CB250295

Overview
NameCB250295
Unique NameCB250295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length590
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig127 contig Csv1_Contig127:502..1091. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB250295 vs. ExPASy Swiss-Prot
Match: AMYB_THETU (Thermophilic beta-amylase OS=Thermoanaerobacter thermosulfurogenes PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.073e-11
Identity = 61/207 (29.47%), Postives = 91/207 (43.96%), Query Frame = 3 
Query:    3 NWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGTTITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQRHAE------ANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSW 590
            +WS Y   A+ V   GLK    +  HA          IP+P WV    ++Q ++ Y D++G      +S      P   G T  Q+Y EF  SF S+F  +    IT I +  GP GELRYPS++  +     PG G  QC  +  +   Q   +      A  N  WG     D        + ++FF +    +++ YG+ FL+W
Sbjct:   88 DWSYYKTYADTVRAAGLKWVPIMSTHACGGNVGDTVNIPIPSWV-WTKDTQDNMQYKDEAGNWDNEAVS------PWYSGLT--QLYNEFYSSFASNFSSYKDI-ITKIYISGGPSGELRYPSYNP-SHGWTYPGRGSLQCYSKAAITSFQNAMKSKYGTIAAVNSAWG-TSLTDFSQISPPTDGDNFFTN---GYKTTYGNDFLTW 279
The following BLAST results are available for this feature:
BLAST of CB250295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
AMYB_THETU2.073e-1129.47Thermophilic beta-amylase OS=Thermoanaerobacter th... [more]

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Properties
Property NameValue
Genbank descriptionEST0073 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ099 similar to beta-amylase (acc# AAD38148), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250295 ID=CB250295; Name=CB250295; organism=Citrus sinensis; type=EST; length=590bp
ACAATTGGTCTGGCTACCTTGCTGTTGCAGAGATGGTTGAAAAAATAGGT
CTCAAGCTTCATGTGTCACTCTGCTTCCATGCTTTGAAACAGCCAAAAAT
TCCGCTCCCCGATTGGGTCTCCCAAATTGGTGAGTCCCAATCAAGCATCT
TTTACACAGATCAGTCAGGGCAGCAATTCAAAGGTTGCCTATCATTGGCC
GTTGATGATCTTCCAGTTCTTGATGGGAAAACTCCAATTCAAGTTTACCA
AGAATTTTGCGAGAGCTTTAAGTCTTCATTCAAGCCTTTCATGGGCACGA
CAATAACGGGCATCTCGATGGGTCTAGGACCAGATGGTGAACTTCGGTAT
CCATCTCACCACCGACTAGCCAAAAGTAGCAAAATCCCTGGAGTTGGAGA
ATTCCAGTGTTGTGACAGAAACATGCTTAACCTTCTTCAGCGACATGCCG
AAGCAAATGGAAATCCTTTATGGGGACTTCGTGGTCCCCATGATGCCCCC
AGTTATGATGAGTCACCTAACTCAAACAGTTTCTTTAAGGATAATGGTGG
TTCCTGGGAGTCTCCCTATGGTGACTTTTTCCTTTCCTGG
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