CB250329

Overview
NameCB250329
Unique NameCB250329
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250329 vs. ExPASy Swiss-Prot
Match: CATA_BORBR (Catalase OS=Bordetella bronchiseptica GN=katA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.985e-16
Identity = 49/126 (38.89%), Postives = 73/126 (57.94%), Query Frame = 1
Query:    4 AFCPAIVVPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHYDGFMNF-MHRDEEIDYFPSRYDPVRHAEMHPTPPEICGGRREKCIIPK--ENNFNQPGERYRSWAPDRQER 372
            AF PA VVPGI +S DK+LQ R+FSY DT R+RLG N+ Q+PVNAP+C  H+ H DG      +    ++Y P+ +   R A+    PP    G+       +  E+ ++QPG  +R    D++++
Sbjct:  315 AFTPANVVPGIGFSPDKMLQGRLFSYGDTHRYRLGINHHQIPVNAPRCPFHSFHRDGMGRVDGNGGATLNYEPNSFGEWREAKHAAEPPLALDGQAADRWNHRVDEDYYSQPGALFRLMNDDQKQQ 440          
BLAST of CB250329 vs. ExPASy Swiss-Prot
Match: CATA_VIBVY (Catalase OS=Vibrio vulnificus (strain YJ016) GN=VVA0294 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.510e-16
Identity = 60/174 (34.48%), Postives = 85/174 (48.85%), Query Frame = 1
Query:    4 AFCPAIVVPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHYDGFMNFMHRDEEIDYFPSRYDPVR--------HAEMHPTPPEICGGRREKCIIPKENNFNQPGERYRSWAPDRQERFICRWVDALSDPRVTHEIRHIWISYWSQACKSLGQKLASRLNV 501
            AF P+ ++PGI  S D+LLQ R+F+YADTQ +RLG N  QLPVN+PK    N++ DG  N       +D     Y+P R         A    TP     G  ++  I    +F Q G  YRS +   +   I      L+      E++ I +SY+ +A K  G +LA   +V
Sbjct:  328 AFAPSNIIPGIEPSEDRLLQGRLFAYADTQLYRLGANLFQLPVNSPKSPVANHNQDGPSNNSTGLGNVDSLDVNYEPSRLVNLTVDKQARAVETP---LSGHVQQQAIRNPRDFFQAGVLYRSLSEQDKADLIHNLSGDLNKVN-DAEVKAIMVSYFYRADKEYGTRLAKATDV 497          
BLAST of CB250329 vs. ExPASy Swiss-Prot
Match: CATA_VIBVU (Catalase OS=Vibrio vulnificus GN=VV2_1473 PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.510e-16
Identity = 60/174 (34.48%), Postives = 85/174 (48.85%), Query Frame = 1
Query:    4 AFCPAIVVPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHYDGFMNFMHRDEEIDYFPSRYDPVR--------HAEMHPTPPEICGGRREKCIIPKENNFNQPGERYRSWAPDRQERFICRWVDALSDPRVTHEIRHIWISYWSQACKSLGQKLASRLNV 501
            AF P+ ++PGI  S D+LLQ R+F+YADTQ +RLG N  QLPVN+PK    N++ DG  N       +D     Y+P R         A    TP     G  ++  I    +F Q G  YRS +   +   I      L+      E++ I +SY+ +A K  G +LA   +V
Sbjct:  328 AFAPSNIIPGIEPSEDRLLQGRLFAYADTQLYRLGANLFQLPVNSPKSPVANHNQDGPSNNSTGLGNVDSLDVNYEPSRLVNLTVDKQARAVETP---LSGHVQQQAIRNPRDFFQAGVLYRSLSEQDKADLIHNLSGDLNKVN-DAEVKAIMVSYFYRADKEYGTRLAKATDV 497          
BLAST of CB250329 vs. ExPASy Swiss-Prot
Match: CATA_VIBPA (Catalase OS=Vibrio parahaemolyticus GN=VPA0305 PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.110e-15
Identity = 55/163 (33.74%), Postives = 87/163 (53.37%), Query Frame = 1
Query:    4 AFCPAIVVPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHYDGFMNFMH-RDEEIDYFPSR-YDPVRHAEMHPTPPEICGGRREKCIIPKENNFNQPGERYRSWAPDRQERFICRWVDALSDPRVTHEIRHIWISYWSQACKSLGQKLA 486
            AF P+ ++PGI  S D+LLQ R+F+YADTQ +RLG N  QLPVN P  + +N++ +G  N     + +++Y PSR  +     +      ++ G  ++K  I K  +F Q G  YRS     +   I      L+   +  +I+   +SY+ +A K  G +LA
Sbjct:  328 AFAPSNLIPGIEPSEDRLLQGRLFAYADTQLYRLGANLFQLPVNRPLTSVNNHNQNGLSNNAQLSNGDVNYEPSRKLNLAEDNQFKAVETKLVGTVQQKA-ISKPRDFYQAGVLYRSMNEQDRSDLIANLAGDLNKV-IDKDIKATMVSYFYRADKEYGSRLA 488          
BLAST of CB250329 vs. ExPASy Swiss-Prot
Match: CATA_DESVM (Catalase OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=katA PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.450e-15
Identity = 54/169 (31.95%), Postives = 82/169 (48.52%), Query Frame = 1
Query:    4 AFCPAIVVPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHYDGFMNF-MHRDEEIDYFPSRYDPVRHAEMHPTPPEICGGRREKCIIPKE--NNFNQPGERYRSWAPDRQERFICRWVDALSDPRVTHEIRHIW------ISYWSQACKSLGQKL 483
            AF PA VVPGI +S DK+LQ R+FSY D  R+RLG N+  +PVNA +C  H+ H DG M    +    + Y P+ Y   +       PP    G        ++  + ++QPG  +R   P +Q+        A+ D     + RH+        +Y +   ++LG K+
Sbjct:  312 AFNPANVVPGISFSPDKMLQGRLFSYGDAHRYRLGVNHHLIPVNAARCPVHSYHRDGAMRVDGNHGSTLAYEPNSYGEWQEQPDFAEPPLAIRGDAAHWNFREDDADYYDQPGRLFRLMTPQQQDELFQNTARAMGDAPEEIKRRHVGNCAKADPAYGAGVARALGLKM 480          
BLAST of CB250329 vs. ExPASy Swiss-Prot
Match: CATA_STAXY (Catalase A OS=Staphylococcus xylosus GN=katA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.511e-15
Identity = 56/177 (31.64%), Postives = 88/177 (49.72%), Query Frame = 1
Query:    4 AFCPAIVVPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNN----HYDGFMNFMHRDE--EIDYFPSRYDPVRHAEMHPTPP-EICGGRREKCIIPKENN-FNQPGERYRSWAPDRQERFICRWVDALSDPRVTHEIRHIWISYWSQACKSLGQKLASRLNVRPN 510
            AF P  +VPG+ +S DK+LQ R+FSY DTQR+RLG N+ Q+PVN PK     N      DG M  +  ++     Y+P+          +  P  +I G   E      ++N F QPG+ +R  + + Q+       + +S   VT  ++H  I +  +A  + GQ +A  + +  N
Sbjct:  311 AFAPTNIVPGLDFSPDKMLQGRLFSYGDTQRYRLGVNHWQIPVNQPKGVGMENICPFSRDGHMRILDNNQGASTHYYPNSNGAFEDQPQYKKPALDIQGQAYEYDFREDDDNYFEQPGKLFRLLSSEEQQILFNNTANEMSP--VTDALKHRHIRHCYKADPAYGQGVAEAMGIDIN 485          
BLAST of CB250329 vs. ExPASy Swiss-Prot
Match: CATA_STAHJ (Catalase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=katA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.511e-15
Identity = 55/177 (31.07%), Postives = 87/177 (49.15%), Query Frame = 1
Query:    4 AFCPAIVVPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNN----HYDGFMNFMHRDE--EIDYFPSRYDPVRHAEMHPTP--PEICGGRREKCIIPKENNFNQPGERYRSWAPDRQERFICRWVDALSDPRVTHEIRHIWISYWSQACKSLGQKLASRLNVRPN 510
            AF P  ++PG+ +S DK+LQ R+FSY D QR+RLG N+ Q+PVN PK     N      DG M F+  ++     Y+P+     +    +  P  P    G         +N F QPG+ +R  + D +ER      +A+    V+ +++H  I +  +A    G+ +A  L +  N
Sbjct:  314 AFAPTNIIPGLDFSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQPKGVGIENMCPFSRDGQMRFLDGNQGGGPHYYPNNKGVYQSQPEYKKPAFPVDGDGYEYNQRQDDDNYFEQPGKLFRLQSDDAKERIFTNTANAMDG--VSEDVKHRHIRHCYKADPEYGKGVAKALEIDIN 488          
BLAST of CB250329 vs. ExPASy Swiss-Prot
Match: CATA_BRUSU (Catalase OS=Brucella suis GN=katA PE=3 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 5.511e-15
Identity = 37/60 (61.67%), Postives = 44/60 (73.33%), Query Frame = 1
Query:    4 AFCPAIVVPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHYDGFMN 183
            AF P+ +VPGI +S DK+LQ RIFSYAD  RHRLG +Y  +PVN PKC  H+ H DG MN
Sbjct:  312 AFSPSNIVPGIGFSPDKMLQARIFSYADAHRHRLGTHYESIPVNQPKCLVHHYHRDGQMN 371          
BLAST of CB250329 vs. ExPASy Swiss-Prot
Match: CATA_BRUME (Catalase OS=Brucella melitensis GN=katA PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.511e-15
Identity = 37/60 (61.67%), Postives = 44/60 (73.33%), Query Frame = 1
Query:    4 AFCPAIVVPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHYDGFMN 183
            AF P+ +VPGI +S DK+LQ RIFSYAD  RHRLG +Y  +PVN PKC  H+ H DG MN
Sbjct:  312 AFSPSNIVPGIGFSPDKMLQARIFSYADAHRHRLGTHYESIPVNQPKCPVHHYHRDGQMN 371          
BLAST of CB250329 vs. ExPASy Swiss-Prot
Match: CATA_BRUAB (Catalase OS=Brucella abortus GN=katA PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.511e-15
Identity = 37/60 (61.67%), Postives = 44/60 (73.33%), Query Frame = 1
Query:    4 AFCPAIVVPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHYDGFMN 183
            AF P+ +VPGI +S DK+LQ RIFSYAD  RHRLG +Y  +PVN PKC  H+ H DG MN
Sbjct:  312 AFSPSNIVPGIGFSPDKMLQARIFSYADAHRHRLGTHYESIPVNQPKCPVHHYHRDGQMN 371          
The following BLAST results are available for this feature:
BLAST of CB250329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
CATA_BORBR4.985e-1638.89Catalase OS=Bordetella bronchiseptica GN=katA PE=3... [more]
CATA_VIBVY6.510e-1634.48Catalase OS=Vibrio vulnificus (strain YJ016) GN=VV... [more]
CATA_VIBVU6.510e-1634.48Catalase OS=Vibrio vulnificus GN=VV2_1473 PE=3 SV=... [more]
CATA_VIBPA1.110e-1533.74Catalase OS=Vibrio parahaemolyticus GN=VPA0305 PE=... [more]
CATA_DESVM1.450e-1531.95Catalase OS=Desulfovibrio vulgaris (strain Miyazak... [more]
CATA_STAXY5.511e-1531.64Catalase A OS=Staphylococcus xylosus GN=katA PE=3 ... [more]
CATA_STAHJ5.511e-1531.07Catalase OS=Staphylococcus haemolyticus (strain JC... [more]
CATA_BRUSU5.511e-1561.67Catalase OS=Brucella suis GN=katA PE=3 SV=3[more]
CATA_BRUME5.511e-1561.67Catalase OS=Brucella melitensis GN=katA PE=3 SV=2[more]
CATA_BRUAB5.511e-1561.67Catalase OS=Brucella abortus GN=katA PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionEST0117 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ169 similar to catalase (acc# P17598), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250329 ID=CB250329; Name=CB250329; organism=Citrus sinensis; type=EST; length=692bp
CTTGCTTTCTGCCCTGCTATTGTGGTTCCTGGCATCTACTATTCAAATGA
TAAGTTGCTCCAGACTCGAATCTTCTCCTATGCTGATACTCAGAGGCACC
GTCTAGGGCCGAACTATCTTCAACTCCCAGTAAATGCACCCAAATGTGCT
CAGCACAACAATCATTATGACGGTTTCATGAATTTCATGCACAGGGATGA
GGAGATCGATTACTTCCCTTCAAGGTATGATCCTGTCCGTCATGCTGAGA
TGCATCCAACTCCTCCTGAAATCTGCGGCGGAAGGCGCGAGAAGTGCATA
ATTCCAAAGGAAAACAACTTCAACCAACCTGGAGAGAGATACCGATCTTG
GGCACCAGACAGGCAAGAGCGATTCATCTGCAGATGGGTTGATGCTTTAT
CTGATCCACGCGTCACCCATGAGATCCGCCACATATGGATCTCATACTGG
TCTCAGGCTTGCAAGTCTCTGGGTCAGAAGTTGGCATCTCGTCTGAATGT
GAGGCCTAACATTTAATGGTGATGCGGAGCTGAGTGATTTAGAAAGAGTT
AGCAAGGAGTAAACACAGAGGACGTCAGCAGTTTAAGGAATGCGAATTCG
TTTTCGGGTGGTGTGTTATTTTGTAATACTAAAAAAAACATGTTGGTCCT
GTAATTCATAAACATGATGTTCCTTAAAATAAATGCTGGTTG
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