CB250319

Overview
NameCB250319
Unique NameCB250319
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig115 contig Csv1_Contig115:1..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR1_SCLSC (Endo-polygalacturonase OS=Sclerotinia sclerotiorum GN=PG1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 53/164 (32.32%), Postives = 89/164 (54.27%), Query Frame = 2
Query:   17 SAAGDS--PNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGFARNILFQHALMNNVDN-PIIIDQNYCPDNNNCPGQ-ASGVKISDVIYQDIHGT---SATEVGV 487
            ++AG+S   NTD   V +S+ +TI  + +   DDC+++  G T +      C  GHG+SIGS+G       V +V + S T   + NGVRIK+    + G    + ++   ++ + +  ++I+Q+Y  +N +  G+  SGV I+ V   ++HGT   SAT V V
Sbjct:  190 NSAGNSLGHNTDAFDVGSSTDITISGANVQNQDDCLAINSG-TGITFTGGTCSGGHGLSIGSVGGRSDNV-VSDVIIESSTVKNSANGVRIKT-VLGATGSVSGVTYKDITLSGITSYGVVIEQDY--ENGSPTGKPTSGVPITGVTLSNVHGTVSSSATNVYV 348          
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR_VITVI (Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 58/222 (26.13%), Postives = 101/222 (45.50%), Query Frame = 2
Query:    2 QGVKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPG-----------ATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGFARNILFQHALMNNVDNPIIIDQNYCPDNNNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDV--KLIYKNQPAEASCANADGSASGFILPNSC 628
            QG+ + A   SPNTDGI+  + +   I D  I +GDDCV+V  G              L I  + C   +   I +LG E    G+Q+V    +    +++G+RIK+ G    G+ ++I  +   M  +     +  NY    +N     +   I  + Y+D+   + + +  +L+    +P TGI + +V   L  K +    +C + +G +SG + P  C
Sbjct:  236 QGITILAPVRSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSAVI-ALGSE-MSGGIQDVRAEDIVAINSESGIRIKT-GIGRGGYVKDIYVRGMTMKTMKWAFWMTGNYGSHADNHYDPKAFPVIQGINYRDMVAENVS-MAARLEGIPSDPFTGICISNVTIHLAAKAKKVPWTCTDVEGISSG-VTPTPC 452          
The following BLAST results are available for this feature:
BLAST of CB250319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
PGLR1_SCLSC1.565e-1232.32Endo-polygalacturonase OS=Sclerotinia sclerotiorum... [more]
PGLR_VITVI6.575e-1126.13Probable polygalacturonase OS=Vitis vinifera GN=GS... [more]

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Properties
Property NameValue
Genbank descriptionEST0106 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ154 similar to polygalacturonase (acc# AAC64184), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250319 ID=CB250319; Name=CB250319; organism=Citrus sinensis; type=EST; length=708bp
ACAGGGGGTCAAAGTTTCGGCCGCCGGTGACAGCCCAAACACCGATGGCA
TTCATGTTCAAGCATCAAGTGGTGTCACAATTTTGGACAGCAAAATTGGG
ACTGGTGATGATTGTGTATCAGTTGGACCTGGCGCCACCAACTTATGGAT
TGAAAATGTTGCTTGTGGCCCAGGCCATGGGATCAGCATTGGCAGCTTGG
GCAAAGAGCAACAAGAGGCTGGAGTGCAAAATGTGACAGTAACATCTGTG
ACATTTACAGGCACTCAAAATGGAGTGAGGATTAAGTCCTGGGGGAGACC
AAGCAATGGATTTGCCAGGAACATTCTTTTCCAACACGCTCTTATGAACA
ATGTCGATAATCCAATCATAATTGATCAAAATTACTGCCCTGACAACAAC
AATTGCCCTGGACAGGCTTCAGGGGTTAAAATCAGTGATGTGATATATCA
AGACATTCATGGAACTTCGGCAACGGAAGTTGGAGTAAAGCTCGATTGCA
GTTCGAAGAATCCATGCACTGGAATTAGCTTGGAGGATGTGAAGCTCATT
TACAAGAATCAACCAGCTGAAGCTTCCTGCGCCAACGCTGATGGATCGGC
CTCTGGATTTATTCTGCCAAATAGTTGCTTGAAGACTTGAAGTTATGAAA
AGTATTTGAGTTGGAAAAAAAAGGCATAGGAAGCCGATCATGATTATATA
GTTAGTAG
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