CB250329

Overview
NameCB250329
Unique NameCB250329
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250329 vs. ExPASy Swiss-Prot
Match: CATA_LACSK (Catalase OS=Lactobacillus sakei GN=katA PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 7.958e-14
Identity = 61/174 (35.06%), Postives = 91/174 (52.30%), Query Frame = 1
Query:    1 LAFCPAIVVPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHYDGFMNFMHRDEEIDYFPSRYD---PVRHAEMHPTPPEICGGRREKCIIPKENNFNQPGERYRSWAPDRQERFICRW---VDALSDPRVTHEIRHIWISYWSQACKSLGQKLASRLNVR 504
            LAF PA +VPGI  S DKLLQ R+F Y D +R+RLG NY QLPVN PK   HN   DG M   ++   ++Y P+  D    V  A++H    ++ G        P  + ++  G+ YR  + D Q R I      +  ++ P +  +IR +   Y  QA    G+++A+ + +R
Sbjct:  310 LAFSPANLVPGIEASPDKLLQGRLFGYKDAERYRLGANYEQLPVNRPKVPVHNYERDGAM-AQNQATGVNYEPNSQDGPTEVPAAKIH--GDQLSGTTGNFSADP--DYYSAAGKLYRLLSADEQTRLIENIRMNLGQVTKPEI--QIREVKQFY--QADPEYGRRVATSVKLR 474          
BLAST of CB250329 vs. ExPASy Swiss-Prot
Match: CATA_BACFR (Catalase OS=Bacteroides fragilis GN=katA PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13
Identity = 56/173 (32.37%), Postives = 82/173 (47.40%), Query Frame = 1
Query:    4 AFCPAIVVPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHYDGFMNF-MHRDEEIDYFPSRYDPVRHAEMHPTPPEICGG------RREKCIIPKENNFNQPGERYRSWAPDRQERFICRWVDALSDPRVTHEIRHIWISYWSQACKSLGQKLASRLNV 501
            AF P  +V GI +S DK+LQ R+FSY D QR+RLG N  Q+PVN P+C  H  H DG M    +      Y P+ Y   + +     PP    G       RE      ++ ++QPG+ +R    D Q+        A+ D  +  + RH+   Y  +A  + G  +A  L +
Sbjct:  312 AFNPMNIVEGIGFSPDKMLQGRLFSYGDAQRYRLGVNSEQIPVNKPRCPFHAFHRDGAMRVDGNYGSAKGYEPNSYGEWQDSPEKKEPPLKVHGDVFNYNEREY----DDDYYSQPGDLFRLMPADEQQLLFENTARAMGDAELFIKQRHVRNCY--KADPAYGTGVAQALGI 478          
BLAST of CB250329 vs. ExPASy Swiss-Prot
Match: CATB_STAXY (Catalase B OS=Staphylococcus xylosus GN=katB PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.773e-13
Identity = 56/177 (31.64%), Postives = 83/177 (46.89%), Query Frame = 1
Query:    4 AFCPAIVVPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNN----HYDGFMNFMHRDE--EIDYFPSRYDPVRHAEMHPTPPEICGGRREKCIIPK--ENNFNQPGERYRSWAPDRQERFICRWVDALSDPRVTHEIRHIWISYWSQACKSLGQKLASRLNVRPN 510
            AF P  +VPGI +S DK+LQ R+FSY D QR+RLG N+ Q+PVN PK     N      DG M  +  ++     Y+P+             P     G   +    +  +N F QPG  +R  + ++QER      + +     T E++H  I +  +A    G+ +A  L V  N
Sbjct:  313 AFAPTNIVPGIDFSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQPKGVGVENICPFSRDGQMRILDNNQGGGTHYYPNSDGSFEDQPEFKKPGLKVEGEAYEYDFRQDDDNYFEQPGRLFRLQSKEQQERIFENTANEMQG--TTLEVQHRHIRHCYKADSEYGKGVARALGVDIN 487          
BLAST of CB250329 vs. ExPASy Swiss-Prot
Match: CATA_STAS1 (Catalase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=katA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.773e-13
Identity = 54/177 (30.51%), Postives = 83/177 (46.89%), Query Frame = 1
Query:    4 AFCPAIVVPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNN----HYDGFMNFMHRDE--EIDYFPSRYDPVRHAEMHPTPPEICGGRREKCIIPK--ENNFNQPGERYRSWAPDRQERFICRWVDALSDPRVTHEIRHIWISYWSQACKSLGQKLASRLNVRPN 510
            AF P  +VPGI +S D++LQ R+FSY D QR+RLG N+ Q+PVN PK     N      DG M  +  ++     Y+P+             P     G   +    +  +N F QPG  +R  + ++QER      + +     T E++H  I +  +A    G+ +A  L +  N
Sbjct:  313 AFAPTNIVPGIDFSPDRMLQGRLFSYGDAQRYRLGVNHWQIPVNQPKGVGIENICPFSRDGQMRILDNNQGGSTHYYPNSEGAFEDQPEFKKPGLKVEGEAYEYDFREDDDNYFEQPGRLFRLQSKEQQERIFENTANEMQG--TTLEVQHRHIRHCYKADSEYGKGVAKALGIDIN 487          
BLAST of CB250329 vs. ExPASy Swiss-Prot
Match: CATA_EMENI (Catalase A OS=Emericella nidulans GN=catA PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.024e-13
Identity = 41/119 (34.45%), Postives = 66/119 (55.46%), Query Frame = 1
Query:    1 LAFCPAIVVPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHYDGFMNFMHRDEEIDYFPSRYDPVRHA-----EMHPTPPEICGGRREKCIIPKENNFNQPGERY 342
            +AFC + +VPGI +S+D LLQ R FSY DTQ  RLG N+ ++P+N P C   N++ DG          ++Y+P+R++    A     + HP P     GR+ + + PK   ++   + +
Sbjct:  354 VAFCTSHIVPGIDFSDDPLLQGRNFSYQDTQISRLGVNWEEIPINRPVCPFLNHNRDGAKRHRITKGTVNYWPNRFEANPPASDKGFKSHPAP---ITGRKRRDLTPKFKEYHNQAQLF 469          
BLAST of CB250329 vs. ExPASy Swiss-Prot
Match: CATA_SCHPO (Catalase OS=Schizosaccharomyces pombe GN=cta1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.950e-13
Identity = 38/84 (45.24%), Postives = 47/84 (55.95%), Query Frame = 1
Query:    7 FCPAIVVPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHYDGFMNFMHRDEEIDYFPSRYDPVRHAEMHP 258
            F P+ +VPGI  S D +LQ R FSY DT RHRLG N+ Q+PVN+PKC   N   DG MN          +PS   P+   +  P
Sbjct:  320 FSPSHMVPGIEVSADPVLQVRTFSYPDTHRHRLGANFEQIPVNSPKCPVFNYSRDGPMNVNGNQGNWPNYPSSIRPLAKVQYEP 403          
BLAST of CB250329 vs. ExPASy Swiss-Prot
Match: CATA_NEIGO (Catalase OS=Neisseria gonorrhoeae GN=katA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.950e-13
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = 1
Query:    4 AFCPAIVVPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHYDGFMNFMHRDEEIDYFPSRYDP 234
            AF P+ +VPGI  S DK+LQ R+F+YAD QR+RLG N+ Q+PVN P+C  H+N  DG      R  E+   P+ Y+P
Sbjct:  314 AFAPSNLVPGIGASPDKMLQARLFNYADAQRYRLGVNFRQIPVNRPRCPVHSNQRDG----QGRATELRQ-PAHYEP 385          
BLAST of CB250329 vs. ExPASy Swiss-Prot
Match: CATE_BACSU (Catalase-2 OS=Bacillus subtilis GN=katE PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.158e-13
Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = 1
Query:    1 LAFCPAIVVPGIYYSNDKLLQTRIFSYADTQRHRL-GPNYLQLPVNAPKCAQHNNHYDGF 177
            +AF P  VVPGI ++ND LLQ R+FSY DTQ  RL GPN+ ++P+N P C  HNN YDG+
Sbjct:  339 VAFHPGNVVPGIDFTNDPLLQGRLFSYTDTQLIRLGGPNFHEIPINRPVCPFHNNQYDGY 398          
BLAST of CB250329 vs. ExPASy Swiss-Prot
Match: CATA_CAMJE (Catalase OS=Campylobacter jejuni GN=katA PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.158e-13
Identity = 47/148 (31.76%), Postives = 76/148 (51.35%), Query Frame = 1
Query:    4 AFCPAIVVPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHYDGFMNF-MHRDEEIDYFPSRYDPVRHAEMHPTPPEICGGRREKCIIPKENNF-NQPGERYRSWAPDRQERF---ICRWVDALSDPRVTHEIRH 432
            AF P+ +VPGI +S DK+LQ RIFSY D QR+R+G NY  LPVN  K   +  +  G MNF  ++++   Y P+ YD     +     P++      +   P +N+F  QP   +     D++ +    I   ++ + +  +T  + H
Sbjct:  309 AFSPSNIVPGIGFSPDKMLQARIFSYPDAQRYRIGTNYHLLPVNRAKSEVNTYNVAGAMNFDSYKNDAAYYEPNSYDNSPKEDKSYLEPDLVLEGVAQRYAPLDNDFYTQPRALFNLMNDDQKTQLFHNIATSMEGVDEKIITRALEH 456          
BLAST of CB250329 vs. ExPASy Swiss-Prot
Match: CATA_CALJA (Catalase OS=Callithrix jacchus GN=CAT PE=2 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 6.737e-13
Identity = 45/129 (34.88%), Postives = 67/129 (51.94%), Query Frame = 1
Query:    1 LAFCPAIVVPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHY-DGFMNFM-HRDEEIDYFPSRYDPVRHAEMHPTPPEICGGRREKCIIPKENNFNQPGERYRSWAPDRQERFIC 381
            +AF P+ + PGI  S DK+LQ R+FSY DT RHRLGPNYLQ+PVN P  A+  N+  DG M    ++    +Y+P+ +    H          C    ++     ++N  Q    Y +   + Q + +C
Sbjct:  332 IAFDPSNMPPGIEASPDKMLQGRLFSYPDTHRHRLGPNYLQIPVNCPYRARVANYQRDGPMCMQDNQGGAPNYYPNSFGAPEHQPSALEHSTRCSAEVQRFNTANDDNVTQVRAFYVNVLNEEQRKRLC 460          
The following BLAST results are available for this feature:
BLAST of CB250329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
CATA_LACSK7.958e-1435.06Catalase OS=Lactobacillus sakei GN=katA PE=3 SV=2[more]
CATA_BACFR1.039e-1332.37Catalase OS=Bacteroides fragilis GN=katA PE=1 SV=1[more]
CATB_STAXY1.773e-1331.64Catalase B OS=Staphylococcus xylosus GN=katB PE=3 ... [more]
CATA_STAS11.773e-1330.51Catalase OS=Staphylococcus saprophyticus subsp. sa... [more]
CATA_EMENI3.024e-1334.45Catalase A OS=Emericella nidulans GN=catA PE=2 SV=... [more]
CATA_SCHPO3.950e-1345.24Catalase OS=Schizosaccharomyces pombe GN=cta1 PE=1... [more]
CATA_NEIGO3.950e-1349.35Catalase OS=Neisseria gonorrhoeae GN=katA PE=3 SV=... [more]
CATE_BACSU5.158e-1358.33Catalase-2 OS=Bacillus subtilis GN=katE PE=3 SV=2[more]
CATA_CAMJE5.158e-1331.76Catalase OS=Campylobacter jejuni GN=katA PE=1 SV=1[more]
CATA_CALJA6.737e-1334.88Catalase OS=Callithrix jacchus GN=CAT PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionEST0117 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ169 similar to catalase (acc# P17598), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250329 ID=CB250329; Name=CB250329; organism=Citrus sinensis; type=EST; length=692bp
CTTGCTTTCTGCCCTGCTATTGTGGTTCCTGGCATCTACTATTCAAATGA
TAAGTTGCTCCAGACTCGAATCTTCTCCTATGCTGATACTCAGAGGCACC
GTCTAGGGCCGAACTATCTTCAACTCCCAGTAAATGCACCCAAATGTGCT
CAGCACAACAATCATTATGACGGTTTCATGAATTTCATGCACAGGGATGA
GGAGATCGATTACTTCCCTTCAAGGTATGATCCTGTCCGTCATGCTGAGA
TGCATCCAACTCCTCCTGAAATCTGCGGCGGAAGGCGCGAGAAGTGCATA
ATTCCAAAGGAAAACAACTTCAACCAACCTGGAGAGAGATACCGATCTTG
GGCACCAGACAGGCAAGAGCGATTCATCTGCAGATGGGTTGATGCTTTAT
CTGATCCACGCGTCACCCATGAGATCCGCCACATATGGATCTCATACTGG
TCTCAGGCTTGCAAGTCTCTGGGTCAGAAGTTGGCATCTCGTCTGAATGT
GAGGCCTAACATTTAATGGTGATGCGGAGCTGAGTGATTTAGAAAGAGTT
AGCAAGGAGTAAACACAGAGGACGTCAGCAGTTTAAGGAATGCGAATTCG
TTTTCGGGTGGTGTGTTATTTTGTAATACTAAAAAAAACATGTTGGTCCT
GTAATTCATAAACATGATGTTCCTTAAAATAAATGCTGGTTG
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