CB250308

Overview
NameCB250308
Unique NameCB250308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length436
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5968 contig Csv1_Contig5968:474..909. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: DRP1C_ARATH (Dynamin-related protein 1C OS=Arabidopsis thaliana GN=DRP1C PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 3.931e-37
Identity = 71/139 (51.08%), Postives = 102/139 (73.38%), Query Frame = 3
Query:    6 EFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTSAATTL 422
            EFLH P KRF DF+ +R+EI+ +TD+  G +K +S+  I+L I+SP+V+++TL+DLPG+TKV V  QP  I   I  M+ SY+++P+C+ILA++PAN D+A SDA+++A   DP G RT G+ TKLDIMD+GT     L
Sbjct:   89 EFLHAPKKRFADFAAVRKEIEDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYVEKPNCIILAISPANQDIATSDAIKLAREVDPTGERTFGVATKLDIMDKGTDCLDVL 227          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: DRP1B_ARATH (Dynamin-related protein 1B OS=Arabidopsis thaliana GN=DRP1B PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.144e-36
Identity = 73/140 (52.14%), Postives = 104/140 (74.29%), Query Frame = 3
Query:    6 EFLHLPGKRFYDFSEIRREIQAQTDKEAG-GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTSAATTL 422
            EF+HLP K+F DF+ +R+EI  +TD+E G  +K +S   I L IFSP+V+++TLVDLPG+TKV V  QP  I   I  M+ S+I++P+C+ILA++PAN DLA SDA++I+   DP G RT G++TK+D+MD+GT+A   L
Sbjct:   87 EFMHLPKKKFTDFAAVRQEISDETDRETGRSSKVISTVPIHLSIFSPNVVNLTLVDLPGLTKVAVDGQPESIVQDIENMVRSFIEKPNCIILAISPANQDLATSDAIKISREVDPKGDRTFGVLTKIDLMDQGTNAVDIL 226          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: DYNB_DICDI (Dynamin-B OS=Dictyostelium discoideum GN=dymB PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.951e-36
Identity = 74/141 (52.48%), Postives = 104/141 (73.76%), Query Frame = 3
Query:    3 GEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTSAATTLI 425
            GEF H    RF +F EI+ EI+ +T++ AG NK +S + I LKI+SP V+ +TLVDLPG+T+V + +QP DIE +I++MI+ YI  P+ +ILA+TPAN D+  SDAL++A   DP G RTIG++TKLD+MD+GT A   L+
Sbjct:  236 GEFGHTGTNRF-NFQEIKEEIERETERIAGPNKDISSEPIVLKIYSPKVVPLTLVDLPGLTRVAIEDQPPDIEEKIKSMIIDYISNPNSIILAITPANQDIVTSDALKLAQQVDPLGKRTIGVLTKLDLMDKGTDAIDILL 375          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: MX2_RAT (Interferon-induced GTP-binding protein Mx2 OS=Rattus norvegicus GN=Mx2 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 7.431e-28
Identity = 62/122 (50.82%), Postives = 84/122 (68.85%), Query Frame = 3
Query:   39 DFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGT 404
            D SE+   I    +  AG   G+SDK I L + SPHV D+TL+DLPGIT+V VG QPADI  +I+ +I +YI++   + L V P+N D+A ++AL +A   DPDG RTIGI+TK D++DRGT
Sbjct:  133 DPSEVEEAINTGQNHIAGVGLGISDKLISLDVSSPHVPDLTLIDLPGITRVAVGNQPADIGRQIKRLITNYIQKQETINLVVVPSNVDIATTEALSMAQKVDPDGDRTIGILTKPDLVDRGT 254          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: MX3_RAT (Interferon-induced GTP-binding protein Mx3 OS=Rattus norvegicus GN=Mx3 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.656e-27
Identity = 61/122 (50.00%), Postives = 84/122 (68.85%), Query Frame = 3
Query:   39 DFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGT 404
            D SE+   I    +  AG   G+SDK I L + SPHV D+TL+DLPGIT+V VG QP+DI  +I+ +I +YI++   + L V P+N D+A ++AL +A   DPDG RTIGI+TK D++DRGT
Sbjct:  133 DPSEVEEAINTGQNHIAGVGLGISDKLISLDVSSPHVPDLTLIDLPGITRVAVGNQPSDIGRQIKRLITNYIQKQETINLVVVPSNVDIATTEALSMAQEVDPDGDRTIGILTKPDLVDRGT 254          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: MX1_CANFA (Interferon-induced GTP-binding protein Mx1 OS=Canis familiaris GN=MX1 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.817e-27
Identity = 61/122 (50.00%), Postives = 82/122 (67.21%), Query Frame = 3
Query:   39 DFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGT 404
            D SE+  EI    D  AG  +G+S + I L++ SPHV D+TL+DLPGIT+V VG QPADI  + + +I  YI +   + L V P N D+A ++AL +A   DPDG RTIGI+TK D++DRGT
Sbjct:  131 DPSEVEVEINKAQDAIAGEGQGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPADIGRQTKQLIRKYILKQETINLVVVPCNVDIATTEALSMAQEVDPDGDRTIGILTKPDLVDRGT 252          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: MX1_BOVIN (Interferon-induced GTP-binding protein Mx1 OS=Bos taurus GN=MX1 PE=2 SV=4)

HSP 1 Score: 118.627 bits (296), Expect = 1.073e-26
Identity = 59/122 (48.36%), Postives = 84/122 (68.85%), Query Frame = 3
Query:   39 DFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGT 404
            D S++ +EI       AG   G+S + I L++ SPHV D+TL+DLPGIT+V VG QP DIE +I+++I  YI +   + L V PAN D+A ++AL++A   DP G RTIGI+TK D++D+GT
Sbjct:  124 DASQVEKEISEAQIAIAGEGTGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPPDIEYQIKSLIRKYILRQETINLVVVPANVDIATTEALRMAQEVDPQGDRTIGILTKPDLVDKGT 245          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: MX1_SHEEP (Interferon-induced GTP-binding protein Mx1 OS=Ovis aries GN=MX1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.401e-26
Identity = 59/122 (48.36%), Postives = 84/122 (68.85%), Query Frame = 3
Query:   39 DFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGT 404
            D S++ +EI       AG   G+S + I L++ SPHV D+TL+DLPGIT+V VG QP DIE +I+++I  YI +   + L V PAN D+A ++AL++A   DP G RTIGI+TK D++D+GT
Sbjct:  130 DASQVEKEISEAQIAIAGEGMGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPHDIEYQIKSLIRKYILRQETINLVVVPANVDIATTEALRMAQDVDPQGDRTIGILTKPDLVDKGT 251          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: MX1_PIG (Interferon-induced GTP-binding protein Mx1 OS=Sus scrofa GN=MX1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.401e-26
Identity = 58/122 (47.54%), Postives = 85/122 (69.67%), Query Frame = 3
Query:   39 DFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGT 404
            D S++ +E+ A     AG   G+S + I L++ SPHV D+TL+DLPGIT+V VG QP DIE +I+++I  YI +   + L V P N D+A ++AL++A   DP+G RTIGI+TK D++D+GT
Sbjct:  136 DASQVEKEVSAAQIAIAGEGVGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPYDIEYQIKSLIKKYICKQETINLVVVPCNVDIATTEALRMAQEVDPEGDRTIGILTKPDLVDKGT 257          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: MX1_OTABY (Interferon-induced GTP-binding protein Mx1 OS=Otaria byronia GN=MX1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.830e-26
Identity = 60/124 (48.39%), Postives = 83/124 (66.94%), Query Frame = 3
Query:   39 DFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTSA 410
            D SE+  EI    +  AG  +G+S + I L++ SPHV D+TL+DLPGIT+V VG QPADI  + + +I  YI +   + L V P N D+A ++AL +A   DPDG RTIGI+TK D++DRGT +
Sbjct:  133 DPSEVEVEINKAQNAIAGEGQGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPADIGHQTKKLIKKYILKQETINLVVVPCNVDIATTEALSMAQEVDPDGDRTIGILTKPDLVDRGTES 256          
The following BLAST results are available for this feature:
BLAST of CB250308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
DRP1C_ARATH3.931e-3751.08Dynamin-related protein 1C OS=Arabidopsis thaliana... [more]
DRP1B_ARATH1.144e-3652.14Dynamin-related protein 1B OS=Arabidopsis thaliana... [more]
DYNB_DICDI1.951e-3652.48Dynamin-B OS=Dictyostelium discoideum GN=dymB PE=3... [more]
MX2_RAT7.431e-2850.82Interferon-induced GTP-binding protein Mx2 OS=Ratt... [more]
MX3_RAT1.656e-2750.00Interferon-induced GTP-binding protein Mx3 OS=Ratt... [more]
MX1_CANFA4.817e-2750.00Interferon-induced GTP-binding protein Mx1 OS=Cani... [more]
MX1_BOVIN1.073e-2648.36Interferon-induced GTP-binding protein Mx1 OS=Bos ... [more]
MX1_SHEEP1.401e-2648.36Interferon-induced GTP-binding protein Mx1 OS=Ovis... [more]
MX1_PIG1.401e-2647.54Interferon-induced GTP-binding protein Mx1 OS=Sus ... [more]
MX1_OTABY1.830e-2648.39Interferon-induced GTP-binding protein Mx1 OS=Otar... [more]

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Properties
Property NameValue
Genbank descriptionEST0092 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ129 similar to dynamin-like protein ADL2 (acc# BAB86118), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250308 ID=CB250308; Name=CB250308; organism=Citrus sinensis; type=EST; length=436bp
ACGGCGAGTTCTTGCACTTGCCTGGGAAAAGGTTTTATGATTTTTCCGAG
ATCAGGAGAGAGATTCAGGCTCAAACTGACAAGGAAGCTGGAGGAAACAA
AGGTGTGTCAGACAAGCAAATCCGTTTGAAGATTTTTTCACCTCACGTTC
TTGATATCACACTTGTGGATCTGCCTGGTATAACAAAGGTCCCAGTTGGT
GAGCAGCCAGCTGATATTGAAGCACGAATTAGAACGATGATTATGTCATA
TATCAAGCAACCAAGTTGTCTAATTCTTGCAGTTACACCGGCAAATTCAG
ATTTGGCAAACTCAGATGCCCTTCAAATTGCTGGAATTGCTGATCCGGAT
GGTTATAGAACCATAGGCATAATCACAAAGTTGGATATTATGGACAGAGG
TACCTCGGCCGCGACCACGCTAATCACTAGTGAATT
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