CB250338

Overview
NameCB250338
Unique NameCB250338
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length457
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7137 contig Csv1_Contig7137:100..556. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H3_ACRFO (Histone H3 OS=Acropora formosa PE=3 SV=2)

HSP 1 Score: 240.35 bits (612), Expect = 2.810e-63
Identity = 122/129 (94.57%), Postives = 126/129 (97.67%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 389
            ARKSTGGKAPRKQLA+KAA KSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AVLALQEA+EAYLVGLFEDTNLCAIHA+RVTIMPKDIQLARRIRGERA
Sbjct:    8 ARKSTGGKAPRKQLATKAAAKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H33_TRIPS (Histone H3.3 OS=Trichinella pseudospiralis GN=HHT3 PE=2 SV=3)

HSP 1 Score: 240.35 bits (612), Expect = 2.810e-63
Identity = 122/129 (94.57%), Postives = 127/129 (98.45%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 389
            ARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEAAEAYLVGLFEDTNLCAIHA+RVTIMPKDIQLARRIRGERA
Sbjct:    8 ARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H32_ENCAL (Histone H3.2 OS=Encephalartos altensteinii PE=1 SV=2)

HSP 1 Score: 240.35 bits (612), Expect = 2.810e-63
Identity = 122/129 (94.57%), Postives = 126/129 (97.67%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 389
            ARKSTGGKAPRKQLA+KAARKSAP TGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHA+RVTIMPKDIQLARRIRGERA
Sbjct:    8 ARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H32_CRILO (Histone H3.2 OS=Cricetulus longicaudatus PE=2 SV=3)

HSP 1 Score: 240.35 bits (612), Expect = 2.810e-63
Identity = 121/129 (93.80%), Postives = 126/129 (97.67%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 389
            ARKSTGGKAPRKQLA+KAARKSAP TGGVKKPHRYRPGTV LREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHA+RVTIMPKDIQLARRIRGERA
Sbjct:    8 ARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVTLREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H332_CAEEL (Histone H3.3 type 2 OS=Caenorhabditis elegans GN=his-72 PE=1 SV=3)

HSP 1 Score: 239.58 bits (610), Expect = 4.793e-63
Identity = 121/129 (93.80%), Postives = 127/129 (98.45%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 389
            ARKSTGGKAPRKQLA+KAARKSAPTTGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHA+RVTIMPKD+QLARRIRGERA
Sbjct:    8 ARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDMQLARRIRGERA 136
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H33_XENTR (Histone H3.3 OS=Xenopus tropicalis GN=TGas113e22.1 PE=1 SV=3)

HSP 1 Score: 239.195 bits (609), Expect = 6.260e-63
Identity = 121/129 (93.80%), Postives = 127/129 (98.45%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 389
            ARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHA+RVTIMPKDIQLARRIRGERA
Sbjct:    8 ARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H33_XENLA (Histone H3.3 OS=Xenopus laevis PE=1 SV=3)

HSP 1 Score: 239.195 bits (609), Expect = 6.260e-63
Identity = 121/129 (93.80%), Postives = 127/129 (98.45%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 389
            ARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHA+RVTIMPKDIQLARRIRGERA
Sbjct:    8 ARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H33_SPISO (Histone H3.3 OS=Spisula solidissima PE=1 SV=2)

HSP 1 Score: 239.195 bits (609), Expect = 6.260e-63
Identity = 121/129 (93.80%), Postives = 127/129 (98.45%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 389
            ARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHA+RVTIMPKDIQLARRIRGERA
Sbjct:    8 ARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H33_RAT (Histone H3.3 OS=Rattus norvegicus GN=H3f3b PE=1 SV=2)

HSP 1 Score: 239.195 bits (609), Expect = 6.260e-63
Identity = 121/129 (93.80%), Postives = 127/129 (98.45%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 389
            ARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHA+RVTIMPKDIQLARRIRGERA
Sbjct:    8 ARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H33_RABIT (Histone H3.3 OS=Oryctolagus cuniculus GN=H3F3A PE=2 SV=2)

HSP 1 Score: 239.195 bits (609), Expect = 6.260e-63
Identity = 121/129 (93.80%), Postives = 127/129 (98.45%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 389
            ARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHA+RVTIMPKDIQLARRIRGERA
Sbjct:    8 ARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
The following BLAST results are available for this feature:
BLAST of CB250338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H3_ACRFO2.810e-6394.57Histone H3 OS=Acropora formosa PE=3 SV=2[more]
H33_TRIPS2.810e-6394.57Histone H3.3 OS=Trichinella pseudospiralis GN=HHT3... [more]
H32_ENCAL2.810e-6394.57Histone H3.2 OS=Encephalartos altensteinii PE=1 SV... [more]
H32_CRILO2.810e-6393.80Histone H3.2 OS=Cricetulus longicaudatus PE=2 SV=3[more]
H332_CAEEL4.793e-6393.80Histone H3.3 type 2 OS=Caenorhabditis elegans GN=h... [more]
H33_XENTR6.260e-6393.80Histone H3.3 OS=Xenopus tropicalis GN=TGas113e22.1... [more]
H33_XENLA6.260e-6393.80Histone H3.3 OS=Xenopus laevis PE=1 SV=3[more]
H33_SPISO6.260e-6393.80Histone H3.3 OS=Spisula solidissima PE=1 SV=2[more]
H33_RAT6.260e-6393.80Histone H3.3 OS=Rattus norvegicus GN=H3f3b PE=1 SV... [more]
H33_RABIT6.260e-6393.80Histone H3.3 OS=Oryctolagus cuniculus GN=H3F3A PE=... [more]

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Properties
Property NameValue
Genbank descriptionEST0127 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ190 similar to histone H3.3 (acc# NP_195713), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250338 ID=CB250338; Name=CB250338; organism=Citrus sinensis; type=EST; length=457bp
CTGCTCGCAAATCCACCGGCGGCAAGGCTCCCAGGAAGCAGCTCGCCAGT
AAGGCTGCTAGGAAGTCTGCACCTACCACTGGTGGAGTCAAGAAACCTCA
CCGTTACCGCCCAGGAACTGTTGCTCTTCGTGAAATTCGGAAGTATCAGA
AAAGCACTGAGCTTTTGATCCGTAAGCTGCCCTTCCAACGACTTGTTCGT
GAAATTGCTCAAGACTTCAAGACGGATTTGAGGTTCCAGAGCCACGCTGT
TCTTGCACTTCAGGAAGCTGCAGAGGCCTACCTTGTTGGTTTATTTGAAG
ATACAAATCTGTGTGCCATTCATGCCAGGAGGGTGACTATCATGCCAAAG
GACATTCAGCTTGCCAGGCGAATTCGTGGAGAAAGGGCGTAGTTTTGTGC
TTTGATTGTTGTTCATTAATTTCATTCTCATTTATTCTACATTCAGACTT
ATTCTGG
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