CB250291

Overview
NameCB250291
Unique NameCB250291
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig113 contig Csv1_Contig113:1..594. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250291 vs. ExPASy Swiss-Prot
Match: DERL3_HUMAN (Derlin-3 OS=Homo sapiens GN=DERL3 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 3.686e-24
Identity = 52/107 (48.60%), Postives = 72/107 (67.29%), Query Frame = 3
Query:   42 LIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMT-GRRPLKTPSFIKAL 359
            L GG++  L      + FL  +L  M+VYVWS+++P + ++F GL TF A +LPW L+GFS+ +G S  VDLLG+  GH YYFLEDV+P    G+R L+TP F+K L
Sbjct:  102 LFGGVLMTLLGLLGSLFFLGQALMAMLVYVWSRRSPRVRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIAVGHIYYFLEDVFPNQPGGKRLLQTPGFLKLL 208          
BLAST of CB250291 vs. ExPASy Swiss-Prot
Match: DERL3_BOVIN (Derlin-3 OS=Bos taurus GN=DERL3 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 8.212e-24
Identity = 52/107 (48.60%), Postives = 71/107 (66.36%), Query Frame = 3
Query:   42 LIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMT-GRRPLKTPSFIKAL 359
            L GG++  L      + FL  +LT M+VYVWS+++P + ++F GL TF A +LPW L+G  + +G S  VDLLG+  GH YYFLEDV+P    G+R L TPSF+K L
Sbjct:  102 LFGGVLMTLLGLLGSLFFLGQALTAMLVYVWSRRSPGVRVNFFGLLTFQAPFLPWALMGLPMLLGNSILVDLLGIAVGHVYYFLEDVFPNQPGGKRLLLTPSFLKLL 208          
BLAST of CB250291 vs. ExPASy Swiss-Prot
Match: DERL3_MOUSE (Derlin-3 OS=Mus musculus GN=Derl3 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.829e-23
Identity = 51/110 (46.36%), Postives = 71/110 (64.55%), Query Frame = 3
Query:   42 LIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMT-GRRPLKTPSFIKALFAD 368
            L GG++  L      + FL  +L  M+VYVWS+++P + ++F GL  F A +LPW L+GFS+ +G S   DLLG++ GH YYFLEDV+P    G+R L TPS +K L  D
Sbjct:  102 LFGGVLMTLLGFLGSLFFLGQALMAMLVYVWSRRSPHVRVNFFGLLNFQAPFLPWALMGFSLLLGNSVVTDLLGILVGHIYYFLEDVFPNQPGGKRLLLTPSVLKLLLDD 211          
BLAST of CB250291 vs. ExPASy Swiss-Prot
Match: DERL1_ARATH (Derlin-1 OS=Arabidopsis thaliana GN=DER1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.022e-18
Identity = 48/121 (39.67%), Postives = 71/121 (58.68%), Query Frame = 3
Query:    3 MLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFA 365
            M++FG+     T+L+  +IP+    F     L  SL  M++Y+WS++ P  ++S  GL T  A YLPW +L   V  G+    DLLG+IAGH YYFL  ++P  TG+  LKTP ++  + A
Sbjct:   98 MMIFGSF----TLLVLSVIPFFWTPF-----LGVSLVFMLLYLWSREFPNANISLYGLVTLKAFYLPWAMLALDVIFGSPIMPDLLGIIAGHLYYFLTVLHPLATGKNYLKTPKWVNKIVA 209          
BLAST of CB250291 vs. ExPASy Swiss-Prot
Match: DERL1_ORYSJ (Derlin-1 OS=Oryza sativa subsp. japonica GN=DER1 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 7.444e-17
Identity = 50/134 (37.31%), Postives = 71/134 (52.99%), Query Frame = 3
Query:    3 MLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVR 404
            M++FGA  L    L    IP+L      I FL   +  M++YVWS++ P   +S  GL    + YLPW +LG  V  G+     LLG++ GH YYFL  ++P  TG+  LKTP ++  + A   + V   A VR
Sbjct:   98 MMIFGAISL----LALSAIPFLD-----IYFLGVPMVSMLLYVWSREYPNSQISMYGLVQLRSFYLPWAMLGLDVIFGSEILPGLLGILVGHTYYFLSVLHPLATGKNYLKTPMWVHKIVARFRIGVQANAPVR 222          
BLAST of CB250291 vs. ExPASy Swiss-Prot
Match: DER11_MAIZE (Derlin-1.1 OS=Zea mays GN=DER1.1 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.404e-15
Identity = 49/140 (35.00%), Postives = 75/140 (53.57%), Query Frame = 3
Query:    3 MLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVRFAPPPA 422
            M++FGA  L    L+  +IP  +  F  I  +S     M++YVWS++NP   ++  GL    + YLPW +L   V  G+S    LLG++ GH YYF   ++P  TG+  LKTP ++  + A   + +   + VR   PPA
Sbjct:   98 MMIFGAISL----LVLSIIPLFNSFFLGIPMVS-----MLLYVWSRENPNAQINIYGLVQLRSFYLPWAMLLLDVIFGSSLMPGLLGIMVGHLYYFFAVLHPLATGKSYLKTPKWVHKIVARFRIGMQANSPVR---PPA 225          
BLAST of CB250291 vs. ExPASy Swiss-Prot
Match: DER12_MAIZE (Derlin-1.2 OS=Zea mays GN=DER1.2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.335e-15
Identity = 46/134 (34.33%), Postives = 72/134 (53.73%), Query Frame = 3
Query:    3 MLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVR 404
            M++FGA  L    L+  +IP L+     +  +S     M+VYVWS++NP   ++  G+    A YLPWV+L   V  G+     LLG++ GH YY+   ++P  TG+  LKTP ++  + A   + +   A VR
Sbjct:   98 MMIFGAISL----LVLSVIPQLNTYVLGLPMVS-----MLVYVWSRENPNAQINIYGILQLKAFYLPWVMLLLDVIFGSPLMPGLLGIMVGHLYYYFAVLHPLATGKNYLKTPKWVHKIVARFRIGMQANAPVR 222          
BLAST of CB250291 vs. ExPASy Swiss-Prot
Match: DERL1_DICDI (Probable derlin-1 homolog OS=Dictyostelium discoideum GN=derl1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.227e-12
Identity = 39/117 (33.33%), Postives = 60/117 (51.28%), Query Frame = 3
Query:   93 FLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWV-LLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPL-KTPSFIKALFADEAVVVARPANVRFAPPPAEEVHQ 437
            FL     + ++Y++S+ NP    +F G F+F   YLPWV L+   +  G   + D L +++GH +++L D+YPR  G   L KTP FI  +F         P NVR  P     + +
Sbjct:  117 FLGTMTIMSLIYIYSRMNPTGTSNFYGFFSFKTIYLPWVFLVAHFLQTGHPPYSDFLAIVSGHIFFYLTDIYPRANGVPALIKTPKFITNIFNKGD---RNPNNVRRDPRTGRPIQE 230          
BLAST of CB250291 vs. ExPASy Swiss-Prot
Match: DERL1_CAEEL (Derlin-1 OS=Caenorhabditis elegans GN=cup-2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.098e-11
Identity = 35/95 (36.84%), Postives = 51/95 (53.68%), Query Frame = 3
Query:   87 IIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADE 371
            I FL   + + ++YVW + N    +SF     F A YLPWVL GF+  +      +L+G++ GHAY+F+   YP   G   + TP F+  L  DE
Sbjct:  117 IYFLLEPMVISVLYVWCQVNKDTIVSFWFGMRFPARYLPWVLWGFNAVLRGGGTNELVGILVGHAYFFVALKYPDEYGVDLISTPEFLHRLIPDE 211          
BLAST of CB250291 vs. ExPASy Swiss-Prot
Match: DERL1_DROME (Derlin-1 OS=Drosophila melanogaster GN=CG10908 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.740e-11
Identity = 41/109 (37.61%), Postives = 57/109 (52.29%), Query Frame = 3
Query:   45 IGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRP-LKTPSFIKALFAD 368
            IGGMI         + FL ++L L + Y+W + N  + +SF     F A YLPWVL  F  F+   +   L+G+  GH YYF +  Y +  G  P L+TP F+K L  D
Sbjct:  110 IGGMI-------FNVYFLMDTLVLAITYIWCQLNKDVTVSFWFGTRFKAMYLPWVLAAFE-FIFHFSLASLVGIFVGHVYYFFKFQYSQDLGGTPLLETPQFLKRLVPD 210          
The following BLAST results are available for this feature:
BLAST of CB250291 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
DERL3_HUMAN3.686e-2448.60Derlin-3 OS=Homo sapiens GN=DERL3 PE=1 SV=2[more]
DERL3_BOVIN8.212e-2448.60Derlin-3 OS=Bos taurus GN=DERL3 PE=2 SV=1[more]
DERL3_MOUSE1.829e-2346.36Derlin-3 OS=Mus musculus GN=Derl3 PE=2 SV=1[more]
DERL1_ARATH3.022e-1839.67Derlin-1 OS=Arabidopsis thaliana GN=DER1 PE=2 SV=1[more]
DERL1_ORYSJ7.444e-1737.31Derlin-1 OS=Oryza sativa subsp. japonica GN=DER1 P... [more]
DER11_MAIZE1.404e-1535.00Derlin-1.1 OS=Zea mays GN=DER1.1 PE=2 SV=2[more]
DER12_MAIZE5.335e-1534.33Derlin-1.2 OS=Zea mays GN=DER1.2 PE=2 SV=1[more]
DERL1_DICDI4.227e-1233.33Probable derlin-1 homolog OS=Dictyostelium discoid... [more]
DERL1_CAEEL2.098e-1136.84Derlin-1 OS=Caenorhabditis elegans GN=cup-2 PE=1 S... [more]
DERL1_DROME2.740e-1137.61Derlin-1 OS=Drosophila melanogaster GN=CG10908 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionEST0068 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ091 similar to unknown Arabidopsis protein (acc# NP_192395), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250291 ID=CB250291; Name=CB250291; organism=Citrus sinensis; type=EST; length=594bp
ACATGCTTTTATTTGGAGCCACTTTTCTAACCGGCACTGTTCTTATTGGG
GGGATGATACCTTACTTGTCAGAATCATTTGCAAAAATCATTTTCCTTAG
CAATTCATTGACACTCATGATGGTTTATGTATGGAGCAAACAAAATCCTT
TCATCCACATGAGTTTTTTGGGCCTTTTTACATTTACAGCAGCTTACTTA
CCATGGGTGCTCTTGGGATTCTCAGTCTTCGTTGGCGCTAGCGCTTGGGT
GGATTTGCTGGGGATGATAGCCGGTCATGCCTACTATTTTCTCGAAGATG
TTTATCCTAGGATGACAGGTCGCCGGCCCTTAAAAACACCATCTTTTATC
AAAGCACTGTTTGCGGATGAGGCTGTAGTGGTAGCACGGCCTGCAAATGT
GAGATTTGCTCCACCACCTGCAGAGGAAGTTCACCAAGACTAATGAGAAC
CTTTGAGGGATGGGACTCTCTTGAGGGCTCACTTTTGGTTTGTATTGATC
TGTATGGGAAATCTGCGACCTGCAGAAAGTGTTGTTGACCCATGTCTTGA
AAGTATTTATGTGAACTAGCTAATTATGGTGTTTATGTCATAAG
back to top