences are available for this feature:
EST sequence >CB250289 ID=CB250289; Name=CB250289; organism=Citrus sinensis; type=EST; length=675bpback to top |