CB250319

Overview
NameCB250319
Unique NameCB250319
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig115 contig Csv1_Contig115:1..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR_PENEN (Polygalacturonase OS=Penicillium expansum GN=PEPG1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.672e-14
Identity = 50/165 (30.30%), Postives = 85/165 (51.52%), Query Frame = 2
Query:   38 NTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGFARNILFQHALMNNVDNP-IIIDQNYCPDNNNCPGQ-ASGVKISDVIYQDIHGTSATE-VGVKLDCSSKNPCTG 523
            NTDG  +  S  +TI  + +   DDC+++  G TN+      C  GHG+SIGS+G       V+ V ++S     +QNGVR+K+    + G  + + FQ   ++ + +  I I Q Y   N+   G   +GV I+ +   ++HGT  ++   + ++C S   C+G
Sbjct:  195 NTDGFDIGDSDSITITGATVYNQDDCLAINSG-TNIVFSGGYCSGGHGLSIGSVGGRSNNV-VETVHISSTQVVNSQNGVRVKAVS-GATGTIKGVTFQDITLSGITSQGITIRQEY--TNSGYTGSPTTGVPITGLTLNNVHGTVTSKGTDITIECGSSASCSG 354          
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR1_ASPNG (Polygalacturonase-1 OS=Aspergillus niger GN=pgaA PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.672e-14
Identity = 61/189 (32.28%), Postives = 94/189 (49.74%), Query Frame = 2
Query:   38 NTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGFARNILFQHALMNNVDNPIIIDQNYCPDNNNCPGQAS-GVKISDVIYQDIHGT---SATEVGVKLDCSSKNPCT--GISLEDVKLIYK--NQPAEASC 580
            NTDG  +  S+GV I  + +   DDC+++  G  ++      C  GHG+SIGS+G       V+NVT++  T + + NGVRIK+  + +   +        L    D  I+I+Q+Y  +N +  G  S G+ I+DV    + GT    AT+V +     S +  T  G+ L   K   K  N P+ ASC
Sbjct:  184 NTDGFDISESTGVYISGATVKNQDDCIAINSG-ESISFTGGTCSGGHGLSIGSVGGRDDNT-VKNVTISDSTVSNSANGVRIKTIYKETGDVSEITYSNIQLSGITDYGIVIEQDY--ENGSPTGTPSTGIPITDVTVDGVTGTLEDDATQVYILCGDGSCSDWTWSGVDLSGGKTSDKCENVPSGASC 368          
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLRB_ASPFL (Polygalacturonase B OS=Aspergillus flavus GN=pecB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.865e-14
Identity = 58/190 (30.53%), Postives = 92/190 (48.42%), Query Frame = 2
Query:   38 NTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGFARNILFQHALMNNV-DNPIIIDQNYCPDNNNCPGQ-ASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCT-----GISLEDVKLIYK--NQPAEASC 580
            NTD   V  S+GV I  + +   DDC+++  G  N+      C  GHGISIGS+G       V+NV V   T   + NG+RIK+    + G    + +++  + N+  N I+I+ +Y   N    G+  +GV I+D+    + G+ A++         K  C+     G+S+   K   K  N P+ ASC
Sbjct:  182 NTDAFDVSESNGVYITGANVKNQDDCLAINSG-ENIEFTGATCSGGHGISIGSIGNRDTNT-VKNVKVADSTVVDSDNGIRIKTIS-GATGSVSGVTYENITLKNIKKNGIVIELDY--KNGGPTGKPTTGVPITDLTVNGVTGSVASKATPVYILCGKGSCSDWTWKGVSISGGKKSDKCQNIPSGASC 366          
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLRA_ASPFL (Polygalacturonase A OS=Aspergillus flavus GN=pecA PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.865e-14
Identity = 57/197 (28.93%), Postives = 102/197 (51.78%), Query Frame = 2
Query:   17 SAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGFARNILFQHALMNNVDN-PIIIDQNYCPDNNNCPG-QASGVKISDVIYQDIHGT---SATEVGVKLDCSSKNPCT--GISLEDVKLIYK--NQPAEASC 580
            +   +  NTD   V +S+ + I  + +   DDC+++  G+ ++   N  C  GHG+SIGS+G       V++VT+++     +QNGVRIK+    + G   N+ F+   ++ +    +I++Q+Y  +N +  G   +G+K+SD+ +  + GT    AT++ +     S    T  G+S+   K   K  N P  ASC
Sbjct:  172 AGTAEGHNTDAFDVGSSTYINIDGATVYNQDDCLAINSGS-HITFTNGYCDGGHGLSIGSVGGRSDNT-VEDVTISNSKVVNSQNGVRIKT-VYDATGTVSNVKFEDITLSGITKYGLIVEQDY--ENGSPTGTPTNGIKVSDITFDKVTGTVESDATDIYILCGSGSCTDWTWSGVSITGGKTSSKCENVPTGASC 363          
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR3_ASPNG (Polygalacturonase-3 OS=Aspergillus niger GN=pgaC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.415e-13
Identity = 48/143 (33.57%), Postives = 75/143 (52.45%), Query Frame = 2
Query:   38 NTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGFARNILFQHALMNNVDNPIIIDQNYCPDNNNCPGQASGVKISDVIYQDIHGT 466
            NTDG  +  S+ +TI  ++I   DDCV++  G  N++     C  GHG+SIGS+G       V+NVT   V    +Q  +RIK+    +   +     + A  +  D  I+I+QNY  D +  P   +GV I+D + ++I GT
Sbjct:  198 NTDGFDIGESTYITITGAEIYNQDDCVAINSG-ENIYFSASVCSGGHGLSIGSVGGRDDNT-VKNVTFYDVNVLKSQQAIRIKTIYGDTGSVSEVTYHEIAFSDATDYGIVIEQNY-DDTSKTP--TTGVPITDFVLENIVGT 335          
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR1_COLLN (Endopolygalacturonase 1 OS=Colletotrichum lindemuthianum GN=PG1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 57/169 (33.73%), Postives = 94/169 (55.62%), Query Frame = 2
Query:   17 SAAGDSP---NTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGFARNILFQHALMNNVDN-PIIIDQNYCPDNNNCPGQ-ASGVKISDVIYQDIHGT-SATEVGVKLDCSS 505
            ++AGDS    NTD   V +S+GV I  + +   DDC++V  G TN+      C  GHG+SIGS+G  +    V++V++T+     + NGVRIK+    + G   +I +    ++N+    I+I+Q+Y  +N +  G+  SGV IS +    I G+ S++   V + C+S
Sbjct:  169 NSAGDSAGGHNTDAFDVGSSTGVYISGADVKNQDDCLAVNSG-TNITFTGGTCSGGHGLSIGSVGGRKDNV-VKSVSITNSKIINSDNGVRIKTVA-GATGPVSDITYSGITLSNIAKYGIVIEQDY--ENGSPTGKPTSGVPISGLTLSKISGSVSSSATPVYILCAS 332          
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR_ASPOR (Polygalacturonase OS=Aspergillus oryzae GN=AO090023000161 PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 56/197 (28.43%), Postives = 101/197 (51.27%), Query Frame = 2
Query:   17 SAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGFARNILFQHALMNNVDN-PIIIDQNYCPDNNNCPG-QASGVKISDVIYQDIHGT---SATEVGVKLDCSSKNPCT--GISLEDVKLIYK--NQPAEASC 580
            +   +  NTD   V +S+ + I  + +   DDC+++  G+ ++   N  C  GHG+SIGS+G       V++VT+++     +QNGVRIK+    + G   N+ F+   ++ +    +I++Q+Y  +N +  G   +G+K+SD+ +  + GT    AT++ +     S    T  G+S+   K   K  N    ASC
Sbjct:  172 AGTAEGHNTDAFDVGSSTYINIDGATVYNQDDCLAINSGS-HITFTNGYCDGGHGLSIGSVGGRSDNT-VEDVTISNSKVVNSQNGVRIKT-VYDATGTVSNVKFEDITLSGITKYGLIVEQDY--ENGSPTGTPTNGIKVSDITFDKVTGTVESDATDIYILCGSGSCTDWTWSGVSITGGKTSSKCENVSTGASC 363          
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR2_PENOL (Polygalacturonase 2 OS=Penicillium olsonii GN=PG2 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 58/191 (30.37%), Postives = 98/191 (51.31%), Query Frame = 2
Query:   38 NTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGFARNILFQHALMNNVDN-PIIIDQNYCPDNNNCPG-QASGVKISDVIYQDIHGTSATE-VGVKLDCSSKNPCT-----GISLEDVKL--IYKNQPAEASC 580
            NTD   V +S+G+TI  + +   DDC++V  G T++      C  GHG+SIGS+G       V NV + +     + NGVRIK+    + G  +N+ ++   ++ +    I+I+Q+Y  +N +  G    GV I+D+    + GT A+    V + C ++  C+     G+S+   K     +N P+ ASC
Sbjct:  196 NTDAFDVGSSTGITITGATVYNQDDCLAVNSG-TDITFTGGLCSGGHGLSIGSVGGRSNN-DVANVIIENSQIQDSTNGVRIKT-VYEATGSVKNVTYKDITLSGITKYGIVIEQDY--ENGSPTGTPTDGVPITDLTLDGVKGTVASSGTNVYILC-AEGACSDWTWDGVSVSGGKTSSACENVPSSASC 380          
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR1_PENOL (Polygalacturonase 1 OS=Penicillium olsonii GN=PG1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13
Identity = 57/190 (30.00%), Postives = 99/190 (52.11%), Query Frame = 2
Query:   38 NTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGFARNILFQHALMNNVDN-PIIIDQNYCPDNNNCPGQ-ASGVKISDVIYQDIHG---TSATEVGVKLDCSSKNPCT----GISLEDVKLIYKNQPAEASC 580
            NTD   V  S+ +TI ++ I   DDC+++  G  N+      C  GHG+SIGS+G       V+NVT++  T + + NG+RIK+  + + G   ++ F +  ++N+    I+I+Q+Y  +N +  G+  +GV I+ +  + + G   +S T+V +     S +  T     +S        KN P+ ASC
Sbjct:  186 NTDAFDVGESTYITISNANIKNQDDCLAINSG-ENIIFTGGTCSGGHGLSIGSVGGRDDNT-VKNVTISDSTVSNSDNGIRIKTIYK-AKGEVADVTFSNIELSNIAKYGIVIEQDY--ENGSPTGKPTTGVPITGLTVEKVTGSVKSSGTDVYILCGSGSCSDWTWSGNKVSGGKTSSKCKNVPSGASC 370          
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR_ASPPA (Polygalacturonase OS=Aspergillus parasiticus GN=pecA PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 54/198 (27.27%), Postives = 103/198 (52.02%), Query Frame = 2
Query:   17 SAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKS-WGRPSNGFARNILFQHALMNNVDN-PIIIDQNYCPDNNNCPG-QASGVKISDVIYQDIHGT---SATEVGVKLDCSSKNPCT--GISLEDVKLIYK--NQPAEASC 580
            +   +  NTD   + +S+ + I  + +   DDC+++  G+ ++   N  C  GHG+SIGS+G       V++VT+++     +QNGVRIK+ +G  + G   N+ F+   ++ +    ++++Q+Y  +N +  G   +G+ +S + ++ + GT    AT++ +     S    T  G+S+   K   K  N P  ASC
Sbjct:  172 AGTAEGHNTDAFDIGSSTYINIDGATVYNQDDCLAINSGS-HITFTNGYCDGGHGLSIGSVGGRSDNT-VEDVTISNSKVVNSQNGVRIKTVYG--ATGTVSNVKFEDITLSGITKYGLVVEQDY--ENGSPTGTPTNGITVSGITFEKVTGTVESDATDIYILCGSGSCTDWTWSGVSITGGKTSSKCENVPTGASC 363          
The following BLAST results are available for this feature:
BLAST of CB250319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
PGLR_PENEN1.672e-1430.30Polygalacturonase OS=Penicillium expansum GN=PEPG1... [more]
PGLR1_ASPNG1.672e-1432.28Polygalacturonase-1 OS=Aspergillus niger GN=pgaA P... [more]
PGLRB_ASPFL4.865e-1430.53Polygalacturonase B OS=Aspergillus flavus GN=pecB ... [more]
PGLRA_ASPFL4.865e-1428.93Polygalacturonase A OS=Aspergillus flavus GN=pecA ... [more]
PGLR3_ASPNG1.415e-1333.57Polygalacturonase-3 OS=Aspergillus niger GN=pgaC P... [more]
PGLR1_COLLN2.414e-1333.73Endopolygalacturonase 1 OS=Colletotrichum lindemut... [more]
PGLR_ASPOR4.118e-1328.43Polygalacturonase OS=Aspergillus oryzae GN=AO09002... [more]
PGLR2_PENOL7.025e-1330.37Polygalacturonase 2 OS=Penicillium olsonii GN=PG2 ... [more]
PGLR1_PENOL9.175e-1330.00Polygalacturonase 1 OS=Penicillium olsonii GN=PG1 ... [more]
PGLR_ASPPA1.198e-1227.27Polygalacturonase OS=Aspergillus parasiticus GN=pe... [more]

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Properties
Property NameValue
Genbank descriptionEST0106 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ154 similar to polygalacturonase (acc# AAC64184), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250319 ID=CB250319; Name=CB250319; organism=Citrus sinensis; type=EST; length=708bp
ACAGGGGGTCAAAGTTTCGGCCGCCGGTGACAGCCCAAACACCGATGGCA
TTCATGTTCAAGCATCAAGTGGTGTCACAATTTTGGACAGCAAAATTGGG
ACTGGTGATGATTGTGTATCAGTTGGACCTGGCGCCACCAACTTATGGAT
TGAAAATGTTGCTTGTGGCCCAGGCCATGGGATCAGCATTGGCAGCTTGG
GCAAAGAGCAACAAGAGGCTGGAGTGCAAAATGTGACAGTAACATCTGTG
ACATTTACAGGCACTCAAAATGGAGTGAGGATTAAGTCCTGGGGGAGACC
AAGCAATGGATTTGCCAGGAACATTCTTTTCCAACACGCTCTTATGAACA
ATGTCGATAATCCAATCATAATTGATCAAAATTACTGCCCTGACAACAAC
AATTGCCCTGGACAGGCTTCAGGGGTTAAAATCAGTGATGTGATATATCA
AGACATTCATGGAACTTCGGCAACGGAAGTTGGAGTAAAGCTCGATTGCA
GTTCGAAGAATCCATGCACTGGAATTAGCTTGGAGGATGTGAAGCTCATT
TACAAGAATCAACCAGCTGAAGCTTCCTGCGCCAACGCTGATGGATCGGC
CTCTGGATTTATTCTGCCAAATAGTTGCTTGAAGACTTGAAGTTATGAAA
AGTATTTGAGTTGGAAAAAAAAGGCATAGGAAGCCGATCATGATTATATA
GTTAGTAG
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