CB250317

Overview
NameCB250317
Unique NameCB250317
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length485
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_METAC (Acetylornithine aminotransferase OS=Methanosarcina acetivorans GN=argD PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 2.305e-16
Identity = 53/158 (33.54%), Postives = 77/158 (48.73%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAV 475
            AR+ TG +  ++  +++HG   G +  T              H ++  DP+     ++         + I    S + A  + E IQG GGI    PGYL  V +   + G L I DEVQ GF RTG+ F   E  GV PDI++M+K IG G P+GA+
Sbjct:  128 ARVATGKSAFVAAEHSFHGRTIGALSVT--------------HKSMYRDPFMPPVSSETTFVPYSDAEAIRQAISENTAAVILEPIQGEGGINIPDPGYLKEVREICDETGALLIFDEVQTGFGRTGTWFCK-EQFGVEPDIMSMSKAIGGGFPMGAI 270          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: GABT_MYCLE (4-aminobutyrate aminotransferase OS=Mycobacterium leprae GN=gabT PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.932e-16
Identity = 60/167 (35.93%), Postives = 84/167 (50.30%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQS---NWKFNVVQTGVHHALNPDPYRGVF-----GADGEMYAKDVQDLIDFGTSGH-VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAV 475
            AR YT    +++  +AYHG    TM  TA+S      F      ++ A    PYR          DG++      ++I+       +A  + E IQG GG I  A G+L  +    +K   + IADEVQ GFARTG+ F   E  G+VPD++  AKGI +G+PL AV
Sbjct:  137 ARSYTRKPAVVAFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEIYRAPLSYPYRDGLLNKDLATDGKLAGARAINVIEKQVGADDLAAVIIEPIQGEGGFIVPAEGFLATLLDWCRKNNVMFIADEVQTGFARTGAMF-ACEHDGIVPDLICTAKGIADGLPLAAV 302          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_STRMU (Acetylornithine aminotransferase OS=Streptococcus mutans GN=argD PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 3.932e-16
Identity = 54/161 (33.54%), Postives = 82/161 (50.93%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVV 478
            AR  TG  +II+ +N++HG   G+M AT Q   K  F       H+A+  D                V+ L+   T    A  + E +QG  G++     ++ A+    +K G L I DEVQ G  RTG   + F+ +G+ PDI T+AKG+ NG+P+GA++
Sbjct:  104 ARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKVGFGDAVPHFHYAVFND-------------LNSVKALVTENT----AAVMLELVQGESGVLPAEQDFVTALADYCQKNGLLLIIDEVQTGMGRTGK-LYAFQHYGIEPDIFTLAKGLANGVPVGAML 246          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_BACHD (Acetylornithine aminotransferase OS=Bacillus halodurans GN=argD PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.136e-16
Identity = 54/161 (33.54%), Postives = 82/161 (50.93%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVV 478
            AR  TG ++I++   ++HG   GTM AT Q   K  F  +    HH     P+  +         K V        +   A  + E IQG GG+  + P +  +V    ++ G L I DE+Q G  RTG+ F  F+ + + PDI+T+AKG+GNG P+GA++
Sbjct:  106 ARKATGKHEIVTFTQSFHGRTLGTMSATGQDKIKTGFGPMLETFHHV----PFNDIAAL------KQV-------VNEQTAAIVLEVIQGEGGVNLIDPEFAASVNHVCQEHGILLIIDEIQTGIGRTGTAF-AFQQYELTPDIITVAKGLGNGFPVGAML 248          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_BACAN (Acetylornithine aminotransferase OS=Bacillus anthracis GN=argD PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.136e-16
Identity = 55/161 (34.16%), Postives = 84/161 (52.17%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVV 478
            AR +TG + +++   ++HG   GTM AT Q+  K  F  +     H     P+  +         K ++++++      VA  + E +QG GG+I     +L  +    KK G L I DEVQ G  RTG+ F  +E  G+ P IVT AK +GNGIP+GA++
Sbjct:  107 ARKHTGKSLVVTCEQSFHGRTFGTMSATGQNKVKEGFGPLLPSFLHT----PFNDI---------KALKEVMN----EEVAAVMVEVVQGEGGVIPADLSFLKEIETLCKKFGSLFIIDEVQTGIGRTGTLF-AYEQMGIDPHIVTTAKALGNGIPVGAMI 249          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_WOLSU (Acetylornithine aminotransferase OS=Wolinella succinogenes GN=argD PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 6.707e-16
Identity = 51/152 (33.55%), Postives = 79/152 (51.97%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            II+L +++HG     + AT Q           +HH   P P       DG +YAK++  +            L E +QG GGI       +  + + +K+ G L + DEVQ G  R+G  F   +A+G+VPD++T+AKG+  G+P+GAV+TT
Sbjct:  129 IITLESSFHGRTITALKATGQEK---------MHHYFGPYP-------DGFVYAKNLDHVFKL-VDEKTCAVLLELVQGEGGIEPQDREGIKKLERFLKERGVLLMVDEVQTGIYRSGELF-ASQAYGIVPDVITVAKGLAGGVPIGAVMTT 262          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_SULTO (Acetylornithine/acetyl-lysine aminotransferase OS=Sulfolobus tokodaii GN=argD PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.707e-16
Identity = 45/158 (28.48%), Postives = 78/158 (49.37%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAV 475
            AR  TG   II+ +N++HG  AG++  T    ++              +P+  +      +   ++ +L +       A  + E IQG  G+I     ++ A+ +  +K G L + DEVQ GF RTG   W ++ +G++PD++T  K IG G P+ A+
Sbjct:  107 ARKITGRKKIIAFKNSFHGRTAGSLSVTWNKRYR--------------EPFEPLMSPVQFLTYNNIDELKNIDEQ--TAAVIVEPIQGESGVIPANEDFMKALREQTQKVGALLVVDEVQTGFGRTGK-VWAYQHYGIIPDLLTAGKAIGGGFPVSAL 247          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_XANCP (Acetylornithine aminotransferase OS=Xanthomonas campestris pv. campestris GN=argD PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.760e-16
Identity = 51/150 (34.00%), Postives = 76/150 (50.67%), Query Frame = 2
Query:   29 IISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVV 478
            I++ R ++HG    ++ ATAQ  ++              + Y  + G    +   DV  L     SG VA  + E IQG GG++  APG+L  V     +   L + DE+Q G  RTGS F  ++   V PDIVT+AK +G G P+GA++
Sbjct:  134 IVTFRGSFHGRTLASVTATAQPKYQ--------------EGYEPLPGGFRYVDFNDVPALESAMASGDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGSLFAHWQEQ-VTPDIVTLAKALGGGFPIGAML 268          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_STRCO (Acetylornithine aminotransferase OS=Streptomyces coelicolor GN=argD PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.144e-15
Identity = 54/156 (34.62%), Postives = 76/156 (48.72%), Query Frame = 2
Query:   14 TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH-GVVPDIVTMAKGIGNGIPLGAVV 478
            TG   +++ R  +HG   G +  T Q                  +P+  + G    +   D Q L    T    A  + E IQG  G++   PGYL A        G L + DEVQ G  RTG H++ ++AH GV+PD+VT+AKG+G G+PLGA V
Sbjct:  120 TGRPHMVATRGGFHGRTMGALALTGQPG--------------KQEPFLPLPGDVTHVPYGDPQALAAAVTE-ETALVIIEPIQGENGVVVPPPGYLKAARAITAATGALLVLDEVQTGVGRTG-HWFEYQAHEGVLPDVVTLAKGLGGGLPLGATV 259          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: PAT_KLEP7 (Putrescine aminotransferase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=patA PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.951e-15
Identity = 59/154 (38.31%), Postives = 79/154 (51.30%), Query Frame = 2
Query:   32 ISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTT 484
            I+   A+HG + G + ATA+S ++  F  +  G  H     P+ G   A   M ++  +      T   VA  + E IQG GG+I    GYLPAV K   + G L I DEVQ G  RTG  F   E   V PDI+ +AK +G G+ P+GA V T
Sbjct:  174 IATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHV----PF-GDINAMRTMLSECKK------TGDDVAAVILEPIQGEGGVILPPTGYLPAVRKLCDEFGALLILDEVQTGMGRTGKMF-ACEHENVQPDILCLAKALGGGVMPIGATVAT 315          
The following BLAST results are available for this feature:
BLAST of CB250317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 236
Match NameE-valueIdentityDescription
ARGD_METAC2.305e-1633.54Acetylornithine aminotransferase OS=Methanosarcina... [more]
GABT_MYCLE3.932e-1635.934-aminobutyrate aminotransferase OS=Mycobacterium ... [more]
ARGD_STRMU3.932e-1633.54Acetylornithine aminotransferase OS=Streptococcus ... [more]
ARGD_BACHD5.136e-1633.54Acetylornithine aminotransferase OS=Bacillus halod... [more]
ARGD_BACAN5.136e-1634.16Acetylornithine aminotransferase OS=Bacillus anthr... [more]
ARGD_WOLSU6.707e-1633.55Acetylornithine aminotransferase OS=Wolinella succ... [more]
ARGD_SULTO6.707e-1628.48Acetylornithine/acetyl-lysine aminotransferase OS=... [more]
ARGD_XANCP8.760e-1634.00Acetylornithine aminotransferase OS=Xanthomonas ca... [more]
ARGD_STRCO1.144e-1534.62Acetylornithine aminotransferase OS=Streptomyces c... [more]
PAT_KLEP71.951e-1538.31Putrescine aminotransferase OS=Klebsiella pneumoni... [more]

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Properties
Property NameValue
Genbank descriptionEST0102 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ143 similar to putative aminotransferase (acc# NP_187498), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250317 ID=CB250317; Name=CB250317; organism=Citrus sinensis; type=EST; length=485bp
GGCAAGATTATATACCGGATGCAATGACATAATATCACTGAGAAACGCCT
ATCATGGAAACGCAGCTGGAACTATGGGTGCCACTGCTCAGTCCAACTGG
AAATTTAACGTTGTTCAGACTGGCGTTCATCATGCCTTGAACCCCGACCC
ATACAGAGGCGTGTTTGGTGCGGATGGCGAAATGTATGCTAAAGATGTTC
AAGATCTCATTGACTTTGGAACTTCTGGGCATGTTGCTGGTTTCCTTTCT
GAATCTATTCAGGGAGTGGGTGGCATTATAGAGTTGGCCCCAGGTTACCT
GCCTGCGGTTTATAAAAGCATTAAGAAAGCGGGAGGCCTTTGTATAGCTG
ATGAGGTTCAGGCTGGATTTGCCCGAACAGGGAGCCATTTCTGGGGATTT
GAGGCCCATGGTGTTGTTCCTGACATTGTGACAATGGCAAAGGGCATTGG
AAATGGTATCCCCCTTGGTGCAGTAGTAACTACTC
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