CB250338

Overview
NameCB250338
Unique NameCB250338
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length457
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7137 contig Csv1_Contig7137:100..556. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H31_RAT (Histone H3.1 OS=Rattus norvegicus PE=1 SV=3)

HSP 1 Score: 241.506 bits (615), Expect = 1.261e-63
Identity = 122/129 (94.57%), Postives = 126/129 (97.67%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 389
            ARKSTGGKAPRKQLA+KAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA EAYLVGLFEDTNLCAIHA+RVTIMPKDIQLARRIRGERA
Sbjct:    8 ARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H31_MUSPA (Histone H3.1 OS=Mus pahari GN=H3110 PE=2 SV=3)

HSP 1 Score: 241.506 bits (615), Expect = 1.261e-63
Identity = 122/129 (94.57%), Postives = 126/129 (97.67%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 389
            ARKSTGGKAPRKQLA+KAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA EAYLVGLFEDTNLCAIHA+RVTIMPKDIQLARRIRGERA
Sbjct:    8 ARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H31_MOUSE (Histone H3.1 OS=Mus musculus GN=Hist1h3a PE=1 SV=2)

HSP 1 Score: 241.506 bits (615), Expect = 1.261e-63
Identity = 122/129 (94.57%), Postives = 126/129 (97.67%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 389
            ARKSTGGKAPRKQLA+KAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA EAYLVGLFEDTNLCAIHA+RVTIMPKDIQLARRIRGERA
Sbjct:    8 ARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H31_HUMAN (Histone H3.1 OS=Homo sapiens GN=HIST1H3A PE=1 SV=2)

HSP 1 Score: 241.506 bits (615), Expect = 1.261e-63
Identity = 122/129 (94.57%), Postives = 126/129 (97.67%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 389
            ARKSTGGKAPRKQLA+KAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA EAYLVGLFEDTNLCAIHA+RVTIMPKDIQLARRIRGERA
Sbjct:    8 ARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H31_BOVIN (Histone H3.1 OS=Bos taurus PE=1 SV=2)

HSP 1 Score: 241.506 bits (615), Expect = 1.261e-63
Identity = 122/129 (94.57%), Postives = 126/129 (97.67%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 389
            ARKSTGGKAPRKQLA+KAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA EAYLVGLFEDTNLCAIHA+RVTIMPKDIQLARRIRGERA
Sbjct:    8 ARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H3L3_ARATH (Histone H3-like 3 OS=Arabidopsis thaliana GN=At1g75600 PE=2 SV=3)

HSP 1 Score: 241.121 bits (614), Expect = 1.647e-63
Identity = 122/129 (94.57%), Postives = 126/129 (97.67%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 389
            ARKS GGKAPR  LA+KAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQD+KTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHA+RVTIMPKD+QLARRIRGERA
Sbjct:    8 ARKSHGGKAPRTLLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDYKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRGERA 136
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H32_WHEAT (Histone H3.2 OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 1.647e-63
Identity = 123/129 (95.35%), Postives = 126/129 (97.67%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 389
            ARKSTGGKAPRKQLA+KAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHA+RVTIMPKDIQLARRIRGERA
Sbjct:    8 ARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H32_PEA (Histone H3.2 OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 1.647e-63
Identity = 123/129 (95.35%), Postives = 126/129 (97.67%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 389
            ARKSTGGKAPRKQLA+KAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHA+RVTIMPKDIQLARRIRGERA
Sbjct:    8 ARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H32_ONOVI (Histone H3.2 OS=Onobrychis viciifolia PE=2 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 1.647e-63
Identity = 123/129 (95.35%), Postives = 126/129 (97.67%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 389
            ARKSTGGKAPRKQLA+KAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHA+RVTIMPKDIQLARRIRGERA
Sbjct:    8 ARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H32_MEDSA (Histone H3.2 OS=Medicago sativa GN=H3-1.1 PE=1 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 1.647e-63
Identity = 123/129 (95.35%), Postives = 126/129 (97.67%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 389
            ARKSTGGKAPRKQLA+KAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHA+RVTIMPKDIQLARRIRGERA
Sbjct:    8 ARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
The following BLAST results are available for this feature:
BLAST of CB250338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H31_RAT1.261e-6394.57Histone H3.1 OS=Rattus norvegicus PE=1 SV=3[more]
H31_MUSPA1.261e-6394.57Histone H3.1 OS=Mus pahari GN=H3110 PE=2 SV=3[more]
H31_MOUSE1.261e-6394.57Histone H3.1 OS=Mus musculus GN=Hist1h3a PE=1 SV=2[more]
H31_HUMAN1.261e-6394.57Histone H3.1 OS=Homo sapiens GN=HIST1H3A PE=1 SV=2[more]
H31_BOVIN1.261e-6394.57Histone H3.1 OS=Bos taurus PE=1 SV=2[more]
H3L3_ARATH1.647e-6394.57Histone H3-like 3 OS=Arabidopsis thaliana GN=At1g7... [more]
H32_WHEAT1.647e-6395.35Histone H3.2 OS=Triticum aestivum PE=1 SV=2[more]
H32_PEA1.647e-6395.35Histone H3.2 OS=Pisum sativum PE=1 SV=2[more]
H32_ONOVI1.647e-6395.35Histone H3.2 OS=Onobrychis viciifolia PE=2 SV=2[more]
H32_MEDSA1.647e-6395.35Histone H3.2 OS=Medicago sativa GN=H3-1.1 PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionEST0127 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ190 similar to histone H3.3 (acc# NP_195713), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250338 ID=CB250338; Name=CB250338; organism=Citrus sinensis; type=EST; length=457bp
CTGCTCGCAAATCCACCGGCGGCAAGGCTCCCAGGAAGCAGCTCGCCAGT
AAGGCTGCTAGGAAGTCTGCACCTACCACTGGTGGAGTCAAGAAACCTCA
CCGTTACCGCCCAGGAACTGTTGCTCTTCGTGAAATTCGGAAGTATCAGA
AAAGCACTGAGCTTTTGATCCGTAAGCTGCCCTTCCAACGACTTGTTCGT
GAAATTGCTCAAGACTTCAAGACGGATTTGAGGTTCCAGAGCCACGCTGT
TCTTGCACTTCAGGAAGCTGCAGAGGCCTACCTTGTTGGTTTATTTGAAG
ATACAAATCTGTGTGCCATTCATGCCAGGAGGGTGACTATCATGCCAAAG
GACATTCAGCTTGCCAGGCGAATTCGTGGAGAAAGGGCGTAGTTTTGTGC
TTTGATTGTTGTTCATTAATTTCATTCTCATTTATTCTACATTCAGACTT
ATTCTGG
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