CB250338

Overview
NameCB250338
Unique NameCB250338
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length457
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H3_ZYGBA (Histone H3 OS=Zygosaccharomyces bailii GN=HHT1 PE=1 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 7.919e-58
Identity = 112/129 (86.82%), Postives = 122/129 (94.57%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 389
            ARKSTGGKAPRKQLASKAARKSAP+TGGVKKPHRY+PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQE+ EAYLV LFEDTNL AIHA+RVTI  KDI+LARR+RGER+
Sbjct:    8 ARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKDIKLARRLRGERS 136
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H3_YEAST (Histone H3 OS=Saccharomyces cerevisiae GN=HHT1 PE=1 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 7.919e-58
Identity = 112/129 (86.82%), Postives = 122/129 (94.57%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 389
            ARKSTGGKAPRKQLASKAARKSAP+TGGVKKPHRY+PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQE+ EAYLV LFEDTNL AIHA+RVTI  KDI+LARR+RGER+
Sbjct:    8 ARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKDIKLARRLRGERS 136
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H3_KLULA (Histone H3 OS=Kluyveromyces lactis GN=HHT1 PE=3 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 7.919e-58
Identity = 112/129 (86.82%), Postives = 122/129 (94.57%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 389
            ARKSTGGKAPRKQLASKAARKSAP+TGGVKKPHRY+PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQE+ EAYLV LFEDTNL AIHA+RVTI  KDI+LARR+RGER+
Sbjct:    8 ARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKDIKLARRLRGERS 136
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H3_CANGA (Histone H3 OS=Candida glabrata GN=HHT1 PE=3 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 7.919e-58
Identity = 112/129 (86.82%), Postives = 122/129 (94.57%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 389
            ARKSTGGKAPRKQLASKAARKSAP+TGGVKKPHRY+PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQE+ EAYLV LFEDTNL AIHA+RVTI  KDI+LARR+RGER+
Sbjct:    8 ARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKDIKLARRLRGERS 136
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H3_ASHGO (Histone H3 OS=Ashbya gossypii GN=HHT1 PE=3 SV=3)

HSP 1 Score: 222.246 bits (565), Expect = 7.919e-58
Identity = 112/129 (86.82%), Postives = 122/129 (94.57%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 389
            ARKSTGGKAPRKQLASKAARKSAP+TGGVKKPHRY+PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQE+ EAYLV LFEDTNL AIHA+RVTI  KDI+LARR+RGER+
Sbjct:    8 ARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKDIKLARRLRGERS 136
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H33L2_CAEEL (Histone H3.3-like type 2 OS=Caenorhabditis elegans GN=his-74 PE=2 SV=3)

HSP 1 Score: 222.246 bits (565), Expect = 7.919e-58
Identity = 113/129 (87.60%), Postives = 122/129 (94.57%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 389
            ARKSTGGKAPRK LA+KAARKSA  TG VKK HR+RPGTVALREIR+YQKSTELL+RKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHA+RVTIMPKD+QLARRIRGER+
Sbjct:    8 ARKSTGGKAPRKALATKAARKSAIVTGSVKKVHRFRPGTVALREIRRYQKSTELLLRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDMQLARRIRGERS 136
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H3_CRYNE (Histone H3 OS=Cryptococcus neoformans GN=HHT1 PE=3 SV=3)

HSP 1 Score: 221.09 bits (562), Expect = 1.764e-57
Identity = 113/131 (86.26%), Postives = 123/131 (93.89%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPT--TGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 389
            ARKSTGGKAPRKQLA+KAARK AP+  +GGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLV LFEDTNL AIHA+RVTI PKD+QLARR+RGER+
Sbjct:    8 ARKSTGGKAPRKQLATKAARKQAPSQVSGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEASEAYLVSLFEDTNLAAIHAKRVTIQPKDLQLARRLRGERS 138
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H33_TETPY (Histone H3.3 OS=Tetrahymena pyriformis PE=1 SV=2)

HSP 1 Score: 220.705 bits (561), Expect = 2.304e-57
Identity = 110/128 (85.94%), Postives = 121/128 (94.53%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGER 386
            ARKSTG KAPRKQLA+KAARKSAP +GGVKKPH++RPGTVALREIRKYQK+T+LLIRKLPFQRLVR+IA + K D+RFQS A+LALQEAAEAYLVGLFEDTNLCAIHARRVTIM KD+QLARRIRGER
Sbjct:    8 ARKSTGVKAPRKQLATKAARKSAPVSGGVKKPHKFRPGTVALREIRKYQKTTDLLIRKLPFQRLVRDIAMEMKNDIRFQSQAILALQEAAEAYLVGLFEDTNLCAIHARRVTIMTKDMQLARRIRGER 135
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H3_EUPCR (Histone H3 OS=Euplotes crassus PE=3 SV=3)

HSP 1 Score: 220.32 bits (560), Expect = 3.009e-57
Identity = 110/129 (85.27%), Postives = 120/129 (93.02%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 389
            ARK+ GGKAPRK +  K+ARK+A TT G+KKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQ+FK DLRFQS AVLALQEAAEAYLV LFEDTNLCAIHA+RVTIMPKD+QLARRIRGER+
Sbjct:    8 ARKNVGGKAPRKHIGQKSARKTASTTAGMKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQEFKGDLRFQSSAVLALQEAAEAYLVSLFEDTNLCAIHAKRVTIMPKDMQLARRIRGERS 136
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H33_TETTH (Histone H3.3 OS=Tetrahymena thermophila GN=HHT3 PE=1 SV=2)

HSP 1 Score: 219.55 bits (558), Expect = 5.133e-57
Identity = 109/128 (85.16%), Postives = 121/128 (94.53%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGER 386
            ARKSTG KAPRKQLA+KAARKSAP +GGVKKPH++RPGTVALREIRKYQK+T+LLIRKLPFQRLVR+IA + K+D+RFQS A+LALQEAAEAYLVGLFEDTNLCAIHARRVTIM KD+ LARRIRGER
Sbjct:    8 ARKSTGVKAPRKQLATKAARKSAPVSGGVKKPHKFRPGTVALREIRKYQKTTDLLIRKLPFQRLVRDIAMEMKSDIRFQSQAILALQEAAEAYLVGLFEDTNLCAIHARRVTIMTKDLHLARRIRGER 135
The following BLAST results are available for this feature:
BLAST of CB250338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H3_ZYGBA7.919e-5886.82Histone H3 OS=Zygosaccharomyces bailii GN=HHT1 PE=... [more]
H3_YEAST7.919e-5886.82Histone H3 OS=Saccharomyces cerevisiae GN=HHT1 PE=... [more]
H3_KLULA7.919e-5886.82Histone H3 OS=Kluyveromyces lactis GN=HHT1 PE=3 SV... [more]
H3_CANGA7.919e-5886.82Histone H3 OS=Candida glabrata GN=HHT1 PE=3 SV=2[more]
H3_ASHGO7.919e-5886.82Histone H3 OS=Ashbya gossypii GN=HHT1 PE=3 SV=3[more]
H33L2_CAEEL7.919e-5887.60Histone H3.3-like type 2 OS=Caenorhabditis elegans... [more]
H3_CRYNE1.764e-5786.26Histone H3 OS=Cryptococcus neoformans GN=HHT1 PE=3... [more]
H33_TETPY2.304e-5785.94Histone H3.3 OS=Tetrahymena pyriformis PE=1 SV=2[more]
H3_EUPCR3.009e-5785.27Histone H3 OS=Euplotes crassus PE=3 SV=3[more]
H33_TETTH5.133e-5785.16Histone H3.3 OS=Tetrahymena thermophila GN=HHT3 PE... [more]

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Properties
Property NameValue
Genbank descriptionEST0127 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ190 similar to histone H3.3 (acc# NP_195713), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250338 ID=CB250338; Name=CB250338; organism=Citrus sinensis; type=EST; length=457bp
CTGCTCGCAAATCCACCGGCGGCAAGGCTCCCAGGAAGCAGCTCGCCAGT
AAGGCTGCTAGGAAGTCTGCACCTACCACTGGTGGAGTCAAGAAACCTCA
CCGTTACCGCCCAGGAACTGTTGCTCTTCGTGAAATTCGGAAGTATCAGA
AAAGCACTGAGCTTTTGATCCGTAAGCTGCCCTTCCAACGACTTGTTCGT
GAAATTGCTCAAGACTTCAAGACGGATTTGAGGTTCCAGAGCCACGCTGT
TCTTGCACTTCAGGAAGCTGCAGAGGCCTACCTTGTTGGTTTATTTGAAG
ATACAAATCTGTGTGCCATTCATGCCAGGAGGGTGACTATCATGCCAAAG
GACATTCAGCTTGCCAGGCGAATTCGTGGAGAAAGGGCGTAGTTTTGTGC
TTTGATTGTTGTTCATTAATTTCATTCTCATTTATTCTACATTCAGACTT
ATTCTGG
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