CB250319

Overview
NameCB250319
Unique NameCB250319
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig115 contig Csv1_Contig115:1..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR1_PECCC (Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum GN=peh PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.047e-16
Identity = 65/176 (36.93%), Postives = 95/176 (53.98%), Query Frame = 2
Query:   38 NTDGIHVQASSGVTILDSKIGTGDDCVSV----GPGAT-NLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGFARNILFQHALMNNVDNPIIIDQNY-CPDNNNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKL 547
            NTDGI   +S  +TI  S I TGDD V++    G   T N+ I +   G GHG+SIGS     +  GV NVTV  +  TGT NG+RIKS  + + G    + + + +M NV  PI+ID  Y   + +N P        SD+ ++DI  TS T+  V L+  +      +++++VKL
Sbjct:  226 NTDGIDPMSSKNITIAHSNISTGDDNVAIKAYKGRSETRNISILHNEFGTGHGMSIGS-----ETMGVYNVTVDDLIMTGTTNGLRIKS-DKSAAGVVNGVRYSNVVMKNVAKPIVIDTVYEKKEGSNVPDW------SDITFKDI--TSQTKGVVVLNGENAKKPIEVTMKNVKL 387          
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR_PENJA (Polygalacturonase OS=Penicillium janthinellum PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16
Identity = 64/190 (33.68%), Postives = 101/190 (53.16%), Query Frame = 2
Query:   38 NTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGFARNILFQHALMNNV-DNPIIIDQNYCPDNNNCPG-QASGVKISDVIYQDIHG---TSATEVGVKL--DCSSKNPCTGISLEDVKLIYK--NQPAEASC 580
            NTDG  +  S+GVTI ++ +   DDC+++  G  N++     C  GHG+SIGS+G       V+NVT+T  T T + NGVRIK+    + G   ++ F    ++ + D  I+I+Q+Y  +N +  G   SGV I+D+  + I G   + A EV +    D  S    +G+ +   +   K  N P+ ASC
Sbjct:  187 NTDGFDISESTGVTIRNAVVKNQDDCIAINSG-QNIYFTGGTCSGGHGLSIGSVGGRDDNT-VKNVTITDSTVTDSANGVRIKT-VYDATGSVSDVTFSDITVSGITDYGIVIEQDY--ENGSPTGTPTSGVPITDLTVKGITGSVESDAVEVYILCGDDACSDWTWSGVDITSGQTSSKCENVPSGASC 371          
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR2_ASPTU (Polygalacturonase-2 OS=Aspergillus tubingensis GN=pgaII PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.198e-16
Identity = 61/190 (32.11%), Postives = 96/190 (50.53%), Query Frame = 2
Query:   38 NTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGFARNILFQHALMNNV-DNPIIIDQNYCPDNNNCPGQASGVKISDVIYQDIHGT-SATEVGVKLDCSSKNPCTGISLEDVKL-------IYKNQPAEASC 580
            NTD   V  S GV I+   +   DDC+++  G  N+W  +  C  GHG+SIGS+G       V+NVT+   T + ++N VRIK+    + G    I + + +M+ + D  ++I Q+Y  D        +GV I+DV  + + GT  +    + L C S   C+  + +DVK+         KN P+ ASC
Sbjct:  178 NTDAFDVGNSVGVNIIKPWVHNQDDCLAINSGE-NIWFTSGTCIGGHGLSIGSVGGRSNNV-VKNVTIEHSTVSNSENAVRIKTVS-GATGSVSEITYSNIVMSGISDYGVVIQQDY-EDGKPTGKPTNGVTITDVKLESVTGTVDSKATDIYLLCGS-GSCSDWTWDDVKVTGGKKSTACKNYPSVASC 362          
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR2_PECCC (Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum GN=pehA PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.158e-15
Identity = 63/176 (35.80%), Postives = 94/176 (53.41%), Query Frame = 2
Query:   38 NTDGIHVQASSGVTILDSKIGTGDDCVSV----GPGAT-NLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGFARNILFQHALMNNVDNPIIIDQNY-CPDNNNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKL 547
            NTDGI   +S  +TI  S I TGDD V++    G   T N+ I +   G GHG+SIGS     +  GV NVTV  +   GT NG+RIKS  + + G    + + + +M NV  PI+ID  Y   + +N P        SD+ ++D+  TS T+  V L+  +      +++++VKL
Sbjct:  226 NTDGIDPMSSKNITIAYSNIATGDDNVAIKAYKGRAETRNISILHNDFGTGHGMSIGS-----ETMGVYNVTVDDLKMNGTTNGLRIKS-DKSAAGVVNGVRYSNVVMKNVAKPIVIDTVYEKKEGSNVPDW------SDITFKDV--TSETKGVVVLNGENAKKPIEVTMKNVKL 387          
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR2_ASPNG (Endopolygalacturonase-2 OS=Aspergillus niger GN=pgaB PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.512e-15
Identity = 67/202 (33.17%), Postives = 101/202 (50.00%), Query Frame = 2
Query:   17 SAAGDSP---NTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGFARNILFQHALMNNV-DNPIIIDQNYCPDNNNCPGQASGVKISDVIYQDIHG---TSATEVGVKLDCSSKNPCTGISLEDVKL-------IYKNQPAEASC 580
            +A GD+    NTD   V  S GV I+   +   DDC++V  G  N+W     C  GHG+SIGS+G       V+NVT+   T + ++N VRIK+    + G    I + + +M+ + D  ++I Q+Y  D        +GV I DV  + + G   + ATE  + L C S   C+  + +DVK+         KN P+ ASC
Sbjct:  168 NADGDTQGGHNTDAFDVGNSVGVNIIKPWVHNQDDCLAVNSGE-NIWFTGGTCIGGHGLSIGSVGDRSNNV-VKNVTIEHSTVSNSENAVRIKTIS-GATGSVSEITYSNIVMSGISDYGVVIQQDY-EDGKPTGKPTNGVTIQDVKLESVTGSVDSGATE--IYLLCGS-GSCSDWTWDDVKVTGGKKSTACKNFPSVASC 362          
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR_PENGR (Polygalacturonase OS=Penicillium griseoroseum GN=PGG1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.975e-15
Identity = 71/207 (34.30%), Postives = 105/207 (50.72%), Query Frame = 2
Query:    5 GVKVSAA-GDSP---NTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKS-WGRPSNGFARNILFQHALMNNVDN-PIIIDQNYCPDNNNCPG-QASGVKISDVIYQDIHGTSATE-VGVKLDCSSKNPCTGISLEDVKLI-------YKNQPAEASC 580
            G+ V  A GDS    NTD   V +S+GV I    +   DDC++V  G TN+      C  GHGISIGS+G       V  VTV S T   + NGVRIK+ +G  + G  + + ++   ++ +    I+I+Q+Y  +N +  G   SGV I+D+   ++HGT A+  V   + C+S   C+  S   V +         K  P+ ASC
Sbjct:  177 GITVDTADGDSNGGHNTDAFDVGSSNGVYITSPIVHNQDDCLAVNSG-TNVHFTGAQCTGGHGISIGSVGGRSDNT-VDGVTVESCTIKDSDNGVRIKTVYG--ATGTVQGVTYKDITLSGIAKYGIVIEQDY--ENGSPTGTPTSGVPITDLTLDNVHGTVASSGVDTYILCAS-GACSDWSWSGVSITGGQTSKKCKGIPSGASC 376          
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR4_ASPNG (Polygalacturonase-4 OS=Aspergillus niger GN=pgaE PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.975e-15
Identity = 58/195 (29.74%), Postives = 99/195 (50.77%), Query Frame = 2
Query:   26 GDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKS-WGRPSNGFARNILFQHALMNNV-DNPIIIDQNYCPDNNNCPGQASGVKISDVIYQDIHGT-SATEVGVKLDCSSKNPCTGISLEDVKLI-------YKNQPAEASC 580
            G++ NTDG  +  S+ +TI  + +   DDCV+V  G  N++     C  GHG+SIGS+G       V+NVT        +QNGVRIK+ +G    G    + ++   ++++ D  I+++QNY  D +  P    G+ I D +  ++ G+  ++   + + C S + CT  +  DV +         +N P + SC
Sbjct:  192 GEAANTDGFDIGDSTYITITGANVYNQDDCVAVNSG-ENIYFSGGVCSGGHGLSIGSVGGRSDNT-VKNVTFYDSDIKSSQNGVRIKTIYG--DTGSVSEVTYKEITLSDITDYGIVVEQNY-DDTSESP--TDGITIEDFVLDNVQGSVESSGTNIYIVCGS-DSCTDWTWTDVDVTGGKTSSDCENVPDDISC 378          
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR_PENDI (Polygalacturonase OS=Penicillium digitatum GN=PG1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.505e-15
Identity = 66/190 (34.74%), Postives = 105/190 (55.26%), Query Frame = 2
Query:   38 NTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGFARNILFQHALMNNVDN-PIIIDQNYCPDNNNCPGQ-ASGVKISDVIYQDIHGT---SATEVGVKL-DCSSKN-PCTGISLEDVKLIYK--NQPAEASC 580
            NTD   V +S+ +TI ++ I   DDC+++  G +N+      C  GHGISIGS+G       V++VT++  T   + NGVR+K+  + + G    + F +  ++N+    I+I+Q+Y  +N +  G+  +GV IS++  +++ GT   SATEV +   + S KN    G SL   K   K  N PA ASC
Sbjct:  183 NTDAFDVGSSTFITISNANIKNQDDCLAINSG-SNIKFVGGTCSGGHGISIGSVGLRDNNI-VKDVTISDSTVINSDNGVRVKTIYQ-ATGAVSGVTFSNIKLSNIAKYGIVIEQDY--ENGSPTGKPTNGVPISELTIENVTGTLKSSATEVYILCGNGSCKNWKWAGNSLSGGKKSGKCGNVPAGASC 367          
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR1_ASPAC (Polygalacturonase 1 OS=Aspergillus aculeatus GN=pga1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.802e-15
Identity = 56/191 (29.32%), Postives = 93/191 (48.69%), Query Frame = 2
Query:   38 NTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGFARNILFQHALMNNVDN-PIIIDQNYCPDNNNCPGQASGVKISDVIYQDIHGTSATE-VGVKLDCSSKNPCTGISLEDVKLIYKNQPAEASCANADGSAS 604
            NTD   +  S+ VTI  + +   DDCV+V  G  N++     C  GHG+SIGS+G       V+NVT    T   + NGVRIK+    + G   ++ ++   + ++    I++ QNY  D ++ P   +GV I+D +  ++HG+  +    + + C S   C+  +  DV +        + C N    AS
Sbjct:  196 NTDAFDIGTSTYVTISGATVYNQDDCVAVNSG-ENIYFSGGYCSGGHGLSIGSVGGRSDNT-VKNVTFVDSTIINSDNGVRIKT-NIDTTGSVSDVTYKDITLTSIAKYGIVVQQNY-GDTSSTP--TTGVPITDFVLDNVHGSVVSSGTNILISCGS-GSCSDWTWTDVSV--SGGKTSSKCTNVPSGAS 377          
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR_GIBFU (Polygalacturonase OS=Gibberella fujikuroi GN=PGA PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.280e-14
Identity = 57/182 (31.32%), Postives = 89/182 (48.90%), Query Frame = 2
Query:   23 AGDSPN-----------TDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGFARNILFQHALMNNVDN-PIIIDQNYCPDNNNCPGQ-ASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGIS 529
            AGD PN           TDG  + +S  VT+ ++ +   DDCV+V  G TN+ + N+ C  GHG+SIGS+G +     V  V   S     +QNG RIKS    + G   N+ +Q+  + N+    + + Q+Y   N    G+  +GVKIS++ +  + GT A+             C+G +
Sbjct:  173 AGDKPNAKSGSLPAAHNTDGFDISSSDHVTLDNNHVYNQDDCVAVTSG-TNIVVSNMYCSGGHGLSIGSVGGKSDNV-VDGVQFLSSQVVNSQNGCRIKS-NSGATGTINNVTYQNIALTNISTYGVDVQQDYL--NGGPTGKPTNGVKISNIKFIKVTGTVASSAQDWFILCGDGSCSGFT 349          
The following BLAST results are available for this feature:
BLAST of CB250319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
PGLR1_PECCC1.047e-1636.93Endo-polygalacturonase OS=Pectobacterium carotovor... [more]
PGLR_PENJA1.368e-1633.68Polygalacturonase OS=Penicillium janthinellum PE=3... [more]
PGLR2_ASPTU5.198e-1632.11Polygalacturonase-2 OS=Aspergillus tubingensis GN=... [more]
PGLR2_PECCC1.158e-1535.80Endo-polygalacturonase OS=Pectobacterium carotovor... [more]
PGLR2_ASPNG1.512e-1533.17Endopolygalacturonase-2 OS=Aspergillus niger GN=pg... [more]
PGLR_PENGR1.975e-1534.30Polygalacturonase OS=Penicillium griseoroseum GN=P... [more]
PGLR4_ASPNG1.975e-1529.74Polygalacturonase-4 OS=Aspergillus niger GN=pgaE P... [more]
PGLR_PENDI7.505e-1534.74Polygalacturonase OS=Penicillium digitatum GN=PG1 ... [more]
PGLR1_ASPAC9.802e-1529.32Polygalacturonase 1 OS=Aspergillus aculeatus GN=pg... [more]
PGLR_GIBFU1.280e-1431.32Polygalacturonase OS=Gibberella fujikuroi GN=PGA P... [more]

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Properties
Property NameValue
Genbank descriptionEST0106 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ154 similar to polygalacturonase (acc# AAC64184), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250319 ID=CB250319; Name=CB250319; organism=Citrus sinensis; type=EST; length=708bp
ACAGGGGGTCAAAGTTTCGGCCGCCGGTGACAGCCCAAACACCGATGGCA
TTCATGTTCAAGCATCAAGTGGTGTCACAATTTTGGACAGCAAAATTGGG
ACTGGTGATGATTGTGTATCAGTTGGACCTGGCGCCACCAACTTATGGAT
TGAAAATGTTGCTTGTGGCCCAGGCCATGGGATCAGCATTGGCAGCTTGG
GCAAAGAGCAACAAGAGGCTGGAGTGCAAAATGTGACAGTAACATCTGTG
ACATTTACAGGCACTCAAAATGGAGTGAGGATTAAGTCCTGGGGGAGACC
AAGCAATGGATTTGCCAGGAACATTCTTTTCCAACACGCTCTTATGAACA
ATGTCGATAATCCAATCATAATTGATCAAAATTACTGCCCTGACAACAAC
AATTGCCCTGGACAGGCTTCAGGGGTTAAAATCAGTGATGTGATATATCA
AGACATTCATGGAACTTCGGCAACGGAAGTTGGAGTAAAGCTCGATTGCA
GTTCGAAGAATCCATGCACTGGAATTAGCTTGGAGGATGTGAAGCTCATT
TACAAGAATCAACCAGCTGAAGCTTCCTGCGCCAACGCTGATGGATCGGC
CTCTGGATTTATTCTGCCAAATAGTTGCTTGAAGACTTGAAGTTATGAAA
AGTATTTGAGTTGGAAAAAAAAGGCATAGGAAGCCGATCATGATTATATA
GTTAGTAG
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