CB250317

Overview
NameCB250317
Unique NameCB250317
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length485
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ASTC_SALNS (Succinylornithine transaminase OS=Salmonella newport (strain SL254) GN=astC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.941e-13
Identity = 48/154 (31.17%), Postives = 71/154 (46.10%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            I++ +NA+HG    T+ A  Q  +   F  +   + HA   D                   LID  T   +     E +QG GG+I     +L  + +   +   L I DEVQ G  RTG   + +  +GV PDI+T AK +G G P+GA++TT
Sbjct:  131 IVAFKNAFHGRTLFTVSAGGQPTYSQDFAPLPPDIRHAAYND-------------LNSASALIDDNTCAVIV----EPVQGEGGVIPATKAFLQGLRELCDRYQALLIFDEVQTGVGRTGE-LYAYMHYGVTPDILTTAKALGGGFPIGAMLTT 266          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ASTC_SALHS (Succinylornithine transaminase OS=Salmonella heidelberg (strain SL476) GN=astC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.941e-13
Identity = 48/154 (31.17%), Postives = 71/154 (46.10%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            I++ +NA+HG    T+ A  Q  +   F  +   + HA   D                   LID  T   +     E +QG GG+I     +L  + +   +   L I DEVQ G  RTG   + +  +GV PDI+T AK +G G P+GA++TT
Sbjct:  131 IVAFKNAFHGRTLFTVSAGGQPTYSQDFAPLPPDIRHAAYND-------------LNSASALIDDNTCAVIV----EPVQGEGGVIPATKAFLQGLRELCDRHQALLIFDEVQTGVGRTGE-LYAYMHYGVTPDILTTAKALGGGFPIGAMLTT 266          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ASTC_SALG2 (Succinylornithine transaminase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=astC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.941e-13
Identity = 48/154 (31.17%), Postives = 71/154 (46.10%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            I++ +NA+HG    T+ A  Q  +   F  +   + HA   D                   LID  T   +     E +QG GG+I     +L  + +   +   L I DEVQ G  RTG   + +  +GV PDI+T AK +G G P+GA++TT
Sbjct:  131 IVAFKNAFHGRTLFTVSAGGQPTYSQDFAPLPPDIRHAAYND-------------LNSASALIDDNTCAVIV----EPVQGEGGVIPATKAFLQGLRELCDRHQALLIFDEVQTGVGRTGE-LYAYMHYGVTPDILTTAKALGGGFPIGAMLTT 266          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ASTC_SALEP (Succinylornithine transaminase OS=Salmonella enteritidis PT4 (strain P125109) GN=astC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.941e-13
Identity = 48/154 (31.17%), Postives = 71/154 (46.10%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            I++ +NA+HG    T+ A  Q  +   F  +   + HA   D                   LID  T   +     E +QG GG+I     +L  + +   +   L I DEVQ G  RTG   + +  +GV PDI+T AK +G G P+GA++TT
Sbjct:  131 IVAFKNAFHGRTLFTVSAGGQPTYSQDFAPLPPDIRHAAYND-------------LNSASALIDDNTCAVIV----EPVQGEGGVIPATKAFLQGLRELCDRHQALLIFDEVQTGVGRTGE-LYAYMHYGVTPDILTTAKALGGGFPIGAMLTT 266          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ASTC_SALDC (Succinylornithine transaminase OS=Salmonella dublin (strain CT_02021853) GN=astC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.941e-13
Identity = 48/154 (31.17%), Postives = 71/154 (46.10%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            I++ +NA+HG    T+ A  Q  +   F  +   + HA   D                   LID  T   +     E +QG GG+I     +L  + +   +   L I DEVQ G  RTG   + +  +GV PDI+T AK +G G P+GA++TT
Sbjct:  131 IVAFKNAFHGRTLFTVSAGGQPTYSQDFAPLPPDIRHAAYND-------------LNSASALIDDNTCAVIV----EPVQGEGGVIPATKAFLQGLRELCDRHQALLIFDEVQTGVGRTGE-LYAYMHYGVTPDILTTAKALGGGFPIGAMLTT 266          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ASTC_SALCH (Succinylornithine transaminase OS=Salmonella choleraesuis GN=astC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.941e-13
Identity = 48/154 (31.17%), Postives = 71/154 (46.10%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            I++ +NA+HG    T+ A  Q  +   F  +   + HA   D                   LID  T   +     E +QG GG+I     +L  + +   +   L I DEVQ G  RTG   + +  +GV PDI+T AK +G G P+GA++TT
Sbjct:  131 IVAFKNAFHGRTLFTVSAGGQPTYSQDFAPLPPDIRHAAYND-------------LNSASALIDDNTCAVIV----EPVQGEGGVIPATKAFLQGLRELCDRHQALLIFDEVQTGVGRTGE-LYAYMHYGVTPDILTTAKALGGGFPIGAMLTT 266          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ASTC_SALA4 (Succinylornithine transaminase OS=Salmonella agona (strain SL483) GN=astC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.941e-13
Identity = 48/154 (31.17%), Postives = 71/154 (46.10%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            I++ +NA+HG    T+ A  Q  +   F  +   + HA   D                   LID  T   +     E +QG GG+I     +L  + +   +   L I DEVQ G  RTG   + +  +GV PDI+T AK +G G P+GA++TT
Sbjct:  131 IVAFKNAFHGRTLFTVSAGGQPTYSQDFAPLPPDIRHAAYND-------------LNSASALIDDNTCAVIV----EPVQGEGGVIPATKAFLQGLRELCDRHQALLIFDEVQTGVGRTGE-LYAYMHYGVTPDILTTAKALGGGFPIGAMLTT 266          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ASTC_ECOSM (Succinylornithine transaminase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=astC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.941e-13
Identity = 47/154 (30.52%), Postives = 72/154 (46.75%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            I++ +NA+HG    T+ A  Q  +   F  +   +HHA   D                   LID  T   +     E IQG GG++  +  +L  + +   +   L I DEVQ G  RTG   + +  +GV PD++T AK +G G P+GA++ T
Sbjct:  131 IVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPPDIHHAAYND-------------INSASALIDDATCAVIV----EPIQGEGGVVPASNAFLQGLRELCDRHNALLIFDEVQTGVGRTGE-LYAYMHYGVTPDLLTTAKALGGGFPVGALLAT 266          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_SULSO (Acetylornithine/acetyl-lysine aminotransferase OS=Sulfolobus solfataricus GN=argD PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 6.941e-13
Identity = 44/158 (27.85%), Postives = 73/158 (46.20%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAV 475
            AR  T    I++ +N++HG + G +  T    ++              +P+  + G    +   +V  L     +   A  + E +QG GG+I     ++ ++ +  +K   L I DEVQ GF RTG   W ++   + PDI+T  K IG G P+ AV
Sbjct:  108 ARKITKRRKIVAFKNSFHGRSMGALSVTWNKKYR--------------EPFEPLIGPVEFLEYNNVDSLKSI--TEDTAAVIVEPVQGEGGVIPAKKEFVKSLREVTEKVNALLIIDEVQTGFGRTGK-IWAYQHFDIKPDILTAGKAIGGGFPVSAV 248          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_LACLA (Acetylornithine aminotransferase OS=Lactococcus lactis subsp. lactis GN=argD PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.941e-13
Identity = 51/150 (34.00%), Postives = 73/150 (48.67%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVV 478
            I++  + +HG   G M AT Q       +Q G    L P+     F         DV  L        +   + E IQG GG++ ++P ++ A+ KS ++ G L I DE+Q G  RTG  F  FE     PDI T+AK + NGIP GA++
Sbjct:  114 ILAFTDGFHGRTFGAMSATMQEK-----IQAGFSPLL-PNFVASPFN--------DVVALEQILEKEKIGAIIFEIIQGEGGVLPISPDFVEAL-KSCQQKGILLIIDEIQTGIGRTGKLF-AFEHFDFEPDIFTLAKALANGIPTGAML 247          
The following BLAST results are available for this feature:
BLAST of CB250317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 236
Match NameE-valueIdentityDescription
ASTC_SALNS6.941e-1331.17Succinylornithine transaminase OS=Salmonella newpo... [more]
ASTC_SALHS6.941e-1331.17Succinylornithine transaminase OS=Salmonella heide... [more]
ASTC_SALG26.941e-1331.17Succinylornithine transaminase OS=Salmonella galli... [more]
ASTC_SALEP6.941e-1331.17Succinylornithine transaminase OS=Salmonella enter... [more]
ASTC_SALDC6.941e-1331.17Succinylornithine transaminase OS=Salmonella dubli... [more]
ASTC_SALCH6.941e-1331.17Succinylornithine transaminase OS=Salmonella chole... [more]
ASTC_SALA46.941e-1331.17Succinylornithine transaminase OS=Salmonella agona... [more]
ASTC_ECOSM6.941e-1330.52Succinylornithine transaminase OS=Escherichia coli... [more]
ARGD_SULSO6.941e-1327.85Acetylornithine/acetyl-lysine aminotransferase OS=... [more]
ARGD_LACLA6.941e-1334.00Acetylornithine aminotransferase OS=Lactococcus la... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionEST0102 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ143 similar to putative aminotransferase (acc# NP_187498), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250317 ID=CB250317; Name=CB250317; organism=Citrus sinensis; type=EST; length=485bp
GGCAAGATTATATACCGGATGCAATGACATAATATCACTGAGAAACGCCT
ATCATGGAAACGCAGCTGGAACTATGGGTGCCACTGCTCAGTCCAACTGG
AAATTTAACGTTGTTCAGACTGGCGTTCATCATGCCTTGAACCCCGACCC
ATACAGAGGCGTGTTTGGTGCGGATGGCGAAATGTATGCTAAAGATGTTC
AAGATCTCATTGACTTTGGAACTTCTGGGCATGTTGCTGGTTTCCTTTCT
GAATCTATTCAGGGAGTGGGTGGCATTATAGAGTTGGCCCCAGGTTACCT
GCCTGCGGTTTATAAAAGCATTAAGAAAGCGGGAGGCCTTTGTATAGCTG
ATGAGGTTCAGGCTGGATTTGCCCGAACAGGGAGCCATTTCTGGGGATTT
GAGGCCCATGGTGTTGTTCCTGACATTGTGACAATGGCAAAGGGCATTGG
AAATGGTATCCCCCTTGGTGCAGTAGTAACTACTC
back to top