CB250339

Overview
NameCB250339
Unique NameCB250339
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length478
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: YUM14_USTMA (Putative DEAH-box ATP-dependent helicase UM11114 OS=Ustilago maydis GN=UM11114 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.141e-20
Identity = 51/136 (37.50%), Postives = 87/136 (63.97%), Query Frame = 3
Query:    3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGR-IKIFLSKALEPPKEEAITTAISVLYEVGAIEGDE----ELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAK 395
            +R+  EK M   Q PEM+R+PL  L L++K +     +K +L+KAL+PP   ++  A++ L E GA++ D      LT LG HLA+LP+D+ + K+++ G IFGCL P+L++++ +S K  F  P ++++   +A+
Sbjct: 1152 SRYVDEKKMAAQQTPEMRRVPLESLFLEVKSMREDEDVKEYLNKALDPPSLASMDAALTNLIEAGALQSDRGYKSRLTSLGKHLAQLPLDLRLAKLLIMGTIFGCLGPMLTVASIMSCKPLFNTPFEKREEASKAR 1287          
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX9_BOVIN (ATP-dependent RNA helicase A OS=Bos taurus GN=DHX9 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.141e-20
Identity = 56/118 (47.46%), Postives = 75/118 (63.56%), Query Frame = 3
Query:    3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFI 356
            +R R+E+L   +  PEM R PL E+ L IKLL LG I  FL+KA+EPP  +A+  A   L E+ A++ ++ELTPLG  LAKLP++   GKMM+ G IF     I +ISA   +  PFI
Sbjct:  775 SRARFERL-ETHMTPEMFRTPLHEIALSIKLLRLGGIGQFLAKAIEPPPLDAVIEAEHTLRELDALDANDELTPLGRILAKLPIEPRFGKMMIMGCIFYVGDAICTISAATCFPEPFI 891          
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: YTDC2_PONAB (YTH domain-containing protein 2 OS=Pongo abelii GN=YTHDC2 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.491e-20
Identity = 52/119 (43.70%), Postives = 73/119 (61.34%), Query Frame = 3
Query:   27 MRPYQVPEMQRMPLVELCLQIKLLSLGRIKI--FLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQ 377
            M  +Q PE+ RMPL ELCL  KLL+     +  FL KA EPP    +  A+ +L  + A++  E+LT LG+HLA LPV+  +GKM+L   +  CL PIL+I+  L+Y+ PF+ P    Q
Sbjct:    1 MLEFQTPELLRMPLQELCLHTKLLAPVNCPVADFLMKAPEPPPALIVRNAVQMLKTIDAMDTWEDLTELGYHLADLPVEPHLGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQ 119          
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX9_PONAB (ATP-dependent RNA helicase A OS=Pongo abelii GN=DHX9 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.542e-20
Identity = 55/118 (46.61%), Postives = 75/118 (63.56%), Query Frame = 3
Query:    3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFI 356
            +R R+E+L   +  PEM R PL E+ L IKLL LG I  FL+KA+EPP  +A+  A   L E+ A++ ++ELTPLG  LAKLP++   GKMM+ G IF     I +I+A   +  PFI
Sbjct:  778 SRARFERL-ETHMTPEMFRTPLHEIALSIKLLRLGGIGQFLAKAIEPPPLDAVIEAEHTLRELDALDANDELTPLGRILAKLPIEPRFGKMMIMGCIFYVGDAICTIAAATCFPEPFI 894          
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX9_MOUSE (ATP-dependent RNA helicase A OS=Mus musculus GN=Dhx9 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 2.542e-20
Identity = 55/118 (46.61%), Postives = 75/118 (63.56%), Query Frame = 3
Query:    3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFI 356
            +R R+++L   +  PEM R PL E+ L IKLL LG I  FL+KA+EPP  +AI  A   L E+ A++ ++ELTPLG  LAKLP++   GKMM+ G IF     + +ISA   +  PFI
Sbjct:  780 SRARFDRL-ETHMTPEMFRTPLHEIALSIKLLRLGGIGQFLAKAIEPPPLDAIIEAEHTLRELDALDANDELTPLGRILAKLPIEPRFGKMMIMGCIFYVGDAVCTISAATCFPEPFI 896          
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX9_HUMAN (ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4)

HSP 1 Score: 97.8265 bits (242), Expect = 2.542e-20
Identity = 55/118 (46.61%), Postives = 75/118 (63.56%), Query Frame = 3
Query:    3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFI 356
            +R R+E+L   +  PEM R PL E+ L IKLL LG I  FL+KA+EPP  +A+  A   L E+ A++ ++ELTPLG  LAKLP++   GKMM+ G IF     I +I+A   +  PFI
Sbjct:  778 SRARFERL-ETHMTPEMFRTPLHEIALSIKLLRLGGIGQFLAKAIEPPPLDAVIEAEHTLRELDALDANDELTPLGRILAKLPIEPRFGKMMIMGCIFYVGDAICTIAAATCFPEPFI 894          
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX34_HUMAN (Probable ATP-dependent RNA helicase DHX34 OS=Homo sapiens GN=DHX34 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.321e-20
Identity = 50/107 (46.73%), Postives = 74/107 (69.16%), Query Frame = 3
Query:   33 PYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPF 353
            PY VPE++R+ L  L LQ+K +S+G  + F    +EPP   ++ TAI  L + GA++  E LTP+G  LA+LPVDV+IGKM++ G +F  + P+L+I+A LS +SPF
Sbjct:  429 PYPVPEIRRVALDSLVLQMKSMSVGDPRTF--PFIEPPPPASLETAILYLRDQGALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALSVQSPF 533          
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX9_XENLA (ATP-dependent RNA helicase A-like protein OS=Xenopus laevis GN=dhx9 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 7.398e-20
Identity = 54/118 (45.76%), Postives = 76/118 (64.41%), Query Frame = 3
Query:    3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFI 356
            ++ R++KL   +  PE+ R PL E+ L IKLL LG I  FLSKA+EPP  +A+  A   L E+ A++ ++ELTPLG  LAKLP++  +GKMM+ G IF     + +ISA   +  PFI
Sbjct:  780 SKARFDKL-ETHLTPEIFRTPLHEVALSIKLLRLGGIGHFLSKAIEPPPLDAVIEAEHTLRELDALDSNDELTPLGRILAKLPIEPRLGKMMIIGCIFYVGDALCTISAATCFPEPFI 896          
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: MLE_DROME (Dosage compensation regulator OS=Drosophila melanogaster GN=mle PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.648e-19
Identity = 52/103 (50.49%), Postives = 71/103 (68.93%), Query Frame = 3
Query:   45 PEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPF 353
            PEM R PL E+ L IKLL LG I  FLSKALEPP  +A+  A  +L E+  ++ ++ELTPLG  LA+LP++  +GKMM+ G +FGC + +++I A  SY S F
Sbjct:  795 PEMFRTPLHEMALTIKLLRLGSIHHFLSKALEPPPVDAVIEAEVLLREMRCLDANDELTPLGRLLARLPIEPRLGKMMVLGAVFGC-ADLMAIMA--SYSSTF 894          
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: YG65_SCHPO (Uncharacterized helicase C15C4.05 OS=Schizosaccharomyces pombe GN=SPBC15C4.05 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.068e-18
Identity = 46/133 (34.59%), Postives = 81/133 (60.90%), Query Frame = 3
Query:    3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLA 401
            ++ +++     YQ PE+ R+ L E+ L++K+  +G ++  L KAL+PP    I  A+  L++VGA+  +E+LT LG  L++LPVD  +GK+++ G  + C+    SI A L+  SPF    D + +  +A+L+
Sbjct: 1032 SKFKHDTQFLSYQTPEILRLNLQEVVLRVKMCQMGDVQDVLGKALDPPSSTNIIRALEKLHQVGALSENEKLTKLGKFLSQLPVDANLGKILVLGCFYKCVDAASSIVAMLTIGSPFRKSVDNEFSANKARLS 1164          
The following BLAST results are available for this feature:
BLAST of CB250339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
YUM14_USTMA1.141e-2037.50Putative DEAH-box ATP-dependent helicase UM11114 O... [more]
DHX9_BOVIN1.141e-2047.46ATP-dependent RNA helicase A OS=Bos taurus GN=DHX9... [more]
YTDC2_PONAB1.491e-2043.70YTH domain-containing protein 2 OS=Pongo abelii GN... [more]
DHX9_PONAB2.542e-2046.61ATP-dependent RNA helicase A OS=Pongo abelii GN=DH... [more]
DHX9_MOUSE2.542e-2046.61ATP-dependent RNA helicase A OS=Mus musculus GN=Dh... [more]
DHX9_HUMAN2.542e-2046.61ATP-dependent RNA helicase A OS=Homo sapiens GN=DH... [more]
DHX34_HUMAN3.321e-2046.73Probable ATP-dependent RNA helicase DHX34 OS=Homo ... [more]
DHX9_XENLA7.398e-2045.76ATP-dependent RNA helicase A-like protein OS=Xenop... [more]
MLE_DROME1.648e-1950.49Dosage compensation regulator OS=Drosophila melano... [more]
YG65_SCHPO1.068e-1834.59Uncharacterized helicase C15C4.05 OS=Schizosacchar... [more]

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Properties
Property NameValue
Genbank descriptionEST0128 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ191 similar to hypothetical Arabidopsis protein (acc# NP_176103), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250339 ID=CB250339; Name=CB250339; organism=Citrus sinensis; type=EST; length=478bp
GCACACGTCATAGGTATGAAAAGCTCATGCGTCCTTATCAGGTTCCTGAG
ATGCAGCGGATGCCTCTGGTTGAGTTGTGTTTACAAATTAAGTTACTTTC
TCTAGGACGCATAAAGATATTTCTATCCAAGGCGTTAGAACCTCCTAAGG
AAGAAGCTATTACTACTGCAATTTCAGTATTGTATGAGGTTGGTGCTATT
GAAGGGGATGAGGAATTGACCCCTCTTGGCCATCATTTGGCCAAACTTCC
TGTCGATGTATTGATTGGAAAGATGATGCTCTTTGGTGGAATATTTGGTT
GCTTATCTCCCATTCTCTCTATATCAGCTTTTCTTAGCTACAAATCACCA
TTTATTTATCCCAAGGATGAGAAGCAAAATGTTGAAAGAGCTAAATTGGC
TCTATTAACTGATAAGCTAGAGGGATTAAGTGATTCAAATGACAGTTCAA
CGCAATCTGACCATCTGGTATTGATGGT
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