CB250339

Overview
NameCB250339
Unique NameCB250339
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length478
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig117 contig Csv1_Contig117:1..478. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: YL419_YEAST (Putative ATP-dependent RNA helicase YLR419W OS=Saccharomyces cerevisiae GN=YLR419W PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.328e-12
Identity = 42/132 (31.82%), Postives = 75/132 (56.82%), Query Frame = 3
Query:    3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAI-EGDEELTPLGHHLAKLPV-DVLIGKMMLFGGIFGCLS-PILSISAFLSYKSPFIYPKDEKQNVER 389
            +++ YE  M    +PE++R+PL  L L +K + +  +K FLS AL+ P   A+  A  +L  +G + E D+ LT LG  ++ +PV D   GK++++G +FGC    +L +S       PFI   + ++ +++
Sbjct:  988 SKNLYENDMISMPIPEIKRIPLESLYLSVKAMGIKDVKAFLSTALDAPPLPALQKAERILTTIGLVDESDKSLTQLGQFISLMPVMDSKHGKLLIYGILFGCTDISVLLVSILGIGVLPFIGGFENREKIKK 1119          
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: PRP22_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22 OS=Schizosaccharomyces pombe GN=prp22 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.328e-12
Identity = 42/158 (26.58%), Postives = 78/158 (49.37%), Query Frame = 3
Query:    3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLALLTDKLEGLSDSNDSSTQSDHLVLM 476
            T   Y   M P  +PE+QR  L    L +K + +  +  F    ++PP  + +  A+  LY + A++ +  LTPLG  +A  P++  + K+++     GC   +LSI A LS  + +  P++++Q  +R +             +  ++ +SDHL L+
Sbjct:  850 TESAYRNEMLPSPIPEIQRQNLSHTILMLKAMGINDLLNF--DFMDPPPAQTMIAALQNLYALSALDDEGLLTPLGRKMADFPMEPQLSKVLITSVELGCSEEMLSIIAMLSVPNIWSRPREKQQEADRQR-------------AQFANPESDHLTLL 992          
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX15_STRPU (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 (Fragment) OS=Strongylocentrotus purpuratus GN=PRP1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.347e-12
Identity = 40/132 (30.30%), Postives = 71/132 (53.79%), Query Frame = 3
Query:    3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKL 398
            T   Y+  M+    PE+ R  L  + LQ+K L +  +  F    ++PP  E +  A+ +L  +GA++   +LT LG  +A+ P+D  + KM++    + C + ILS++A LS    F+ P + K+  + AK+
Sbjct:  254 TEKAYDSEMQDNTYPEILRSNLGTVVLQLKKLGIDDLVHF--DFMDPPAPETLMRALELLNYLGALDDSGDLTRLGSMMAEFPLDPQLAKMVIASTDYSCSNEILSVTAMLSVPQCFLRPNEAKKLADEAKM 383          
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX15_PONAB (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Pongo abelii GN=DHX15 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 7.415e-12
Identity = 40/132 (30.30%), Postives = 70/132 (53.03%), Query Frame = 3
Query:    3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKL 398
            T   Y+  M+    PE+ R  L  + LQ+K L +  +  F    ++PP  E +  A+ +L  + A+  D +LT LG  +A+ P+D  + KM++    + C + +LSI+A LS    F+ P + K+  + AK+
Sbjct:  486 TEKAYKTEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHF--DFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVIASCDYNCSNEVLSITAMLSVPQCFVRPTEAKKAADEAKM 615          
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX15_MOUSE (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Mus musculus GN=Dhx15 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 7.415e-12
Identity = 40/132 (30.30%), Postives = 70/132 (53.03%), Query Frame = 3
Query:    3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKL 398
            T   Y+  M+    PE+ R  L  + LQ+K L +  +  F    ++PP  E +  A+ +L  + A+  D +LT LG  +A+ P+D  + KM++    + C + +LSI+A LS    F+ P + K+  + AK+
Sbjct:  486 TEKAYKTEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHF--DFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVIASCDYNCSNEVLSITAMLSVPQCFVRPTEAKKAADEAKM 615          
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX15_HUMAN (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Homo sapiens GN=DHX15 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 7.415e-12
Identity = 40/132 (30.30%), Postives = 70/132 (53.03%), Query Frame = 3
Query:    3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKL 398
            T   Y+  M+    PE+ R  L  + LQ+K L +  +  F    ++PP  E +  A+ +L  + A+  D +LT LG  +A+ P+D  + KM++    + C + +LSI+A LS    F+ P + K+  + AK+
Sbjct:  486 TEKAYKTEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHF--DFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVIASCDYNCSNEVLSITAMLSVPQCFVRPTEAKKAADEAKM 615          
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX15_ARATH (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At2g47250 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 9.684e-12
Identity = 38/131 (29.01%), Postives = 69/131 (52.67%), Query Frame = 3
Query:    3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAK 395
            T   +   ++P   PE+ R  L    L +K L +  +  F    ++PP  E +  A+ VL  +GA++ +  LT  G  +++ P+D  + KM++    F C + ILS+SA LS  + F+ P++ ++  + AK
Sbjct:  417 TEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHF--DFMDPPAPETLMRALEVLNYLGALDDEGNLTKTGEIMSEFPLDPQMSKMLIVSPEFNCSNEILSVSAMLSVPNCFVRPREAQKAADEAK 545          
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: BGCN_DROME (Benign gonial cell neoplasm protein OS=Drosophila melanogaster GN=bgcn PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 9.684e-12
Identity = 42/124 (33.87%), Postives = 67/124 (54.03%), Query Frame = 3
Query:    3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRI-KIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDE 371
            ++  YE+L    Q P +Q M L ++CL +KLLS   I   +L   + PP    +  A+  L ++  ++  E++T LG  L  +PV   +G+M++FG +  CL PIL+I + LS   P   P  E
Sbjct:  632 SKEAYEELSETSQ-PSLQTMQLDKICLAVKLLSPNTIISEYLGITISPPPLINVHHAVQFLKKIDVLDDAEDVTWLGCRLMDIPVSCQLGRMLIFGILLRCLDPILTIVSSLSTADPLGIPFTE 754          
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX8_DICDI (ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum GN=dhx8 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.680e-11
Identity = 37/131 (28.24%), Postives = 70/131 (53.44%), Query Frame = 3
Query:    3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAK 395
            T   ++  M    +PE+QR  L    L +K + +  +  F    ++PP  + + +A+  LY +GA++ +  LT LG  +A+ P+D  + KM++     GC   IL++ A LS ++ F  PK+++   ++ K
Sbjct:  847 TESAFKNEMLASSIPEIQRTNLGNTVLTMKAMGINDLLNF--DFMDPPPVQTLVSAMEQLYSLGALDEEGLLTRLGRKMAEFPLDPQLSKMLIASVDLGCSDEILTVVAMLSVQNVFYRPKEKQALADQKK 975          
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX8_ARATH (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At3g26560 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 3.680e-11
Identity = 36/131 (27.48%), Postives = 71/131 (54.20%), Query Frame = 3
Query:    3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAK 395
            T   Y   M P  +PE+QR+ L    L +K + +  +  F    ++PP+ +A+ +A+  LY +GA++ +  LT LG  +A+ P++  + KM+L     GC   IL++ A +   + F  P++++   ++ +
Sbjct:  854 TESAYRNEMPPTSIPEIQRINLGMTTLTMKAMGINDLLSF--DFMDPPQPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLEPPLSKMLLASVDLGCSDEILTMIAMIQTGNIFYRPREKQAQADQKR 982          
The following BLAST results are available for this feature:
BLAST of CB250339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
YL419_YEAST3.328e-1231.82Putative ATP-dependent RNA helicase YLR419W OS=Sac... [more]
PRP22_SCHPO3.328e-1226.58Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
DHX15_STRPU4.347e-1230.30Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX15_PONAB7.415e-1230.30Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX15_MOUSE7.415e-1230.30Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX15_HUMAN7.415e-1230.30Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX15_ARATH9.684e-1229.01Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
BGCN_DROME9.684e-1233.87Benign gonial cell neoplasm protein OS=Drosophila ... [more]
DHX8_DICDI3.680e-1128.24ATP-dependent RNA helicase dhx8 OS=Dictyostelium d... [more]
DHX8_ARATH3.680e-1127.48Probable pre-mRNA-splicing factor ATP-dependent RN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionEST0128 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ191 similar to hypothetical Arabidopsis protein (acc# NP_176103), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250339 ID=CB250339; Name=CB250339; organism=Citrus sinensis; type=EST; length=478bp
GCACACGTCATAGGTATGAAAAGCTCATGCGTCCTTATCAGGTTCCTGAG
ATGCAGCGGATGCCTCTGGTTGAGTTGTGTTTACAAATTAAGTTACTTTC
TCTAGGACGCATAAAGATATTTCTATCCAAGGCGTTAGAACCTCCTAAGG
AAGAAGCTATTACTACTGCAATTTCAGTATTGTATGAGGTTGGTGCTATT
GAAGGGGATGAGGAATTGACCCCTCTTGGCCATCATTTGGCCAAACTTCC
TGTCGATGTATTGATTGGAAAGATGATGCTCTTTGGTGGAATATTTGGTT
GCTTATCTCCCATTCTCTCTATATCAGCTTTTCTTAGCTACAAATCACCA
TTTATTTATCCCAAGGATGAGAAGCAAAATGTTGAAAGAGCTAAATTGGC
TCTATTAACTGATAAGCTAGAGGGATTAAGTGATTCAAATGACAGTTCAA
CGCAATCTGACCATCTGGTATTGATGGT
back to top