CB250339
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: UCP12_SCHPO (Putative ATP-dependent RNA helicase ucp12 OS=Schizosaccharomyces pombe GN=ucp12 PE=2 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 3.108e-18 Identity = 50/129 (38.76%), Postives = 75/129 (58.14%), Query Frame = 3 Query: 3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLL-----------SLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFI 356 TR EK M PE+ R L ++CL + L + G IK F++ ++PP + + A+ L +VGA+ E+LT LG +L LP+D+ +GK+++FG IFG L P L+I+A LS KSPF+ Sbjct: 936 TRGFEEKGMLGQTPPEVLRTALSQVCLNVVPLVKRFSSAGNSVNQGSIKKFMNSLIDPPNDATVDLALKKLIQVGALTVSEDLTGLGEYLVSLPIDLKLGKLLVFGSIFGYLEPALTITAILSTKSPFL 1064
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX30_BOVIN (Putative ATP-dependent RNA helicase DHX30 OS=Bos taurus GN=DHX30 PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 1.105e-15 Identity = 56/158 (35.44%), Postives = 84/158 (53.16%), Query Frame = 3 Query: 6 RHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKI-FLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLALLTDKLEGLSDSNDSSTQSDHLVLM 476 R R EK M P+QVPE+ R PL L LQ K+ + + FLSKA++ P +A+ A+ +L E+G ++ E LT LG LA + D + K ++ IF CL P+L + + L+ + PF + V++ K L S+DS SDHL + Sbjct: 823 RSRLEK-MAPFQVPEILRTPLENLVLQAKIHMPEKTAVEFLSKAVDSPNIKAVDEAVILLQEIGVLDQREYLTTLGQRLAHISTDPRLAKAIVLAAIFRCLHPLLVVVSCLT-RDPFSSSLQNRAEVDKVKALL----------SHDSG--SDHLAFV 966
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX9_CAEEL (Probable ATP-dependent RNA helicase A OS=Caenorhabditis elegans GN=rha-1 PE=2 SV=3) HSP 1 Score: 82.0333 bits (201), Expect = 1.444e-15 Identity = 48/158 (30.38%), Postives = 90/158 (56.96%), Query Frame = 3 Query: 3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLALLTDKLEGLSDSNDSSTQSDHLVLM 476 ++ R+E L + EM R+PL ++ L IKLL LG + FL KAL+PP + + + +VL +GA++ + ELT LG LA++P++ +I K+++ G G S + +++ +S+ +PF+ P+++ + +L G + SDH+ ++ Sbjct: 787 SKMRFEAL-DDHGTAEMLRIPLHQIALTIKLLRLGSVGEFLGKALQPPPYDMVVESEAVLQAMGALDRNLELTSLGKMLARMPIEPVIAKVLILGTALGAGSVMCDVASAMSFPTPFV-PREKHHS-----------RLSGTQRKFAGNKFSDHVAIV 931
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX30_RAT (Putative ATP-dependent RNA helicase DHX30 OS=Rattus norvegicus GN=Dhx30 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.444e-15 Identity = 55/158 (34.81%), Postives = 85/158 (53.80%), Query Frame = 3 Query: 6 RHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKI-FLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLALLTDKLEGLSDSNDSSTQSDHLVLM 476 R R EK++ P+QVPE+ R PL L LQ K+ + + FLSKA++ P +A+ A+ +L E+G ++ E LT LG LA + D + K ++ IF CL P+L + + L+ + PF + V++ K L S+DS SDHL + Sbjct: 797 RSRLEKMV-PFQVPEILRTPLENLVLQAKIHMPEKTAVEFLSKAVDSPNIKAVDEAVILLQEIGVLDQREYLTTLGQRLAHISTDPRLAKAIVLAAIFRCLHPLLVVVSCLT-RDPFSSSLQNRAEVDKVKALL----------SHDSG--SDHLAFV 940
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX30_MOUSE (Putative ATP-dependent RNA helicase DHX30 OS=Mus musculus GN=Dhx30 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.444e-15 Identity = 55/158 (34.81%), Postives = 85/158 (53.80%), Query Frame = 3 Query: 6 RHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKI-FLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLALLTDKLEGLSDSNDSSTQSDHLVLM 476 R R EK++ P+QVPE+ R PL L LQ K+ + + FLSKA++ P +A+ A+ +L E+G ++ E LT LG LA + D + K ++ IF CL P+L + + L+ + PF + V++ K L S+DS SDHL + Sbjct: 820 RSRLEKMV-PFQVPEILRTPLENLVLQAKIHMPEKTAVEFLSKAVDSPNIKAVDEAVILLQEIGVLDQREYLTTLGQRLAHISTDPRLAKAIVLAAIFRCLHPLLVVVSCLT-RDPFSSSLQNRAEVDKVKALL----------SHDSG--SDHLAFV 963
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX30_HUMAN (Putative ATP-dependent RNA helicase DHX30 OS=Homo sapiens GN=DHX30 PE=1 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.444e-15 Identity = 55/158 (34.81%), Postives = 85/158 (53.80%), Query Frame = 3 Query: 6 RHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKI-FLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLALLTDKLEGLSDSNDSSTQSDHLVLM 476 R R EK++ P+QVPE+ R PL L LQ K+ + + FLSKA++ P +A+ A+ +L E+G ++ E LT LG LA + D + K ++ IF CL P+L + + L+ + PF + V++ K L S+DS SDHL + Sbjct: 797 RSRLEKMV-PFQVPEILRTPLENLVLQAKIHMPEKTAVEFLSKAVDSPNIKAVDEAVILLQEIGVLDQREYLTTLGQRLAHISTDPRLAKAIVLAAIFRCLHPLLVVVSCLT-RDPFSSSLQNRAEVDKVKALL----------SHDSG--SDHLAFV 940
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: TDRD9_RAT (Putative ATP-dependent RNA helicase TDRD9 OS=Rattus norvegicus GN=Tdrd9 PE=2 SV=2) HSP 1 Score: 81.6481 bits (200), Expect = 1.886e-15 Identity = 51/129 (39.53%), Postives = 70/129 (54.26%), Query Frame = 3 Query: 6 RHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIE----------GDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYP 362 R ++ + + VPEM R PL L++KLL +G + L+ AL PP I I +L EVGA+ D ELT LG LA+LPV +GK+++ G +FGCL L I+A LS K+ F P Sbjct: 357 RDFWDSAIPDHVVPEMLRCPLGSTVLKVKLLDMGEPRALLATALSPPSLSDIERTILLLKEVGALAVSGQREDENPHDGELTFLGRVLAQLPVSQQLGKLIVLGHVFGCLDECLIIAAALSLKNFFTMP 485
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: TDRD9_MOUSE (Putative ATP-dependent RNA helicase TDRD9 OS=Mus musculus GN=Tdrd9 PE=1 SV=2) HSP 1 Score: 81.6481 bits (200), Expect = 1.886e-15 Identity = 51/129 (39.53%), Postives = 70/129 (54.26%), Query Frame = 3 Query: 6 RHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIE----------GDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYP 362 R ++ + + VPEM R PL L++KLL +G + L+ AL PP I I +L EVGA+ D ELT LG LA+LPV +GK+++ G +FGCL L I+A LS K+ F P Sbjct: 356 RDFWDSAIPDHVVPEMLRCPLGSTILKVKLLDMGEPRALLATALSPPSLSDIERTILLLKEVGALAVSGQREDENPHDGELTFLGRVLAQLPVSQQLGKLVVLGHVFGCLDECLIIAAALSLKNFFTMP 484
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: TDRD9_HUMAN (Putative ATP-dependent RNA helicase TDRD9 OS=Homo sapiens GN=TDRD9 PE=2 SV=2) HSP 1 Score: 80.4925 bits (197), Expect = 4.201e-15 Identity = 50/117 (42.74%), Postives = 66/117 (56.41%), Query Frame = 3 Query: 42 VPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIE----------GDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYP 362 VPEM R PL L++KLL +G + L+ AL PP I I +L EVGA+ D ELT LG LA+LPV+ +GK+++ G +FGCL L I+A LS K+ F P Sbjct: 369 VPEMLRCPLGSTILKVKLLDMGEPRALLATALSPPGLSDIERTILLLKEVGALAVSGQREDENPHDGELTFLGRVLAQLPVNQQLGKLIVLGHVFGCLDECLIIAAALSLKNFFAMP 485
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX30_PONAB (Putative ATP-dependent RNA helicase DHX30 OS=Pongo abelii GN=DHX30 PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 4.201e-15 Identity = 54/158 (34.18%), Postives = 85/158 (53.80%), Query Frame = 3 Query: 6 RHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKI-FLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLALLTDKLEGLSDSNDSSTQSDHLVLM 476 R R EK++ P+QVPE+ R PL L LQ K+ + + FLSKA++ P +A+ A+ +L E+G ++ E LT LG LA + + + K ++ IF CL P+L + + L+ + PF + V++ K L S+DS SDHL + Sbjct: 797 RSRLEKMV-PFQVPEILRTPLENLVLQAKIHMPEKTAVEFLSKAVDSPNIKAVDEAVILLQEIGVLDQREYLTTLGQRLAHISTEPRLAKAIVLAAIFRCLHPLLVVVSCLT-RDPFSSSLQNRAEVDKVKALL----------SHDSG--SDHLAFV 940 The following BLAST results are available for this feature:
BLAST of CB250339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 50
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Sequences
The
following sequences are available for this feature:
EST sequence >CB250339 ID=CB250339; Name=CB250339; organism=Citrus sinensis; type=EST; length=478bpback to top |