CB250339

Overview
NameCB250339
Unique NameCB250339
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length478
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: UCP12_SCHPO (Putative ATP-dependent RNA helicase ucp12 OS=Schizosaccharomyces pombe GN=ucp12 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.108e-18
Identity = 50/129 (38.76%), Postives = 75/129 (58.14%), Query Frame = 3
Query:    3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLL-----------SLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFI 356
            TR   EK M     PE+ R  L ++CL +  L           + G IK F++  ++PP +  +  A+  L +VGA+   E+LT LG +L  LP+D+ +GK+++FG IFG L P L+I+A LS KSPF+
Sbjct:  936 TRGFEEKGMLGQTPPEVLRTALSQVCLNVVPLVKRFSSAGNSVNQGSIKKFMNSLIDPPNDATVDLALKKLIQVGALTVSEDLTGLGEYLVSLPIDLKLGKLLVFGSIFGYLEPALTITAILSTKSPFL 1064          
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX30_BOVIN (Putative ATP-dependent RNA helicase DHX30 OS=Bos taurus GN=DHX30 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.105e-15
Identity = 56/158 (35.44%), Postives = 84/158 (53.16%), Query Frame = 3
Query:    6 RHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKI-FLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLALLTDKLEGLSDSNDSSTQSDHLVLM 476
            R R EK M P+QVPE+ R PL  L LQ K+    +  + FLSKA++ P  +A+  A+ +L E+G ++  E LT LG  LA +  D  + K ++   IF CL P+L + + L+ + PF      +  V++ K  L          S+DS   SDHL  +
Sbjct:  823 RSRLEK-MAPFQVPEILRTPLENLVLQAKIHMPEKTAVEFLSKAVDSPNIKAVDEAVILLQEIGVLDQREYLTTLGQRLAHISTDPRLAKAIVLAAIFRCLHPLLVVVSCLT-RDPFSSSLQNRAEVDKVKALL----------SHDSG--SDHLAFV 966          
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX9_CAEEL (Probable ATP-dependent RNA helicase A OS=Caenorhabditis elegans GN=rha-1 PE=2 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 1.444e-15
Identity = 48/158 (30.38%), Postives = 90/158 (56.96%), Query Frame = 3
Query:    3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLALLTDKLEGLSDSNDSSTQSDHLVLM 476
            ++ R+E L   +   EM R+PL ++ L IKLL LG +  FL KAL+PP  + +  + +VL  +GA++ + ELT LG  LA++P++ +I K+++ G   G  S +  +++ +S+ +PF+ P+++  +           +L G       +  SDH+ ++
Sbjct:  787 SKMRFEAL-DDHGTAEMLRIPLHQIALTIKLLRLGSVGEFLGKALQPPPYDMVVESEAVLQAMGALDRNLELTSLGKMLARMPIEPVIAKVLILGTALGAGSVMCDVASAMSFPTPFV-PREKHHS-----------RLSGTQRKFAGNKFSDHVAIV 931          
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX30_RAT (Putative ATP-dependent RNA helicase DHX30 OS=Rattus norvegicus GN=Dhx30 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.444e-15
Identity = 55/158 (34.81%), Postives = 85/158 (53.80%), Query Frame = 3
Query:    6 RHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKI-FLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLALLTDKLEGLSDSNDSSTQSDHLVLM 476
            R R EK++ P+QVPE+ R PL  L LQ K+    +  + FLSKA++ P  +A+  A+ +L E+G ++  E LT LG  LA +  D  + K ++   IF CL P+L + + L+ + PF      +  V++ K  L          S+DS   SDHL  +
Sbjct:  797 RSRLEKMV-PFQVPEILRTPLENLVLQAKIHMPEKTAVEFLSKAVDSPNIKAVDEAVILLQEIGVLDQREYLTTLGQRLAHISTDPRLAKAIVLAAIFRCLHPLLVVVSCLT-RDPFSSSLQNRAEVDKVKALL----------SHDSG--SDHLAFV 940          
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX30_MOUSE (Putative ATP-dependent RNA helicase DHX30 OS=Mus musculus GN=Dhx30 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.444e-15
Identity = 55/158 (34.81%), Postives = 85/158 (53.80%), Query Frame = 3
Query:    6 RHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKI-FLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLALLTDKLEGLSDSNDSSTQSDHLVLM 476
            R R EK++ P+QVPE+ R PL  L LQ K+    +  + FLSKA++ P  +A+  A+ +L E+G ++  E LT LG  LA +  D  + K ++   IF CL P+L + + L+ + PF      +  V++ K  L          S+DS   SDHL  +
Sbjct:  820 RSRLEKMV-PFQVPEILRTPLENLVLQAKIHMPEKTAVEFLSKAVDSPNIKAVDEAVILLQEIGVLDQREYLTTLGQRLAHISTDPRLAKAIVLAAIFRCLHPLLVVVSCLT-RDPFSSSLQNRAEVDKVKALL----------SHDSG--SDHLAFV 963          
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX30_HUMAN (Putative ATP-dependent RNA helicase DHX30 OS=Homo sapiens GN=DHX30 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.444e-15
Identity = 55/158 (34.81%), Postives = 85/158 (53.80%), Query Frame = 3
Query:    6 RHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKI-FLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLALLTDKLEGLSDSNDSSTQSDHLVLM 476
            R R EK++ P+QVPE+ R PL  L LQ K+    +  + FLSKA++ P  +A+  A+ +L E+G ++  E LT LG  LA +  D  + K ++   IF CL P+L + + L+ + PF      +  V++ K  L          S+DS   SDHL  +
Sbjct:  797 RSRLEKMV-PFQVPEILRTPLENLVLQAKIHMPEKTAVEFLSKAVDSPNIKAVDEAVILLQEIGVLDQREYLTTLGQRLAHISTDPRLAKAIVLAAIFRCLHPLLVVVSCLT-RDPFSSSLQNRAEVDKVKALL----------SHDSG--SDHLAFV 940          
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: TDRD9_RAT (Putative ATP-dependent RNA helicase TDRD9 OS=Rattus norvegicus GN=Tdrd9 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.886e-15
Identity = 51/129 (39.53%), Postives = 70/129 (54.26%), Query Frame = 3
Query:    6 RHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIE----------GDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYP 362
            R  ++  +  + VPEM R PL    L++KLL +G  +  L+ AL PP    I   I +L EVGA+            D ELT LG  LA+LPV   +GK+++ G +FGCL   L I+A LS K+ F  P
Sbjct:  357 RDFWDSAIPDHVVPEMLRCPLGSTVLKVKLLDMGEPRALLATALSPPSLSDIERTILLLKEVGALAVSGQREDENPHDGELTFLGRVLAQLPVSQQLGKLIVLGHVFGCLDECLIIAAALSLKNFFTMP 485          
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: TDRD9_MOUSE (Putative ATP-dependent RNA helicase TDRD9 OS=Mus musculus GN=Tdrd9 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.886e-15
Identity = 51/129 (39.53%), Postives = 70/129 (54.26%), Query Frame = 3
Query:    6 RHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIE----------GDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYP 362
            R  ++  +  + VPEM R PL    L++KLL +G  +  L+ AL PP    I   I +L EVGA+            D ELT LG  LA+LPV   +GK+++ G +FGCL   L I+A LS K+ F  P
Sbjct:  356 RDFWDSAIPDHVVPEMLRCPLGSTILKVKLLDMGEPRALLATALSPPSLSDIERTILLLKEVGALAVSGQREDENPHDGELTFLGRVLAQLPVSQQLGKLVVLGHVFGCLDECLIIAAALSLKNFFTMP 484          
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: TDRD9_HUMAN (Putative ATP-dependent RNA helicase TDRD9 OS=Homo sapiens GN=TDRD9 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 4.201e-15
Identity = 50/117 (42.74%), Postives = 66/117 (56.41%), Query Frame = 3
Query:   42 VPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIE----------GDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYP 362
            VPEM R PL    L++KLL +G  +  L+ AL PP    I   I +L EVGA+            D ELT LG  LA+LPV+  +GK+++ G +FGCL   L I+A LS K+ F  P
Sbjct:  369 VPEMLRCPLGSTILKVKLLDMGEPRALLATALSPPGLSDIERTILLLKEVGALAVSGQREDENPHDGELTFLGRVLAQLPVNQQLGKLIVLGHVFGCLDECLIIAAALSLKNFFAMP 485          
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX30_PONAB (Putative ATP-dependent RNA helicase DHX30 OS=Pongo abelii GN=DHX30 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.201e-15
Identity = 54/158 (34.18%), Postives = 85/158 (53.80%), Query Frame = 3
Query:    6 RHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKI-FLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLALLTDKLEGLSDSNDSSTQSDHLVLM 476
            R R EK++ P+QVPE+ R PL  L LQ K+    +  + FLSKA++ P  +A+  A+ +L E+G ++  E LT LG  LA +  +  + K ++   IF CL P+L + + L+ + PF      +  V++ K  L          S+DS   SDHL  +
Sbjct:  797 RSRLEKMV-PFQVPEILRTPLENLVLQAKIHMPEKTAVEFLSKAVDSPNIKAVDEAVILLQEIGVLDQREYLTTLGQRLAHISTEPRLAKAIVLAAIFRCLHPLLVVVSCLT-RDPFSSSLQNRAEVDKVKALL----------SHDSG--SDHLAFV 940          
The following BLAST results are available for this feature:
BLAST of CB250339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
UCP12_SCHPO3.108e-1838.76Putative ATP-dependent RNA helicase ucp12 OS=Schiz... [more]
DHX30_BOVIN1.105e-1535.44Putative ATP-dependent RNA helicase DHX30 OS=Bos t... [more]
DHX9_CAEEL1.444e-1530.38Probable ATP-dependent RNA helicase A OS=Caenorhab... [more]
DHX30_RAT1.444e-1534.81Putative ATP-dependent RNA helicase DHX30 OS=Rattu... [more]
DHX30_MOUSE1.444e-1534.81Putative ATP-dependent RNA helicase DHX30 OS=Mus m... [more]
DHX30_HUMAN1.444e-1534.81Putative ATP-dependent RNA helicase DHX30 OS=Homo ... [more]
TDRD9_RAT1.886e-1539.53Putative ATP-dependent RNA helicase TDRD9 OS=Rattu... [more]
TDRD9_MOUSE1.886e-1539.53Putative ATP-dependent RNA helicase TDRD9 OS=Mus m... [more]
TDRD9_HUMAN4.201e-1542.74Putative ATP-dependent RNA helicase TDRD9 OS=Homo ... [more]
DHX30_PONAB4.201e-1534.18Putative ATP-dependent RNA helicase DHX30 OS=Pongo... [more]

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Properties
Property NameValue
Genbank descriptionEST0128 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ191 similar to hypothetical Arabidopsis protein (acc# NP_176103), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250339 ID=CB250339; Name=CB250339; organism=Citrus sinensis; type=EST; length=478bp
GCACACGTCATAGGTATGAAAAGCTCATGCGTCCTTATCAGGTTCCTGAG
ATGCAGCGGATGCCTCTGGTTGAGTTGTGTTTACAAATTAAGTTACTTTC
TCTAGGACGCATAAAGATATTTCTATCCAAGGCGTTAGAACCTCCTAAGG
AAGAAGCTATTACTACTGCAATTTCAGTATTGTATGAGGTTGGTGCTATT
GAAGGGGATGAGGAATTGACCCCTCTTGGCCATCATTTGGCCAAACTTCC
TGTCGATGTATTGATTGGAAAGATGATGCTCTTTGGTGGAATATTTGGTT
GCTTATCTCCCATTCTCTCTATATCAGCTTTTCTTAGCTACAAATCACCA
TTTATTTATCCCAAGGATGAGAAGCAAAATGTTGAAAGAGCTAAATTGGC
TCTATTAACTGATAAGCTAGAGGGATTAAGTGATTCAAATGACAGTTCAA
CGCAATCTGACCATCTGGTATTGATGGT
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