CB250329

Overview
NameCB250329
Unique NameCB250329
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7608 contig Csv1_Contig7608:543..1234. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250329 vs. ExPASy Swiss-Prot
Match: CATX_BACSU (Catalase X OS=Bacillus subtilis GN=katX PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.713e-16
Identity = 57/171 (33.33%), Postives = 91/171 (53.22%), Query Frame = 1
Query:    4 AFCPAIVVPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHYDGFMNFM-----HRDEEIDYFPSRYDPVRHAEM--HPTPPEICGGRREKCIIPKENNFNQPGERYRSWAPDRQERFICRWVDALSDPRVTHEIRHIWISYWSQACKSLGQKLASRL 495
            +F   ++V G+ +S+DKLLQ R F+Y+DTQR+R+G NYLQLP+N+PK     N   G M +       ++  ++Y PS    ++ A+       P + G  + +  I + NNF Q GE YR +    +   I   V+ LS  R   EI+   I  +++A    G+++A  L
Sbjct:  346 SFGTGVLVDGLDFSDDKLLQGRTFAYSDTQRYRVGANYLQLPINSPKKHVATNQEGGQMQYRVDRAEGQNPHVNYEPSIMGGLKEAKQDGKDHTPHVEGDVKREA-IDRTNNFGQAGETYRRFTEFERNELITNLVNTLSTCR--KEIQDQMIENFTKADPDYGKRVAEGL 513          
BLAST of CB250329 vs. ExPASy Swiss-Prot
Match: CATA_STAEP (Catalase OS=Staphylococcus epidermidis GN=katA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.713e-16
Identity = 59/177 (33.33%), Postives = 87/177 (49.15%), Query Frame = 1
Query:    4 AFCPAIVVPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNN----HYDGFMNFMHRDE--EIDYFPSRYDPVRHAEMHPTPPEICGGRREKCIIPK--ENNFNQPGERYRSWAPDRQERFICRWVDALSDPRVTHEIRHIWISYWSQACKSLGQKLASRLNVRPN 510
            AF P  +VPG+ YS DK+LQ R+FSY D QR+RLG N+ Q+PVN PK     N      DG M F+  ++     Y+P+          H  PP    G   +    +  +N F QPG+ +R  + D +ER      +A+       ++RHI   Y  +A    G+ +A  L++  N
Sbjct:  314 AFAPTNIVPGLDYSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQPKGVGVENLCPFSRDGQMRFLDNNQGGGPHYYPNNQGIYESQPEHKKPPFPTDGDGYEYNYRQDDDNYFEQPGKLFRLQSEDAKERIFTNTANAMDGVSKDVKVRHIRHCY--KADPEYGKGVAKALDIDIN 488          
BLAST of CB250329 vs. ExPASy Swiss-Prot
Match: CATA_PROMI (Catalase OS=Proteus mirabilis GN=katA PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.713e-16
Identity = 56/146 (38.36%), Postives = 71/146 (48.63%), Query Frame = 1
Query:    4 AFCPAIVVPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHYDGFMNF-MHRDEEIDYFPSRYDPVRHAEMHPTPP-EICGGRREKCIIPKENNFNQPGERYRSWAPDRQERFICRWVDALSDPRVTHEIRHI 435
            AF PA +VPGI +S DK+LQ R+FSY D  R+RLG N+ Q+PVNAPKC  HN H DG M    +    I Y P+     +       PP  I G          E+ F+QP   Y   + D  +R   R    LS      + R I
Sbjct:  312 AFSPANIVPGISFSPDKMLQGRLFSYGDAHRYRLGVNHHQIPVNAPKCPFHNYHRDGAMRVDGNSGNGITYEPNSGGVFQEQPDFKEPPLSIEGAADHWNHREDEDYFSQPRALYELLSDDEHQRMFARIAGELSQASKETQQRQI 457          
BLAST of CB250329 vs. ExPASy Swiss-Prot
Match: CATA_HELPY (Catalase OS=Helicobacter pylori GN=katA PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.713e-16
Identity = 52/131 (39.69%), Postives = 69/131 (52.67%), Query Frame = 1
Query:    4 AFCPAIVVPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHYDGFMNFMHRDEEIDYFPSRYDPVRHAEMHPTPPEICGGRREKCI--------IPKENNFNQPGERYRSWAPDRQER 372
            AF PA VVPGI YS D++LQ R+FSY DT R+RLG NY Q+PVN P+C  H++  DG+M   +     +Y PS   P    +     P+      EK              + + QPG+ YRS   D +ER
Sbjct:  314 AFSPANVVPGIGYSPDRMLQGRLFSYGDTHRYRLGVNYPQIPVNKPRCPFHSSSRDGYMQNGYYGSLQNYTPSSL-PGYKEDKSARDPKFNLAHIEKEFEVWNWDYRADDSDYYTQPGDYYRSLPADEKER 443          
BLAST of CB250329 vs. ExPASy Swiss-Prot
Match: CATA_HELPJ (Catalase OS=Helicobacter pylori J99 GN=katA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.713e-16
Identity = 52/131 (39.69%), Postives = 69/131 (52.67%), Query Frame = 1
Query:    4 AFCPAIVVPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHYDGFMNFMHRDEEIDYFPSRYDPVRHAEMHPTPPEICGGRREKCI--------IPKENNFNQPGERYRSWAPDRQER 372
            AF PA VVPGI YS D++LQ R+FSY DT R+RLG NY Q+PVN P+C  H++  DG+M   +     +Y PS   P    +     P+      EK              + + QPG+ YRS   D +ER
Sbjct:  314 AFTPANVVPGIGYSPDRMLQGRLFSYGDTHRYRLGVNYPQIPVNRPRCPFHSSSRDGYMQNGYYGSLQNYTPSSL-PGYKEDKSARDPKFNLAHIEKEFEVWNWDYRAEDSDYYTQPGDYYRSLPADEKER 443          
BLAST of CB250329 vs. ExPASy Swiss-Prot
Match: CATA_VIBCH (Catalase OS=Vibrio cholerae GN=VC_1585 PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.237e-16
Identity = 57/167 (34.13%), Postives = 89/167 (53.29%), Query Frame = 1
Query:    4 AFCPAIVVPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHYDGFMNFMHRDEEIDYFPSRYDPVRH-AEMHPTPPEICGGRREKCIIPKENNFNQPGERYRSWAPDRQERFICRWVDALSDPRVT-HEIRHIWISYWSQACKSLGQKLASRLN 498
            AF P+ ++PGI  S D+LLQ R+F+YADTQ +RLG N  QLP+N P    ++++ +G  N      +I+Y PSR   ++   +      ++ G  ++K  I    NF Q G  YRS     ++  I      L+  +VT  EI+   +S++ +A K  G +LA   N
Sbjct:  328 AFAPSNLIPGIEPSEDRLLQGRLFAYADTQLYRLGANLFQLPINRPLVEVNSHNQEGASNSAQTASDINYQPSRKLELKEDPQFKAVQTQLVGSVQQKA-ISNPRNFYQAGVLYRSLNEQDKQDLITNLXGBLN--KVTDKEIKATMVSHFYRADKDYGTRLARATN 491          
BLAST of CB250329 vs. ExPASy Swiss-Prot
Match: CATA_STAES (Catalase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=katA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.922e-16
Identity = 59/177 (33.33%), Postives = 86/177 (48.59%), Query Frame = 1
Query:    4 AFCPAIVVPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNN----HYDGFMNFMHRDE--EIDYFPSRYDPVRHAEMHPTPPEICGGRREKCIIPK--ENNFNQPGERYRSWAPDRQERFICRWVDALSDPRVTHEIRHIWISYWSQACKSLGQKLASRLNVRPN 510
            AF P  +VPG+ YS DK+LQ R+FSY D QR+RLG N+ Q+PVN PK     N      DG M F+  ++     Y+P+          H  PP    G   +    +  +N F QPG+ +R  + D +ER      +A+       ++RHI   Y  +A    G+ +A  L +  N
Sbjct:  314 AFTPTNIVPGLDYSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQPKGVGVENLCPFSRDGQMRFLDNNQGGGPHYYPNNQGIYESQPEHKKPPFPTDGDGYEYNYRQDDDNYFEQPGKLFRLQSEDAKERIFTNTANAMDGVSKDVKVRHIRHCY--KADPEYGKGVAKALGIDIN 488          
BLAST of CB250329 vs. ExPASy Swiss-Prot
Match: CATA_STAEQ (Catalase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=katA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.922e-16
Identity = 59/177 (33.33%), Postives = 86/177 (48.59%), Query Frame = 1
Query:    4 AFCPAIVVPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNN----HYDGFMNFMHRDE--EIDYFPSRYDPVRHAEMHPTPPEICGGRREKCIIPK--ENNFNQPGERYRSWAPDRQERFICRWVDALSDPRVTHEIRHIWISYWSQACKSLGQKLASRLNVRPN 510
            AF P  +VPG+ YS DK+LQ R+FSY D QR+RLG N+ Q+PVN PK     N      DG M F+  ++     Y+P+          H  PP    G   +    +  +N F QPG+ +R  + D +ER      +A+       ++RHI   Y  +A    G+ +A  L +  N
Sbjct:  314 AFTPTNIVPGLDYSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQPKGVGVENLCPFSRDGQMRFLDNNQGGGPHYYPNNQGIYESQPEHKKPPFPTDGDGYEYNYRQDDDNYFEQPGKLFRLQSEDAKERIFTNTANAMDGVSKDVKVRHIRHCY--KADPEYGKGVAKALGIDIN 488          
BLAST of CB250329 vs. ExPASy Swiss-Prot
Match: CATA_BORPE (Catalase OS=Bordetella pertussis GN=katA PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.985e-16
Identity = 49/126 (38.89%), Postives = 73/126 (57.94%), Query Frame = 1
Query:    4 AFCPAIVVPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHYDGFMNF-MHRDEEIDYFPSRYDPVRHAEMHPTPPEICGGRREKCIIPK--ENNFNQPGERYRSWAPDRQER 372
            AF PA VVPGI +S DK+LQ R+FSY DT R+RLG N+ Q+PVNAP+C  H+ H DG      +    ++Y P+ +   R A+    PP    G+       +  E+ ++QPG  +R    D++++
Sbjct:  315 AFTPANVVPGIGFSPDKMLQGRLFSYGDTHRYRLGINHHQIPVNAPRCPFHSFHRDGMGRVDGNGGATLNYEPNSFGEWREAKHAAEPPLALDGQAADRWNHRVDEDYYSQPGALFRLMNDDQKQQ 440          
BLAST of CB250329 vs. ExPASy Swiss-Prot
Match: CATA_BORPA (Catalase OS=Bordetella parapertussis GN=katA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.985e-16
Identity = 49/126 (38.89%), Postives = 73/126 (57.94%), Query Frame = 1
Query:    4 AFCPAIVVPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHYDGFMNF-MHRDEEIDYFPSRYDPVRHAEMHPTPPEICGGRREKCIIPK--ENNFNQPGERYRSWAPDRQER 372
            AF PA VVPGI +S DK+LQ R+FSY DT R+RLG N+ Q+PVNAP+C  H+ H DG      +    ++Y P+ +   R A+    PP    G+       +  E+ ++QPG  +R    D++++
Sbjct:  315 AFTPANVVPGIGFSPDKMLQGRLFSYGDTHRYRLGINHHQIPVNAPRCPFHSFHRDGMGRVDGNGGATLNYEPNSFGEWREAKHAAEPPLALDGQAADRWNHRVDEDYYSQPGALFRLMNDDQKQQ 440          
The following BLAST results are available for this feature:
BLAST of CB250329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
CATX_BACSU1.713e-1633.33Catalase X OS=Bacillus subtilis GN=katX PE=3 SV=1[more]
CATA_STAEP1.713e-1633.33Catalase OS=Staphylococcus epidermidis GN=katA PE=... [more]
CATA_PROMI1.713e-1638.36Catalase OS=Proteus mirabilis GN=katA PE=1 SV=1[more]
CATA_HELPY1.713e-1639.69Catalase OS=Helicobacter pylori GN=katA PE=1 SV=2[more]
CATA_HELPJ1.713e-1639.69Catalase OS=Helicobacter pylori J99 GN=katA PE=3 S... [more]
CATA_VIBCH2.237e-1634.13Catalase OS=Vibrio cholerae GN=VC_1585 PE=3 SV=2[more]
CATA_STAES2.922e-1633.33Catalase OS=Staphylococcus epidermidis (strain ATC... [more]
CATA_STAEQ2.922e-1633.33Catalase OS=Staphylococcus epidermidis (strain ATC... [more]
CATA_BORPE4.985e-1638.89Catalase OS=Bordetella pertussis GN=katA PE=1 SV=1[more]
CATA_BORPA4.985e-1638.89Catalase OS=Bordetella parapertussis GN=katA PE=3 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionEST0117 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ169 similar to catalase (acc# P17598), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250329 ID=CB250329; Name=CB250329; organism=Citrus sinensis; type=EST; length=692bp
CTTGCTTTCTGCCCTGCTATTGTGGTTCCTGGCATCTACTATTCAAATGA
TAAGTTGCTCCAGACTCGAATCTTCTCCTATGCTGATACTCAGAGGCACC
GTCTAGGGCCGAACTATCTTCAACTCCCAGTAAATGCACCCAAATGTGCT
CAGCACAACAATCATTATGACGGTTTCATGAATTTCATGCACAGGGATGA
GGAGATCGATTACTTCCCTTCAAGGTATGATCCTGTCCGTCATGCTGAGA
TGCATCCAACTCCTCCTGAAATCTGCGGCGGAAGGCGCGAGAAGTGCATA
ATTCCAAAGGAAAACAACTTCAACCAACCTGGAGAGAGATACCGATCTTG
GGCACCAGACAGGCAAGAGCGATTCATCTGCAGATGGGTTGATGCTTTAT
CTGATCCACGCGTCACCCATGAGATCCGCCACATATGGATCTCATACTGG
TCTCAGGCTTGCAAGTCTCTGGGTCAGAAGTTGGCATCTCGTCTGAATGT
GAGGCCTAACATTTAATGGTGATGCGGAGCTGAGTGATTTAGAAAGAGTT
AGCAAGGAGTAAACACAGAGGACGTCAGCAGTTTAAGGAATGCGAATTCG
TTTTCGGGTGGTGTGTTATTTTGTAATACTAAAAAAAACATGTTGGTCCT
GTAATTCATAAACATGATGTTCCTTAAAATAAATGCTGGTTG
back to top