CB250317

Overview
NameCB250317
Unique NameCB250317
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length485
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_MYCBO (Acetylornithine aminotransferase OS=Mycobacterium bovis GN=argD PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.652e-14
Identity = 47/153 (30.72%), Postives = 71/153 (46.41%), Query Frame = 2
Query:   14 TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGA 472
            TG   +++  +A+HG   G++  T Q                   P+  + G    +   DV D +      H A    E I G  G++    GYL A      + G L + DEVQ G  RTG+ F+  +  G+ PD+VT+AKG+G G+P+GA
Sbjct:  127 TGRTKLVAAHDAFHGRTMGSLALTGQP--------------AKQTPFAPLPGDVTHVGYGDV-DALAAAVDDHTAAVFLEPIMGESGVVVPPAGYLAAARDITARRGALLVLDEVQTGMGRTGA-FFAHQHDGITPDVVTLAKGLGGGLPIGA 263          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: PAT_ENT38 (Putrescine aminotransferase OS=Enterobacter sp. (strain 638) GN=patA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.158e-14
Identity = 57/154 (37.01%), Postives = 76/154 (49.35%), Query Frame = 2
Query:   32 ISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTT 484
            I+   A+HG + G + ATA+S ++  F  +  G  H     P+       G++ A          T   VA  + E IQG GG+I    GYLPAV K   +   L I DEVQ G  RTG  F   E   V PDI+ +AK +G G+ P+GA V T
Sbjct:  174 IATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHV----PF-------GDINAMRTMLTECRKTGDDVAAVILEPIQGEGGVILPPLGYLPAVRKLCDEFDALLILDEVQTGMGRTGKMF-ACEHENVQPDILCLAKALGGGVMPIGATVAT 315          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_LACPL (Acetylornithine aminotransferase OS=Lactobacillus plantarum GN=argD PE=3 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 2.158e-14
Identity = 53/159 (33.33%), Postives = 79/159 (49.69%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVV 478
            AR YTG   I++ ++++HG   G M  T   +     +Q G +  L P      +  D  +      D I    +  +A  + E +QG GG+      +L AV    +  G L I DEVQ G  RTG     +E +G+ PDI T+AKG+ NG+P+GA+V
Sbjct:  105 ARKYTGKTGILAFQHSFHGRTYGAMSMTGNPH-----IQAG-YAPLVPGITFATYNDDAAL------DKI----TPELAAVILEVVQGEGGVFAGQTAWLQAVNAKCQATGVLLIIDEVQTGIGRTGYRM-AYEGYGLDPDIYTVAKGLANGLPVGAMV 246          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_AQUAE (Acetylornithine aminotransferase OS=Aquifex aeolicus GN=argD PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.158e-14
Identity = 51/154 (33.12%), Postives = 76/154 (49.35%), Query Frame = 2
Query:   32 ISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAK-----DVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVV 478
            IS  N++HG   G++ AT Q  +         H    P          G  YAK      V  L+D  T    AG + E IQG GG+ E +  +L  + +  K+   L I DEVQ G  RTG  F+ ++   + PD++ +AKG+G G+P+GA++
Sbjct:  122 ISFENSFHGRTYGSLSATGQPKF---------HKGFEPL-------VPGFSYAKLNDIDSVYKLLDEET----AGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTG-EFYAYQHFNLKPDVIALAKGLGGGVPIGAIL 254          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: PAT_SHIFL (Putrescine aminotransferase OS=Shigella flexneri GN=patA PE=3 SV=5)

HSP 1 Score: 77.7962 bits (190), Expect = 2.818e-14
Identity = 55/154 (35.71%), Postives = 76/154 (49.35%), Query Frame = 2
Query:   32 ISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTT 484
            I+    +HG + G + ATA+S ++  F  +  G  H     P+  +     E     + +    G    VA  + E IQG GG+I   PGYL AV K   + G L I DEVQ G  RTG  F   E   V PDI+ +AK +G G+ P+GA + T
Sbjct:  174 IATSGVFHGKSLGALSATAKSTFRKPFMPLLPGFRHV----PFGNI-----EAMRTALNECKKTGDD--VAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMF-ACEHENVQPDILCLAKALGGGVMPIGATIAT 315          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: PAT_SHIF8 (Putrescine aminotransferase OS=Shigella flexneri serotype 5b (strain 8401) GN=patA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.818e-14
Identity = 55/154 (35.71%), Postives = 76/154 (49.35%), Query Frame = 2
Query:   32 ISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTT 484
            I+    +HG + G + ATA+S ++  F  +  G  H     P+  +     E     + +    G    VA  + E IQG GG+I   PGYL AV K   + G L I DEVQ G  RTG  F   E   V PDI+ +AK +G G+ P+GA + T
Sbjct:  174 IATSGVFHGKSLGALSATAKSTFRKPFMPLLPGFRHV----PFGNI-----EAMRTALNECKKTGDD--VAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMF-ACEHENVQPDILCLAKALGGGVMPIGATIAT 315          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_THET8 (Acetylornithine/acetyl-lysine aminotransferase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=argD PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.818e-14
Identity = 48/159 (30.19%), Postives = 75/159 (47.17%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVV 478
            AR +TG    ++    + G   G++  T +  ++   +          +P   +   D E   + V +          A  + E +QG GG+    P +L A  +  ++ G L I DE+Q G  RTG  F  FE  G+VPDI+T+AK +G G+PLGA V
Sbjct:  124 ARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPL-------VEPVEFIPYNDVEALKRAVDE--------ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRF-AFEHFGIVPDILTLAKALGGGVPLGAAV 266          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_OCEIH (Acetylornithine aminotransferase OS=Oceanobacillus iheyensis GN=argD PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.818e-14
Identity = 52/160 (32.50%), Postives = 78/160 (48.75%), Query Frame = 2
Query:   11 YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYA----KDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVV 478
            Y    +II+   ++HG    TM ATAQ           +H    P         +G  Y     K+    ID   +G  +  L E IQG GGI      +L  +    K+A  L + DE+Q G  RTGS F  ++ +G+ PD++T+AKG+G+G P+GA++
Sbjct:  122 YDDRTEIITFEQSFHGRTGSTMAATAQEK---------IHQGFTPL-------TEGFRYLPFNNKESLSEID---NGKTSAVLLEVIQGEGGIHTAEKDWLKQLAAICKQADILLMIDEIQTGIGRTGSLF-AYQPYGIEPDVITVAKGLGSGFPIGAML 261          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ARGD_BUCAI (Acetylornithine/succinyldiaminopimelate aminotransferase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=argD PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.818e-14
Identity = 53/156 (33.97%), Postives = 77/156 (49.36%), Query Frame = 2
Query:   23 NDIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            N IIS  N++HG    T+    QS +   F     G+ HA   D                V++LID  T   V     E IQG GG+I     ++ A+ +  K+   L I DE+Q G  RTG  F+ +E + + PDI+T+AK +G G P+ A++TT
Sbjct:  132 NKIISFYNSFHGRTFFTVSVGGQSKYSNNFGPKPAGIVHASFND-------------INSVKNLIDHDTCAVVV----ELIQGEGGVIPANLTFVQALKELCKQYNVLLIFDEIQTGIGRTGKLFY-YEYYAITPDILTIAKSLGGGFPISAMLTT 269          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: ECTB_BACHD (Diaminobutyrate--2-oxoglutarate transaminase OS=Bacillus halodurans GN=ectB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.680e-14
Identity = 59/165 (35.76%), Postives = 80/165 (48.48%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF-------GTSGHV--AGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGN-GIPL 466
            AR  TG  DIIS  N +HG   G++  T  S   F     G+       P   V     + +  +  D +D+       G SG    A  + E++QG GGI      +L  V K  K+ G L I D+VQAG  RTG+ F+ FE  G+ PDIV ++K IG  G+PL
Sbjct:  125 ARKVTGRTDIISFTNGFHGMTIGSLSVTGNS---FKRKGAGI-------PLTNVVTMPYDNFVSESLDTLDYLERFLEDGGSGVEIPAAMILETVQGEGGINAARTEWLQRVEKICKRWGILLIIDDVQAGVGRTGT-FFSFEDAGITPDIVCLSKSIGGFGLPL 278          
The following BLAST results are available for this feature:
BLAST of CB250317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 236
Match NameE-valueIdentityDescription
ARGD_MYCBO1.652e-1430.72Acetylornithine aminotransferase OS=Mycobacterium ... [more]
PAT_ENT382.158e-1437.01Putrescine aminotransferase OS=Enterobacter sp. (s... [more]
ARGD_LACPL2.158e-1433.33Acetylornithine aminotransferase OS=Lactobacillus ... [more]
ARGD_AQUAE2.158e-1433.12Acetylornithine aminotransferase OS=Aquifex aeolic... [more]
PAT_SHIFL2.818e-1435.71Putrescine aminotransferase OS=Shigella flexneri G... [more]
PAT_SHIF82.818e-1435.71Putrescine aminotransferase OS=Shigella flexneri s... [more]
ARGD_THET82.818e-1430.19Acetylornithine/acetyl-lysine aminotransferase OS=... [more]
ARGD_OCEIH2.818e-1432.50Acetylornithine aminotransferase OS=Oceanobacillus... [more]
ARGD_BUCAI2.818e-1433.97Acetylornithine/succinyldiaminopimelate aminotrans... [more]
ECTB_BACHD3.680e-1435.76Diaminobutyrate--2-oxoglutarate transaminase OS=Ba... [more]

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Properties
Property NameValue
Genbank descriptionEST0102 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ143 similar to putative aminotransferase (acc# NP_187498), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250317 ID=CB250317; Name=CB250317; organism=Citrus sinensis; type=EST; length=485bp
GGCAAGATTATATACCGGATGCAATGACATAATATCACTGAGAAACGCCT
ATCATGGAAACGCAGCTGGAACTATGGGTGCCACTGCTCAGTCCAACTGG
AAATTTAACGTTGTTCAGACTGGCGTTCATCATGCCTTGAACCCCGACCC
ATACAGAGGCGTGTTTGGTGCGGATGGCGAAATGTATGCTAAAGATGTTC
AAGATCTCATTGACTTTGGAACTTCTGGGCATGTTGCTGGTTTCCTTTCT
GAATCTATTCAGGGAGTGGGTGGCATTATAGAGTTGGCCCCAGGTTACCT
GCCTGCGGTTTATAAAAGCATTAAGAAAGCGGGAGGCCTTTGTATAGCTG
ATGAGGTTCAGGCTGGATTTGCCCGAACAGGGAGCCATTTCTGGGGATTT
GAGGCCCATGGTGTTGTTCCTGACATTGTGACAATGGCAAAGGGCATTGG
AAATGGTATCCCCCTTGGTGCAGTAGTAACTACTC
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