CB250339

Overview
NameCB250339
Unique NameCB250339
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length478
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX35_HUMAN (Probable ATP-dependent RNA helicase DHX35 OS=Homo sapiens GN=DHX35 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 7.165e-15
Identity = 45/130 (34.62%), Postives = 75/130 (57.69%), Query Frame = 3
Query:    3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELT-PLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVER 389
            T   ++KL +   VPEMQR  L  + LQ+K L +  +  F    + PP  +++  A+ +LY +G ++ D  LT PLG  +A+ P++ +  KM+L  G FGC   ILSI+A +  ++ F+ P ++K +  R
Sbjct:  407 TEEAFDKLPQS-TVPEMQRSNLAPVILQLKALGIDNVLRF--HFMSPPPAQSMVQALELLYALGGLDKDCRLTEPLGMRIAEFPLNPMFAKMLLESGNFGCSQEILSIAAMMQIQNIFVVPPNQKSHAIR 533          
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX35_PONAB (Probable ATP-dependent RNA helicase DHX35 OS=Pongo abelii GN=DHX35 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.358e-15
Identity = 45/130 (34.62%), Postives = 74/130 (56.92%), Query Frame = 3
Query:    3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELT-PLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVER 389
            T   ++KL +   VPEMQR  L  + LQ+K L +  +  F    + PP  +++  A+ +LY +G ++ D  LT PLG  +A+ P++ +  KM+L  G FGC   ILSI+A +  ++ F+ P ++K    R
Sbjct:  407 TEEAFDKLPQS-TVPEMQRSNLAPVILQLKALGIDNVLRF--HFMSPPPAQSMVQALELLYALGGLDKDCRLTEPLGMRIAEFPLNPMFAKMLLESGNFGCSQEILSIAAMMQIQNIFVVPPNQKSQAIR 533          
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX30_CHICK (Putative ATP-dependent RNA helicase DHX30 OS=Gallus gallus GN=DHX30 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.358e-15
Identity = 49/134 (36.57%), Postives = 76/134 (56.72%), Query Frame = 3
Query:    6 RHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKI-FLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLAL 404
            R R +K M  YQVPE+ R PL  L +Q K+    +  + FLSKAL+ P  +A+  A+ +L E+G ++  E LT LG  LA++  D  + K ++   I+ CL P+L I + L+ + PF      +  V++AK  L
Sbjct:  840 RSRLDK-MPTYQVPEILRTPLENLVVQAKIHMPEKTAVEFLSKALDSPDIKAVDEAVILLQEIGVLDQREALTTLGKRLAQISTDPRLAKAIVLASIYRCLHPLLVIVSCLT-RDPFSSSLQNRAEVDKAKAVL 971          
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: MOG5_CAEEL (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5 OS=Caenorhabditis elegans GN=mog-5 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.759e-13
Identity = 37/131 (28.24%), Postives = 73/131 (55.73%), Query Frame = 3
Query:    3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAK 395
            T   +   M P  VPE+QR  L    LQ+K + +  +  F    ++ P  +++ TA++ L+ + A++GD  LT LG  +A+ P++  + K+++     GC   +L+I A L+ ++ F  PK+++ + ++ K
Sbjct:  879 TERAFRDEMLPTPVPEIQRTNLASTLLQLKAMGINNLIDF--DFMDAPPLDSMITALNTLHTLSALDGDGLLTKLGRRMAEFPLEPSLSKLLIMSVDLGCSEEVLTIVAMLNVQNIFYRPKEKQDHADQKK 1007          
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX16_PANTR (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Pan troglodytes GN=DHX16 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.494e-12
Identity = 44/133 (33.08%), Postives = 71/133 (53.38%), Query Frame = 3
Query:    3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIY-PKDEKQNVERAKL 398
            T   Y+  +    VPE+QR  L  + L +K L +  +  F    L+PP  E +  A+  LY +GA+    ELT  G  +A+LPVD ++ KM+L    + C   IL+++A LS  +   Y PKD+  + + A++
Sbjct:  742 TAWAYQHELEETTVPEIQRTSLGNVVLLLKSLGIHDLMHF--DFLDPPPYETLLLALEQLYALGALNHLGELTTSGRKMAELPVDPMLSKMILASEKYSCSEEILTVAAMLSVNNSIFYRPKDKVVHADNARV 872          
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX16_HUMAN (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Homo sapiens GN=DHX16 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.494e-12
Identity = 44/133 (33.08%), Postives = 71/133 (53.38%), Query Frame = 3
Query:    3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIY-PKDEKQNVERAKL 398
            T   Y+  +    VPE+QR  L  + L +K L +  +  F    L+PP  E +  A+  LY +GA+    ELT  G  +A+LPVD ++ KM+L    + C   IL+++A LS  +   Y PKD+  + + A++
Sbjct:  739 TAWAYQHELEETTVPEIQRTSLGNVVLLLKSLGIHDLMHF--DFLDPPPYETLLLALEQLYALGALNHLGELTTSGRKMAELPVDPMLSKMILASEKYSCSEEILTVAAMLSVNNSIFYRPKDKVVHADNARV 869          
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: CDC28_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein cdc28 OS=Schizosaccharomyces pombe GN=cdc28 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.494e-12
Identity = 44/159 (27.67%), Postives = 75/159 (47.17%), Query Frame = 3
Query:    3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIY-PKDEKQNVERAKLALLTDKLEGLSDSNDSSTQSDHLVLM 476
            TR  Y   +     PE+QR  L  + L +K L +  +  F    ++ P  E +  ++ +LY +GA+    ELT LG  +A+ P D ++ K ++    +GC+  +LSI + L   S   Y PKD+    ++A+             +N +    DHL L+
Sbjct:  758 TRRTYNNELDMVTSPEIQRTNLTNIVLLLKSLGINNLLDF--DFMDAPPPETLMRSLELLYALGALNNRGELTKLGRQMAEFPTDPMLSKSLIASSKYGCVEEVLSIVSMLGEASSLFYRPKDKIMEADKAR-------------ANFTQPGGDHLTLL 901          
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX8_MOUSE (ATP-dependent RNA helicase DHX8 OS=Mus musculus GN=Dhx8 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.951e-12
Identity = 44/158 (27.85%), Postives = 77/158 (48.73%), Query Frame = 3
Query:    3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLALLTDKLEGLSDSNDSSTQSDHLVLM 476
            T   Y   M    VPE+QR  L    L +K + +  +  F    ++ P  E + TA+  LY +GA++ +  LT LG  +A+ P++ ++ KM++     GC   +L+I + LS ++ F  PKD++   ++ K             +    T+ DHL L+
Sbjct:  928 TERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSF--DFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALADQKK-------------AKFHQTEGDHLTLL 1070          
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX8_HUMAN (ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.951e-12
Identity = 44/158 (27.85%), Postives = 77/158 (48.73%), Query Frame = 3
Query:    3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLALLTDKLEGLSDSNDSSTQSDHLVLM 476
            T   Y   M    VPE+QR  L    L +K + +  +  F    ++ P  E + TA+  LY +GA++ +  LT LG  +A+ P++ ++ KM++     GC   +L+I + LS ++ F  PKD++   ++ K             +    T+ DHL L+
Sbjct:  904 TERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSF--DFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALADQKK-------------AKFHQTEGDHLTLL 1046          
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX15_DICDI (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase dhx15 OS=Dictyostelium discoideum GN=dhx15 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.548e-12
Identity = 40/131 (30.53%), Postives = 73/131 (55.73%), Query Frame = 3
Query:    3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAK 395
            T   +++LM     PE+ R  L  + LQ  LL LG + +     ++PP  + +  A+ VL+ +GA++ + +LT +G  +++ P+D  + KM++      C + IL+I+A LS  + F+ PKD +   + AK
Sbjct:  413 TEKAFKELMIQQTHPEILRSNLASVVLQ--LLKLGVVDLVHFDFMDPPVPDTLIRALEVLHYLGALDDEGQLTEIGSIMSEFPLDPQLSKMLIVSAERSCSNEILTIAAMLSAPNCFMRPKDNRIEADSAK 541          
The following BLAST results are available for this feature:
BLAST of CB250339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
DHX35_HUMAN7.165e-1534.62Probable ATP-dependent RNA helicase DHX35 OS=Homo ... [more]
DHX35_PONAB9.358e-1534.62Probable ATP-dependent RNA helicase DHX35 OS=Pongo... [more]
DHX30_CHICK9.358e-1536.57Putative ATP-dependent RNA helicase DHX30 OS=Gallu... [more]
MOG5_CAEEL8.759e-1328.24Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX16_PANTR1.494e-1233.08Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX16_HUMAN1.494e-1233.08Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
CDC28_SCHPO1.494e-1227.67Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
DHX8_MOUSE1.951e-1227.85ATP-dependent RNA helicase DHX8 OS=Mus musculus GN... [more]
DHX8_HUMAN1.951e-1227.85ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN... [more]
DHX15_DICDI2.548e-1230.53Putative pre-mRNA-splicing factor ATP-dependent RN... [more]

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Properties
Property NameValue
Genbank descriptionEST0128 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ191 similar to hypothetical Arabidopsis protein (acc# NP_176103), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250339 ID=CB250339; Name=CB250339; organism=Citrus sinensis; type=EST; length=478bp
GCACACGTCATAGGTATGAAAAGCTCATGCGTCCTTATCAGGTTCCTGAG
ATGCAGCGGATGCCTCTGGTTGAGTTGTGTTTACAAATTAAGTTACTTTC
TCTAGGACGCATAAAGATATTTCTATCCAAGGCGTTAGAACCTCCTAAGG
AAGAAGCTATTACTACTGCAATTTCAGTATTGTATGAGGTTGGTGCTATT
GAAGGGGATGAGGAATTGACCCCTCTTGGCCATCATTTGGCCAAACTTCC
TGTCGATGTATTGATTGGAAAGATGATGCTCTTTGGTGGAATATTTGGTT
GCTTATCTCCCATTCTCTCTATATCAGCTTTTCTTAGCTACAAATCACCA
TTTATTTATCCCAAGGATGAGAAGCAAAATGTTGAAAGAGCTAAATTGGC
TCTATTAACTGATAAGCTAGAGGGATTAAGTGATTCAAATGACAGTTCAA
CGCAATCTGACCATCTGGTATTGATGGT
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