CB250339
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: YUM14_USTMA (Putative DEAH-box ATP-dependent helicase UM11114 OS=Ustilago maydis GN=UM11114 PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 1.141e-20 Identity = 51/136 (37.50%), Postives = 87/136 (63.97%), Query Frame = 3 Query: 3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGR-IKIFLSKALEPPKEEAITTAISVLYEVGAIEGDE----ELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAK 395 +R+ EK M Q PEM+R+PL L L++K + +K +L+KAL+PP ++ A++ L E GA++ D LT LG HLA+LP+D+ + K+++ G IFGCL P+L++++ +S K F P ++++ +A+ Sbjct: 1152 SRYVDEKKMAAQQTPEMRRVPLESLFLEVKSMREDEDVKEYLNKALDPPSLASMDAALTNLIEAGALQSDRGYKSRLTSLGKHLAQLPLDLRLAKLLIMGTIFGCLGPMLTVASIMSCKPLFNTPFEKREEASKAR 1287
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX9_BOVIN (ATP-dependent RNA helicase A OS=Bos taurus GN=DHX9 PE=2 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 1.141e-20 Identity = 56/118 (47.46%), Postives = 75/118 (63.56%), Query Frame = 3 Query: 3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFI 356 +R R+E+L + PEM R PL E+ L IKLL LG I FL+KA+EPP +A+ A L E+ A++ ++ELTPLG LAKLP++ GKMM+ G IF I +ISA + PFI Sbjct: 775 SRARFERL-ETHMTPEMFRTPLHEIALSIKLLRLGGIGQFLAKAIEPPPLDAVIEAEHTLRELDALDANDELTPLGRILAKLPIEPRFGKMMIMGCIFYVGDAICTISAATCFPEPFI 891
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: YTDC2_PONAB (YTH domain-containing protein 2 OS=Pongo abelii GN=YTHDC2 PE=2 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 1.491e-20 Identity = 52/119 (43.70%), Postives = 73/119 (61.34%), Query Frame = 3 Query: 27 MRPYQVPEMQRMPLVELCLQIKLLSLGRIKI--FLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQ 377 M +Q PE+ RMPL ELCL KLL+ + FL KA EPP + A+ +L + A++ E+LT LG+HLA LPV+ +GKM+L + CL PIL+I+ L+Y+ PF+ P Q Sbjct: 1 MLEFQTPELLRMPLQELCLHTKLLAPVNCPVADFLMKAPEPPPALIVRNAVQMLKTIDAMDTWEDLTELGYHLADLPVEPHLGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQ 119
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX9_PONAB (ATP-dependent RNA helicase A OS=Pongo abelii GN=DHX9 PE=2 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 2.542e-20 Identity = 55/118 (46.61%), Postives = 75/118 (63.56%), Query Frame = 3 Query: 3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFI 356 +R R+E+L + PEM R PL E+ L IKLL LG I FL+KA+EPP +A+ A L E+ A++ ++ELTPLG LAKLP++ GKMM+ G IF I +I+A + PFI Sbjct: 778 SRARFERL-ETHMTPEMFRTPLHEIALSIKLLRLGGIGQFLAKAIEPPPLDAVIEAEHTLRELDALDANDELTPLGRILAKLPIEPRFGKMMIMGCIFYVGDAICTIAAATCFPEPFI 894
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX9_MOUSE (ATP-dependent RNA helicase A OS=Mus musculus GN=Dhx9 PE=1 SV=2) HSP 1 Score: 97.8265 bits (242), Expect = 2.542e-20 Identity = 55/118 (46.61%), Postives = 75/118 (63.56%), Query Frame = 3 Query: 3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFI 356 +R R+++L + PEM R PL E+ L IKLL LG I FL+KA+EPP +AI A L E+ A++ ++ELTPLG LAKLP++ GKMM+ G IF + +ISA + PFI Sbjct: 780 SRARFDRL-ETHMTPEMFRTPLHEIALSIKLLRLGGIGQFLAKAIEPPPLDAIIEAEHTLRELDALDANDELTPLGRILAKLPIEPRFGKMMIMGCIFYVGDAVCTISAATCFPEPFI 896
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX9_HUMAN (ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4) HSP 1 Score: 97.8265 bits (242), Expect = 2.542e-20 Identity = 55/118 (46.61%), Postives = 75/118 (63.56%), Query Frame = 3 Query: 3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFI 356 +R R+E+L + PEM R PL E+ L IKLL LG I FL+KA+EPP +A+ A L E+ A++ ++ELTPLG LAKLP++ GKMM+ G IF I +I+A + PFI Sbjct: 778 SRARFERL-ETHMTPEMFRTPLHEIALSIKLLRLGGIGQFLAKAIEPPPLDAVIEAEHTLRELDALDANDELTPLGRILAKLPIEPRFGKMMIMGCIFYVGDAICTIAAATCFPEPFI 894
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX34_HUMAN (Probable ATP-dependent RNA helicase DHX34 OS=Homo sapiens GN=DHX34 PE=2 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 3.321e-20 Identity = 50/107 (46.73%), Postives = 74/107 (69.16%), Query Frame = 3 Query: 33 PYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPF 353 PY VPE++R+ L L LQ+K +S+G + F +EPP ++ TAI L + GA++ E LTP+G LA+LPVDV+IGKM++ G +F + P+L+I+A LS +SPF Sbjct: 429 PYPVPEIRRVALDSLVLQMKSMSVGDPRTF--PFIEPPPPASLETAILYLRDQGALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALSVQSPF 533
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX9_XENLA (ATP-dependent RNA helicase A-like protein OS=Xenopus laevis GN=dhx9 PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 7.398e-20 Identity = 54/118 (45.76%), Postives = 76/118 (64.41%), Query Frame = 3 Query: 3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFI 356 ++ R++KL + PE+ R PL E+ L IKLL LG I FLSKA+EPP +A+ A L E+ A++ ++ELTPLG LAKLP++ +GKMM+ G IF + +ISA + PFI Sbjct: 780 SKARFDKL-ETHLTPEIFRTPLHEVALSIKLLRLGGIGHFLSKAIEPPPLDAVIEAEHTLRELDALDSNDELTPLGRILAKLPIEPRLGKMMIIGCIFYVGDALCTISAATCFPEPFI 896
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: MLE_DROME (Dosage compensation regulator OS=Drosophila melanogaster GN=mle PE=1 SV=2) HSP 1 Score: 95.1301 bits (235), Expect = 1.648e-19 Identity = 52/103 (50.49%), Postives = 71/103 (68.93%), Query Frame = 3 Query: 45 PEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPF 353 PEM R PL E+ L IKLL LG I FLSKALEPP +A+ A +L E+ ++ ++ELTPLG LA+LP++ +GKMM+ G +FGC + +++I A SY S F Sbjct: 795 PEMFRTPLHEMALTIKLLRLGSIHHFLSKALEPPPVDAVIEAEVLLREMRCLDANDELTPLGRLLARLPIEPRLGKMMVLGAVFGC-ADLMAIMA--SYSSTF 894
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: YG65_SCHPO (Uncharacterized helicase C15C4.05 OS=Schizosaccharomyces pombe GN=SPBC15C4.05 PE=2 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.068e-18 Identity = 46/133 (34.59%), Postives = 81/133 (60.90%), Query Frame = 3 Query: 3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLA 401 ++ +++ YQ PE+ R+ L E+ L++K+ +G ++ L KAL+PP I A+ L++VGA+ +E+LT LG L++LPVD +GK+++ G + C+ SI A L+ SPF D + + +A+L+ Sbjct: 1032 SKFKHDTQFLSYQTPEILRLNLQEVVLRVKMCQMGDVQDVLGKALDPPSSTNIIRALEKLHQVGALSENEKLTKLGKFLSQLPVDANLGKILVLGCFYKCVDAASSIVAMLTIGSPFRKSVDNEFSANKARLS 1164 The following BLAST results are available for this feature:
BLAST of CB250339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 50
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Sequences
The
following sequences are available for this feature:
EST sequence >CB250339 ID=CB250339; Name=CB250339; organism=Citrus sinensis; type=EST; length=478bpback to top |