CB250308

Overview
NameCB250308
Unique NameCB250308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length436
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: MX_ANAPL (Interferon-induced GTP-binding protein Mx OS=Anas platyrhynchos GN=MX PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.960e-20
Identity = 51/120 (42.50%), Postives = 74/120 (61.67%), Query Frame = 3
Query:   45 SEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGT 404
            SE+   I+   D  AG    +S + I L+I SP+V D+TL+DLPGI +V +  QP DI  +I+ +I   I     + L V P N D+A ++AL++A   DP G RT+GI+TK D++D GT
Sbjct:  198 SEVENAIRNAQDVVAGTKGNISGELISLEICSPYVPDLTLIDLPGIARVAMRNQPQDIGEQIKKLIKKIISSKETINLVVVPCNVDIATTEALKMAQEVDPKGERTLGILTKPDLVDIGT 317          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: MX2_ICTPU (Interferon-induced GTP-binding protein Mx2 OS=Ictalurus punctatus GN=mx2 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.960e-20
Identity = 48/129 (37.21%), Postives = 83/129 (64.34%), Query Frame = 3
Query:   39 DFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTSAATTLI 425
            D +++ + I+   ++ AG   G+SDK I L++ S +V D+T++DLPGIT+V V +QP +I  + + +I  +I +   + L V P N D+A ++AL++A   DP+G RT G++TK D++D+G+      I
Sbjct:   97 DPADVEQMIRKAQNEIAGTGMGISDKLISLEVTSSNVPDLTVIDLPGITRVAVKDQPENIGDQSKRLIKKFITKQETINLVVVPCNVDIATTEALKMALEVDPNGERTFGVLTKPDLVDKGSEETVVSI 225          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: MGM1_YEAST (Dynamin-like GTPase MGM1, mitochondrial OS=Saccharomyces cerevisiae GN=MGM1 PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 4.367e-20
Identity = 53/128 (41.41%), Postives = 83/128 (64.84%), Query Frame = 3
Query:   21 PGKRFY---DFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 395
            P  R Y   DF E++R +  + +     ++ VS++ I+L I S  V D++LVDLPG  +V   +QP +++ +IR +   Y+  P+ +ILA++ A+ DLANS AL+ +  ADP G RTIG+ITKLD++D
Sbjct:  266 PSMRLYNIKDFKEVKRMLM-ELNMAVPTSEAVSEEPIQLTIKSSRVPDLSLVDLPGYIQVEAADQPIELKTKIRDLCEKYLTAPN-IILAISAADVDLANSSALKASKAADPKGLRTIGVITKLDLVD 391          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: MSP1_SCHPO (Protein msp1, mitochondrial OS=Schizosaccharomyces pombe GN=msp1 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 9.728e-20
Identity = 51/130 (39.23%), Postives = 84/130 (64.62%), Query Frame = 3
Query:    3 GEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIM 392
            GEF  +   +  DFS+I+  I    +     ++GV D  IRL I++ H+ +++L+DLPG  ++   +QPAD++ +I  +   YI++P+ +ILAV  A+ DLANS AL+ +   DP G RTIG++TK+D++
Sbjct:  316 GEFSGVQLGKITDFSKIQH-ILTDLNMAVPSSQGVDDNPIRLTIYASHIPNLSLIDLPGYIQIHSEDQPADLDMKISKLCEKYIREPN-IILAVCAADVDLANSAALRASRRVDPLGLRTIGVVTKMDLV 443          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: OPA1_DANRE (Dynamin-like 120 kDa protein, mitochondrial OS=Danio rerio GN=opa1 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.839e-11
Identity = 34/128 (26.56%), Postives = 65/128 (50.78%), Query Frame = 3
Query:   39 DFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTSAATTL 422
            D + +R EI+ +  K     + VS + I L +  P +  + LVDLPG+         AD +  I ++  +Y++ P+ +IL +   + D   S    +    DP G RTI ++TK+D+ ++  ++ + +
Sbjct:  361 DLAALRHEIELRMRKSVKEGQTVSPETISLSVKGPGIQRMVLVDLPGVISTVTTGMAADTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPQGKRTIFVLTKVDLAEKNLASPSRI 488          
The following BLAST results are available for this feature:
BLAST of CB250308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
MX_ANAPL1.960e-2042.50Interferon-induced GTP-binding protein Mx OS=Anas ... [more]
MX2_ICTPU1.960e-2037.21Interferon-induced GTP-binding protein Mx2 OS=Icta... [more]
MGM1_YEAST4.367e-2041.41Dynamin-like GTPase MGM1, mitochondrial OS=Sacchar... [more]
MSP1_SCHPO9.728e-2039.23Protein msp1, mitochondrial OS=Schizosaccharomyces... [more]
OPA1_DANRE4.839e-1126.56Dynamin-like 120 kDa protein, mitochondrial OS=Dan... [more]

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Properties
Property NameValue
Genbank descriptionEST0092 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ129 similar to dynamin-like protein ADL2 (acc# BAB86118), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250308 ID=CB250308; Name=CB250308; organism=Citrus sinensis; type=EST; length=436bp
ACGGCGAGTTCTTGCACTTGCCTGGGAAAAGGTTTTATGATTTTTCCGAG
ATCAGGAGAGAGATTCAGGCTCAAACTGACAAGGAAGCTGGAGGAAACAA
AGGTGTGTCAGACAAGCAAATCCGTTTGAAGATTTTTTCACCTCACGTTC
TTGATATCACACTTGTGGATCTGCCTGGTATAACAAAGGTCCCAGTTGGT
GAGCAGCCAGCTGATATTGAAGCACGAATTAGAACGATGATTATGTCATA
TATCAAGCAACCAAGTTGTCTAATTCTTGCAGTTACACCGGCAAATTCAG
ATTTGGCAAACTCAGATGCCCTTCAAATTGCTGGAATTGCTGATCCGGAT
GGTTATAGAACCATAGGCATAATCACAAAGTTGGATATTATGGACAGAGG
TACCTCGGCCGCGACCACGCTAATCACTAGTGAATT
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