CB250317

Overview
NameCB250317
Unique NameCB250317
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length485
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_ECOLI (Acetylornithine/succinyldiaminopimelate aminotransferase OS=Escherichia coli (strain K12) GN=argD PE=1 SV=4)

HSP 1 Score: 70.4774 bits (171), Expect = 4.499e-12
Identity = 46/152 (30.26%), Postives = 72/152 (47.37%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            II+  NA+HG +  T+    Q  +              P P   +     +++A  V+ ++D     H    + E IQG GG+    P +L  + +   +   L + DEVQ G  RTG  F  +  +GV PDI+T AK +G G P+ A++TT
Sbjct:  134 IIAFHNAFHGRSLFTVSVGGQPKYS---------DGFGPKPADIIHVPFNDLHA--VKAVMD----DHTCAVVVEPIQGEGGVTAATPEFLQGLRELCDQHQALLVFDEVQCGMGRTGDLF-AYMHYGVTPDILTSAKALGGGFPISAMLTT 269          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_ECO57 (Acetylornithine/succinyldiaminopimelate aminotransferase OS=Escherichia coli O157:H7 GN=argD PE=3 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 4.499e-12
Identity = 46/152 (30.26%), Postives = 72/152 (47.37%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            II+  NA+HG +  T+    Q  +              P P   +     +++A  V+ ++D     H    + E IQG GG+    P +L  + +   +   L + DEVQ G  RTG  F  +  +GV PDI+T AK +G G P+ A++TT
Sbjct:  134 IIAFHNAFHGRSLFTVSVGGQPKYS---------DGFGPKPSDIIHVPFNDLHA--VKAVMD----DHTCAVVVEPIQGEGGVTAATPEFLQGLRELCDQHQALLVFDEVQCGMGRTGDLF-AYMHYGVTPDILTSAKALGGGFPISAMLTT 269          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ASTC_ESCF3 (Succinylornithine transaminase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=astC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.876e-12
Identity = 46/154 (29.87%), Postives = 71/154 (46.10%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            I++ +NA+HG    T+ A  Q  +   F  +   + HA   D                   LID  T   +     E IQG GG++  +  +L  + +   +   L I DEVQ G  RTG   + +  +GV PD++T AK +G G P+GA++ T
Sbjct:  131 IVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPPDIRHAAYND-------------LNSASALIDDSTCAVIV----EPIQGEGGVVPASNAFLQGLRELCDRHNALLIFDEVQTGVGRTGE-LYAYMHYGVTPDLLTTAKALGGGFPVGALLAT 266          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ASTC_ECO5E (Succinylornithine transaminase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=astC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.876e-12
Identity = 46/154 (29.87%), Postives = 71/154 (46.10%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            I++ +NA+HG    T+ A  Q  +   F  +   + HA   D                   LID  T   +     E IQG GG++  +  +L  + +   +   L I DEVQ G  RTG   + +  +GV PD++T AK +G G P+GA++ T
Sbjct:  131 IVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPPDIRHAAYND-------------INSASALIDDSTCAVIV----EPIQGEGGVVPASNAFLQGLRELCDRHNALLIFDEVQTGVGRTGE-LYAYMHYGVTPDLLTTAKALGGGFPVGALLAT 266          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ASTC_ECO57 (Succinylornithine transaminase OS=Escherichia coli O157:H7 GN=astC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.876e-12
Identity = 46/154 (29.87%), Postives = 71/154 (46.10%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            I++ +NA+HG    T+ A  Q  +   F  +   + HA   D                   LID  T   +     E IQG GG++  +  +L  + +   +   L I DEVQ G  RTG   + +  +GV PD++T AK +G G P+GA++ T
Sbjct:  131 IVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPPDIRHAAYND-------------INSASALIDDSTCAVIV----EPIQGEGGVVPASNAFLQGLRELCDRHNALLIFDEVQTGVGRTGE-LYAYMHYGVTPDLLTTAKALGGGFPVGALLAT 266          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ASTC_ECO27 (Succinylornithine transaminase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=astC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.876e-12
Identity = 46/154 (29.87%), Postives = 71/154 (46.10%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            I++ +NA+HG    T+ A  Q  +   F  +   + HA   D                   LID  T   +     E IQG GG++  +  +L  + +   +   L I DEVQ G  RTG   + +  +GV PD++T AK +G G P+GA++ T
Sbjct:  131 IVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPPDIRHAAYND-------------INSASALIDDATCAVIV----EPIQGEGGVVPASNAFLQGLRELCDRHNALLIFDEVQTGVGRTGE-LYAYMHYGVTPDLLTTAKALGGGFPVGALLAT 266          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_ECOL6 (Acetylornithine/succinyldiaminopimelate aminotransferase OS=Escherichia coli O6 GN=argD PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 5.876e-12
Identity = 46/152 (30.26%), Postives = 72/152 (47.37%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            II+  NA+HG +  T+    Q  +              P P   +     +++A  V+ ++D     H    + E IQG GG+    P +L  + +   +   L + DEVQ G  RTG  F  +  +GV PDI+T AK +G G P+ A++TT
Sbjct:  134 IIAFHNAFHGRSLFTVSVGGQPKYS---------DGFGPKPADIIHVPFNDLHA--VKAVMD----DHTCAVVVEPIQGEGGVTAATPEFLQGLRELCDQHQALLVFDEVQCGMGRTGDLF-AYMHYGVTPDILTSAKALGGGFPVSAMLTT 269          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_AGRT5 (Acetylornithine aminotransferase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=argD PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.876e-12
Identity = 54/152 (35.53%), Postives = 69/152 (45.39%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            II+   A+HG    T+ A  Q  +              P     V G D   +  DV D +    +   A  L E IQG GGI   A  +L  +     +   L I DEVQ G  RTG  F+ +E  GV PDI+ +AKGIG G PLGA + T
Sbjct:  125 IITFEGAFHGRTLATIAAGGQQKYL---------EGFGPK----VEGFDQVPFG-DV-DALKAAITAETAALLIEPIQGEGGIRAPAKEFLQLLRSLCDEHDLLLIFDEVQTGVGRTGK-FFAYEQTGVAPDIMAVAKGIGGGFPLGACLAT 260          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ASTC_YERE8 (Succinylornithine transaminase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=astC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.674e-12
Identity = 46/156 (29.49%), Postives = 70/156 (44.87%), Query Frame = 2
Query:   23 NDIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            N I++ RNA+HG    T+ A  Q  +   F  +  G+ H +  D       A  E    D                + E IQG GG++     +L  +     +   + I DEVQ G  RTG   + +  +GV PD++T AK +G G P+ A++TT
Sbjct:  137 NQIVAFRNAFHGRTLFTVSAGGQPKYSQDFAPLPGGISHGIFNDL------ASAEALITD-----------QTCAVIVEPIQGEGGVLPADSEFLHGLRALCDRHNAVLIFDEVQTGVGRTGE-LYAYMHYGVTPDVLTSAKALGGGFPIAAMLTT 274          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ASTC_PHOLL (Succinylornithine transaminase OS=Photorhabdus luminescens subsp. laumondii GN=astC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.674e-12
Identity = 45/153 (29.41%), Postives = 73/153 (47.71%), Query Frame = 2
Query:   23 NDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVT 481
            N+IIS ++++HG    T+    Q   K++     +   +   PY  +               I    S +    + E I G GG+I   P +L  +     +   L I DE+Q G  RTG + + ++ +GV PDI+T AKG+G G P+GA++T
Sbjct:  129 NEIISFKDSFHGRTLFTVTVGGQP--KYSQDYAPLPQEITHLPYNNL-------------SAIREHISENTCAVIVEPIIGEGGVIPADPAFLQELRTLCDRFQALLIFDEIQTGVGRTG-YLYAYQEYGVEPDILTSAKGLGGGFPIGAMLT 265          
The following BLAST results are available for this feature:
BLAST of CB250317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 236
Match NameE-valueIdentityDescription
ARGD_ECOLI4.499e-1230.26Acetylornithine/succinyldiaminopimelate aminotrans... [more]
ARGD_ECO574.499e-1230.26Acetylornithine/succinyldiaminopimelate aminotrans... [more]
ASTC_ESCF35.876e-1229.87Succinylornithine transaminase OS=Escherichia ferg... [more]
ASTC_ECO5E5.876e-1229.87Succinylornithine transaminase OS=Escherichia coli... [more]
ASTC_ECO575.876e-1229.87Succinylornithine transaminase OS=Escherichia coli... [more]
ASTC_ECO275.876e-1229.87Succinylornithine transaminase OS=Escherichia coli... [more]
ARGD_ECOL65.876e-1230.26Acetylornithine/succinyldiaminopimelate aminotrans... [more]
ARGD_AGRT55.876e-1235.53Acetylornithine aminotransferase OS=Agrobacterium ... [more]
ASTC_YERE87.674e-1229.49Succinylornithine transaminase OS=Yersinia enteroc... [more]
ASTC_PHOLL7.674e-1229.41Succinylornithine transaminase OS=Photorhabdus lum... [more]

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Properties
Property NameValue
Genbank descriptionEST0102 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ143 similar to putative aminotransferase (acc# NP_187498), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250317 ID=CB250317; Name=CB250317; organism=Citrus sinensis; type=EST; length=485bp
GGCAAGATTATATACCGGATGCAATGACATAATATCACTGAGAAACGCCT
ATCATGGAAACGCAGCTGGAACTATGGGTGCCACTGCTCAGTCCAACTGG
AAATTTAACGTTGTTCAGACTGGCGTTCATCATGCCTTGAACCCCGACCC
ATACAGAGGCGTGTTTGGTGCGGATGGCGAAATGTATGCTAAAGATGTTC
AAGATCTCATTGACTTTGGAACTTCTGGGCATGTTGCTGGTTTCCTTTCT
GAATCTATTCAGGGAGTGGGTGGCATTATAGAGTTGGCCCCAGGTTACCT
GCCTGCGGTTTATAAAAGCATTAAGAAAGCGGGAGGCCTTTGTATAGCTG
ATGAGGTTCAGGCTGGATTTGCCCGAACAGGGAGCCATTTCTGGGGATTT
GAGGCCCATGGTGTTGTTCCTGACATTGTGACAATGGCAAAGGGCATTGG
AAATGGTATCCCCCTTGGTGCAGTAGTAACTACTC
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