CB250308

Overview
NameCB250308
Unique NameCB250308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length436
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5968 contig Csv1_Contig5968:474..909. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: MX1_MOUSE (Interferon-induced GTP-binding protein Mx1 OS=Mus musculus GN=Mx1 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.550e-25
Identity = 58/121 (47.93%), Postives = 83/121 (68.60%), Query Frame = 3
Query:   39 DFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG 401
            D SE+   I    +  AG   G+SDK I L + SP+V D+TL+DLPGIT+V VG QPADI  +I+ +I +YI++   + L V P+N D+A ++AL +A   DP+G RTIG++TK D++DRG
Sbjct:  101 DPSEVEEAINKGQNFIAGVGLGISDKLISLDVSSPNVPDLTLIDLPGITRVAVGNQPADIGRQIKRLIKTYIQKQETINLVVVPSNVDIATTEALSMAQEVDPEGDRTIGVLTKPDLVDRG 221          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: MX1_MACMU (Interferon-induced GTP-binding protein Mx1 OS=Macaca mulatta GN=MX1 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.024e-25
Identity = 58/122 (47.54%), Postives = 83/122 (68.03%), Query Frame = 3
Query:   39 DFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGT 404
            D SE+ +EI    +  AG   G+S + I L+I S  V D+TL+DLPGIT+V VG QP DI  +I+T+I  YI++   + L V P+N D+A ++AL +A   DP+G RTIGI+TK D++D+GT
Sbjct:  135 DASEVEKEINKAQNTIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPPDIGYKIKTLIRKYIQRQETINLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGT 256          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: MX2_HUMAN (Interferon-induced GTP-binding protein Mx2 OS=Homo sapiens GN=MX2 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.452e-25
Identity = 56/122 (45.90%), Postives = 81/122 (66.39%), Query Frame = 3
Query:   39 DFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGT 404
            D  ++ +EI    +  AG  +G+S + I L+I SP V D+T++DLPGIT+V V  QP DI  +I+ +I  YI++   + L V P N D+A ++AL +A   DP+G RTIGI+TK D+MDRGT
Sbjct:  182 DPGQVEKEIHKAQNVMAGNGRGISHELISLEITSPEVPDLTIIDLPGITRVAVDNQPRDIGLQIKALIKKYIQRQQTINLVVVPCNVDIATTEALSMAHEVDPEGDRTIGILTKPDLMDRGT 303          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: MX2_MACMU (Interferon-induced GTP-binding protein Mx2 OS=Macaca mulatta GN=MX2 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.690e-25
Identity = 56/122 (45.90%), Postives = 80/122 (65.57%), Query Frame = 3
Query:   39 DFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGT 404
            D  ++ +EI    +  AG   G+S + I L+I SP V D+T++DLPGI +V VG QP DI  +I+ +I  YI++   + L V P N D+A ++AL +A   DP+G RTIGI+TK D+MDRGT
Sbjct:  182 DPGQVEKEIHKAQNVMAGNGLGISHELISLEITSPEVPDLTIIDLPGIARVAVGNQPRDIGLQIKALIKRYIQRQQTINLVVVPCNVDIATTEALSMAHEVDPEGDRTIGILTKPDLMDRGT 303          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: MX2_BOVIN (Interferon-induced GTP-binding protein Mx2 OS=Bos taurus GN=MX2 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.713e-24
Identity = 57/120 (47.50%), Postives = 80/120 (66.67%), Query Frame = 3
Query:   45 SEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGT 404
            SE+  EI+   +  AG   G+S + I L+I SP V D+TL+DLPGIT+V V  QP DI  +I+ +I  YI++   + L V P N D+A ++AL +A   DPDG RTIGI+TK D++D+GT
Sbjct:  180 SEVEWEIRRAQNIIAGNGLGISHELINLEITSPEVPDLTLIDLPGITRVAVENQPQDIGLQIKALIKKYIQRQETINLVVVPCNVDIATTEALSMAQEVDPDGDRTIGILTKPDLVDKGT 299          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: MX_PERFL (Interferon-induced GTP-binding protein Mx (Fragment) OS=Perca fluviatilis GN=mx PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.817e-24
Identity = 55/126 (43.65%), Postives = 84/126 (66.67%), Query Frame = 3
Query:   27 KRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGT 404
            K   D +++ ++I+   D+ AG   G+SD  I L+I SP V D+TL+DLPGI +V V  QP +I  +I+ +I  +IK+   + L V P N D+A ++AL++A   DPDG RT+GI+TK D++D+GT
Sbjct:   96 KEIEDPADVEKKIRDAQDEMAGVGVGISDDLISLEIASPDVPDLTLIDLPGIARVAVKGQPENIGDQIKRLIQKFIKRQETISLVVVPCNVDIATTEALKMAQEVDPDGERTLGILTKPDLVDKGT 221          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: MX_EPICO (Interferon-induced GTP-binding protein Mx OS=Epinephelus coioides GN=mx PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.817e-24
Identity = 56/126 (44.44%), Postives = 82/126 (65.08%), Query Frame = 3
Query:   27 KRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGT 404
            K   D S++  +I+   D+ AG   G+SD  I L+I SP V D+TL+DLPGI +V V  QP DI  +I+ +I  +I +   + L V P N D+A ++AL++A   DPDG RT+GI+TK D++D+GT
Sbjct:   94 KELEDPSDVENKIREAQDEMAGVGVGISDDLISLEIASPDVPDLTLIDLPGIARVAVKGQPEDIGKQIKGLIQRFITRQETISLVVVPCNVDIATTEALKMAQEVDPDGERTLGILTKPDLVDKGT 219          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: MXA_DANRE (Interferon-induced GTP-binding protein MxA OS=Danio rerio GN=mxa PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.474e-23
Identity = 53/124 (42.74%), Postives = 83/124 (66.94%), Query Frame = 3
Query:   33 FYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGT 404
            F D +E+ ++I+   D+ AG   G+S++ I L+I S  V D+TL+DLPGI +V V  QP +I  +I+ +I  ++ +   + L V P N D+A ++ALQ+A   DPDG RT+GI+TK D++D+GT
Sbjct:  100 FDDPAEVEKKIRQAQDEMAGAGVGISEELISLQITSADVPDLTLIDLPGIARVAVKGQPENIGDQIKRLIRKFVTRQETINLVVVPCNVDIATTEALQMAQAEDPDGERTLGILTKPDLVDKGT 223          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: MX_CTEID (Interferon-induced GTP-binding protein Mx OS=Ctenopharyngodon idella GN=mx PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 3.231e-23
Identity = 55/125 (44.00%), Postives = 79/125 (63.20%), Query Frame = 3
Query:   27 KRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG 401
            K+  D +EI   +       AG  +G+S + I L+I S  V D+TL+DLPGI +V  G QP DIE +I+ +I  YIK+   + L V PAN D+A ++ALQ+A   D  G RT+GI+TK D++D+G
Sbjct:  107 KKLKDPAEIENAVLKAQTVLAGTGEGISHEMITLEIQSSDVPDLTLIDLPGIARVATGNQPKDIEKQIKDLIEKYIKRQETISLVVVPANIDIATTEALQMASKVDSTGQRTLGILTKPDLVDKG 231          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: MXB_DANRE (Interferon-induced GTP-binding protein MxB OS=Danio rerio GN=mxb PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 4.220e-23
Identity = 53/124 (42.74%), Postives = 84/124 (67.74%), Query Frame = 3
Query:   33 FYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGT 404
            F D +E+ ++I+   D+ AG   G+S++ I L+I S +V D+TL+DLPGI +V V  QP +I  +I+ +I  +I +   + L V P N D+A ++ALQ+A   DP+G RT+GI+TK D++D+GT
Sbjct:  100 FDDPAEVEKKIREAQDEMAGAGVGISEELISLQITSANVPDLTLIDLPGIARVAVKGQPENIGDQIKRLIRMFITKQETINLVVVPCNVDIATTEALQMAQAEDPEGERTLGILTKPDLVDKGT 223          
The following BLAST results are available for this feature:
BLAST of CB250308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
MX1_MOUSE1.550e-2547.93Interferon-induced GTP-binding protein Mx1 OS=Mus ... [more]
MX1_MACMU2.024e-2547.54Interferon-induced GTP-binding protein Mx1 OS=Maca... [more]
MX2_HUMAN3.452e-2545.90Interferon-induced GTP-binding protein Mx2 OS=Homo... [more]
MX2_MACMU7.690e-2545.90Interferon-induced GTP-binding protein Mx2 OS=Maca... [more]
MX2_BOVIN1.713e-2447.50Interferon-induced GTP-binding protein Mx2 OS=Bos ... [more]
MX_PERFL3.817e-2443.65Interferon-induced GTP-binding protein Mx (Fragmen... [more]
MX_EPICO3.817e-2444.44Interferon-induced GTP-binding protein Mx OS=Epine... [more]
MXA_DANRE2.474e-2342.74Interferon-induced GTP-binding protein MxA OS=Dani... [more]
MX_CTEID3.231e-2344.00Interferon-induced GTP-binding protein Mx OS=Cteno... [more]
MXB_DANRE4.220e-2342.74Interferon-induced GTP-binding protein MxB OS=Dani... [more]

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Properties
Property NameValue
Genbank descriptionEST0092 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ129 similar to dynamin-like protein ADL2 (acc# BAB86118), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250308 ID=CB250308; Name=CB250308; organism=Citrus sinensis; type=EST; length=436bp
ACGGCGAGTTCTTGCACTTGCCTGGGAAAAGGTTTTATGATTTTTCCGAG
ATCAGGAGAGAGATTCAGGCTCAAACTGACAAGGAAGCTGGAGGAAACAA
AGGTGTGTCAGACAAGCAAATCCGTTTGAAGATTTTTTCACCTCACGTTC
TTGATATCACACTTGTGGATCTGCCTGGTATAACAAAGGTCCCAGTTGGT
GAGCAGCCAGCTGATATTGAAGCACGAATTAGAACGATGATTATGTCATA
TATCAAGCAACCAAGTTGTCTAATTCTTGCAGTTACACCGGCAAATTCAG
ATTTGGCAAACTCAGATGCCCTTCAAATTGCTGGAATTGCTGATCCGGAT
GGTTATAGAACCATAGGCATAATCACAAAGTTGGATATTATGGACAGAGG
TACCTCGGCCGCGACCACGCTAATCACTAGTGAATT
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