CB250338

Overview
NameCB250338
Unique NameCB250338
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length457
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H32_BOVIN (Histone H3.2 OS=Bos taurus PE=1 SV=2)

HSP 1 Score: 241.891 bits (616), Expect = 9.658e-64
Identity = 122/129 (94.57%), Postives = 127/129 (98.45%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 389
            ARKSTGGKAPRKQLA+KAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHA+RVTIMPKDIQLARRIRGERA
Sbjct:    8 ARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H32_TOBAC (Histone H3.2 OS=Nicotiana tabacum GN=B34 PE=1 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 1.261e-63
Identity = 123/129 (95.35%), Postives = 126/129 (97.67%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 389
            ARKSTGGKAPRKQLA+KAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHA+RVTIMPKDIQLARRIRGERA
Sbjct:    8 ARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H32_PETCR (Histone H3.2 OS=Petroselinum crispum GN=H3-7 PE=3 SV=2)

HSP 1 Score: 241.506 bits (615), Expect = 1.261e-63
Identity = 123/129 (95.35%), Postives = 126/129 (97.67%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 389
            ARKSTGGKAPRKQLA+KAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHA+RVTIMPKDIQLARRIRGERA
Sbjct:    8 ARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H32_ORYSJ (Histone H3.2 OS=Oryza sativa subsp. japonica GN=Os01g0866200 PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 1.261e-63
Identity = 123/129 (95.35%), Postives = 126/129 (97.67%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 389
            ARKSTGGKAPRKQLA+KAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHA+RVTIMPKDIQLARRIRGERA
Sbjct:    8 ARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H32_ORYSI (Histone H3.2 OS=Oryza sativa subsp. indica GN=OsI_019426 PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 1.261e-63
Identity = 123/129 (95.35%), Postives = 126/129 (97.67%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 389
            ARKSTGGKAPRKQLA+KAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHA+RVTIMPKDIQLARRIRGERA
Sbjct:    8 ARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H32_MAIZE (Histone H3.2 OS=Zea mays GN=H3C2 PE=1 SV=2)

HSP 1 Score: 241.506 bits (615), Expect = 1.261e-63
Identity = 123/129 (95.35%), Postives = 126/129 (97.67%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 389
            ARKSTGGKAPRKQLA+KAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHA+RVTIMPKDIQLARRIRGERA
Sbjct:    8 ARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H32_EUPES (Histone H3.2 OS=Euphorbia esula GN=H3 PE=2 SV=3)

HSP 1 Score: 241.506 bits (615), Expect = 1.261e-63
Identity = 123/129 (95.35%), Postives = 126/129 (97.67%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 389
            ARKSTGGKAPRKQLA+KAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHA+RVTIMPKDIQLARRIRGERA
Sbjct:    8 ARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H32_BRANA (Histone H3.2 OS=Brassica napus PE=2 SV=3)

HSP 1 Score: 241.506 bits (615), Expect = 1.261e-63
Identity = 123/129 (95.35%), Postives = 126/129 (97.67%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 389
            ARKSTGGKAPRKQLA+KAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHA+RVTIMPKDIQLARRIRGERA
Sbjct:    8 ARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H32_ASPOF (Histone H3.2 OS=Asparagus officinalis PE=2 SV=3)

HSP 1 Score: 241.506 bits (615), Expect = 1.261e-63
Identity = 123/129 (95.35%), Postives = 126/129 (97.67%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 389
            ARKSTGGKAPRKQLA+KAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHA+RVTIMPKDIQLARRIRGERA
Sbjct:    8 ARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H32_ARATH (Histone H3.2 OS=Arabidopsis thaliana GN=HTR2 PE=1 SV=2)

HSP 1 Score: 241.506 bits (615), Expect = 1.261e-63
Identity = 123/129 (95.35%), Postives = 126/129 (97.67%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 389
            ARKSTGGKAPRKQLA+KAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHA+RVTIMPKDIQLARRIRGERA
Sbjct:    8 ARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
The following BLAST results are available for this feature:
BLAST of CB250338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H32_BOVIN9.658e-6494.57Histone H3.2 OS=Bos taurus PE=1 SV=2[more]
H32_TOBAC1.261e-6395.35Histone H3.2 OS=Nicotiana tabacum GN=B34 PE=1 SV=1[more]
H32_PETCR1.261e-6395.35Histone H3.2 OS=Petroselinum crispum GN=H3-7 PE=3 ... [more]
H32_ORYSJ1.261e-6395.35Histone H3.2 OS=Oryza sativa subsp. japonica GN=Os... [more]
H32_ORYSI1.261e-6395.35Histone H3.2 OS=Oryza sativa subsp. indica GN=OsI_... [more]
H32_MAIZE1.261e-6395.35Histone H3.2 OS=Zea mays GN=H3C2 PE=1 SV=2[more]
H32_EUPES1.261e-6395.35Histone H3.2 OS=Euphorbia esula GN=H3 PE=2 SV=3[more]
H32_BRANA1.261e-6395.35Histone H3.2 OS=Brassica napus PE=2 SV=3[more]
H32_ASPOF1.261e-6395.35Histone H3.2 OS=Asparagus officinalis PE=2 SV=3[more]
H32_ARATH1.261e-6395.35Histone H3.2 OS=Arabidopsis thaliana GN=HTR2 PE=1 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionEST0127 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ190 similar to histone H3.3 (acc# NP_195713), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250338 ID=CB250338; Name=CB250338; organism=Citrus sinensis; type=EST; length=457bp
CTGCTCGCAAATCCACCGGCGGCAAGGCTCCCAGGAAGCAGCTCGCCAGT
AAGGCTGCTAGGAAGTCTGCACCTACCACTGGTGGAGTCAAGAAACCTCA
CCGTTACCGCCCAGGAACTGTTGCTCTTCGTGAAATTCGGAAGTATCAGA
AAAGCACTGAGCTTTTGATCCGTAAGCTGCCCTTCCAACGACTTGTTCGT
GAAATTGCTCAAGACTTCAAGACGGATTTGAGGTTCCAGAGCCACGCTGT
TCTTGCACTTCAGGAAGCTGCAGAGGCCTACCTTGTTGGTTTATTTGAAG
ATACAAATCTGTGTGCCATTCATGCCAGGAGGGTGACTATCATGCCAAAG
GACATTCAGCTTGCCAGGCGAATTCGTGGAGAAAGGGCGTAGTTTTGTGC
TTTGATTGTTGTTCATTAATTTCATTCTCATTTATTCTACATTCAGACTT
ATTCTGG
back to top