CB250339
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX35_HUMAN (Probable ATP-dependent RNA helicase DHX35 OS=Homo sapiens GN=DHX35 PE=1 SV=2) HSP 1 Score: 79.7221 bits (195), Expect = 7.165e-15 Identity = 45/130 (34.62%), Postives = 75/130 (57.69%), Query Frame = 3 Query: 3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELT-PLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVER 389 T ++KL + VPEMQR L + LQ+K L + + F + PP +++ A+ +LY +G ++ D LT PLG +A+ P++ + KM+L G FGC ILSI+A + ++ F+ P ++K + R Sbjct: 407 TEEAFDKLPQS-TVPEMQRSNLAPVILQLKALGIDNVLRF--HFMSPPPAQSMVQALELLYALGGLDKDCRLTEPLGMRIAEFPLNPMFAKMLLESGNFGCSQEILSIAAMMQIQNIFVVPPNQKSHAIR 533
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX35_PONAB (Probable ATP-dependent RNA helicase DHX35 OS=Pongo abelii GN=DHX35 PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 9.358e-15 Identity = 45/130 (34.62%), Postives = 74/130 (56.92%), Query Frame = 3 Query: 3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELT-PLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVER 389 T ++KL + VPEMQR L + LQ+K L + + F + PP +++ A+ +LY +G ++ D LT PLG +A+ P++ + KM+L G FGC ILSI+A + ++ F+ P ++K R Sbjct: 407 TEEAFDKLPQS-TVPEMQRSNLAPVILQLKALGIDNVLRF--HFMSPPPAQSMVQALELLYALGGLDKDCRLTEPLGMRIAEFPLNPMFAKMLLESGNFGCSQEILSIAAMMQIQNIFVVPPNQKSQAIR 533
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX30_CHICK (Putative ATP-dependent RNA helicase DHX30 OS=Gallus gallus GN=DHX30 PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 9.358e-15 Identity = 49/134 (36.57%), Postives = 76/134 (56.72%), Query Frame = 3 Query: 6 RHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKI-FLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLAL 404 R R +K M YQVPE+ R PL L +Q K+ + + FLSKAL+ P +A+ A+ +L E+G ++ E LT LG LA++ D + K ++ I+ CL P+L I + L+ + PF + V++AK L Sbjct: 840 RSRLDK-MPTYQVPEILRTPLENLVVQAKIHMPEKTAVEFLSKALDSPDIKAVDEAVILLQEIGVLDQREALTTLGKRLAQISTDPRLAKAIVLASIYRCLHPLLVIVSCLT-RDPFSSSLQNRAEVDKAKAVL 971
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: MOG5_CAEEL (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5 OS=Caenorhabditis elegans GN=mog-5 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 8.759e-13 Identity = 37/131 (28.24%), Postives = 73/131 (55.73%), Query Frame = 3 Query: 3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAK 395 T + M P VPE+QR L LQ+K + + + F ++ P +++ TA++ L+ + A++GD LT LG +A+ P++ + K+++ GC +L+I A L+ ++ F PK+++ + ++ K Sbjct: 879 TERAFRDEMLPTPVPEIQRTNLASTLLQLKAMGINNLIDF--DFMDAPPLDSMITALNTLHTLSALDGDGLLTKLGRRMAEFPLEPSLSKLLIMSVDLGCSEEVLTIVAMLNVQNIFYRPKEKQDHADQKK 1007
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX16_PANTR (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Pan troglodytes GN=DHX16 PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.494e-12 Identity = 44/133 (33.08%), Postives = 71/133 (53.38%), Query Frame = 3 Query: 3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIY-PKDEKQNVERAKL 398 T Y+ + VPE+QR L + L +K L + + F L+PP E + A+ LY +GA+ ELT G +A+LPVD ++ KM+L + C IL+++A LS + Y PKD+ + + A++ Sbjct: 742 TAWAYQHELEETTVPEIQRTSLGNVVLLLKSLGIHDLMHF--DFLDPPPYETLLLALEQLYALGALNHLGELTTSGRKMAELPVDPMLSKMILASEKYSCSEEILTVAAMLSVNNSIFYRPKDKVVHADNARV 872
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX16_HUMAN (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Homo sapiens GN=DHX16 PE=1 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 1.494e-12 Identity = 44/133 (33.08%), Postives = 71/133 (53.38%), Query Frame = 3 Query: 3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIY-PKDEKQNVERAKL 398 T Y+ + VPE+QR L + L +K L + + F L+PP E + A+ LY +GA+ ELT G +A+LPVD ++ KM+L + C IL+++A LS + Y PKD+ + + A++ Sbjct: 739 TAWAYQHELEETTVPEIQRTSLGNVVLLLKSLGIHDLMHF--DFLDPPPYETLLLALEQLYALGALNHLGELTTSGRKMAELPVDPMLSKMILASEKYSCSEEILTVAAMLSVNNSIFYRPKDKVVHADNARV 869
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: CDC28_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein cdc28 OS=Schizosaccharomyces pombe GN=cdc28 PE=2 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 1.494e-12 Identity = 44/159 (27.67%), Postives = 75/159 (47.17%), Query Frame = 3 Query: 3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIY-PKDEKQNVERAKLALLTDKLEGLSDSNDSSTQSDHLVLM 476 TR Y + PE+QR L + L +K L + + F ++ P E + ++ +LY +GA+ ELT LG +A+ P D ++ K ++ +GC+ +LSI + L S Y PKD+ ++A+ +N + DHL L+ Sbjct: 758 TRRTYNNELDMVTSPEIQRTNLTNIVLLLKSLGINNLLDF--DFMDAPPPETLMRSLELLYALGALNNRGELTKLGRQMAEFPTDPMLSKSLIASSKYGCVEEVLSIVSMLGEASSLFYRPKDKIMEADKAR-------------ANFTQPGGDHLTLL 901
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX8_MOUSE (ATP-dependent RNA helicase DHX8 OS=Mus musculus GN=Dhx8 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.951e-12 Identity = 44/158 (27.85%), Postives = 77/158 (48.73%), Query Frame = 3 Query: 3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLALLTDKLEGLSDSNDSSTQSDHLVLM 476 T Y M VPE+QR L L +K + + + F ++ P E + TA+ LY +GA++ + LT LG +A+ P++ ++ KM++ GC +L+I + LS ++ F PKD++ ++ K + T+ DHL L+ Sbjct: 928 TERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSF--DFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALADQKK-------------AKFHQTEGDHLTLL 1070
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX8_HUMAN (ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.951e-12 Identity = 44/158 (27.85%), Postives = 77/158 (48.73%), Query Frame = 3 Query: 3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLALLTDKLEGLSDSNDSSTQSDHLVLM 476 T Y M VPE+QR L L +K + + + F ++ P E + TA+ LY +GA++ + LT LG +A+ P++ ++ KM++ GC +L+I + LS ++ F PKD++ ++ K + T+ DHL L+ Sbjct: 904 TERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSF--DFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALADQKK-------------AKFHQTEGDHLTLL 1046
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX15_DICDI (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase dhx15 OS=Dictyostelium discoideum GN=dhx15 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 2.548e-12 Identity = 40/131 (30.53%), Postives = 73/131 (55.73%), Query Frame = 3 Query: 3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAK 395 T +++LM PE+ R L + LQ LL LG + + ++PP + + A+ VL+ +GA++ + +LT +G +++ P+D + KM++ C + IL+I+A LS + F+ PKD + + AK Sbjct: 413 TEKAFKELMIQQTHPEILRSNLASVVLQ--LLKLGVVDLVHFDFMDPPVPDTLIRALEVLHYLGALDDEGQLTEIGSIMSEFPLDPQLSKMLIVSAERSCSNEILTIAAMLSAPNCFMRPKDNRIEADSAK 541 The following BLAST results are available for this feature:
BLAST of CB250339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 50
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Sequences
The
following sequences are available for this feature:
EST sequence >CB250339 ID=CB250339; Name=CB250339; organism=Citrus sinensis; type=EST; length=478bpback to top |