CB250339
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: YL419_YEAST (Putative ATP-dependent RNA helicase YLR419W OS=Saccharomyces cerevisiae GN=YLR419W PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 3.328e-12 Identity = 42/132 (31.82%), Postives = 75/132 (56.82%), Query Frame = 3 Query: 3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAI-EGDEELTPLGHHLAKLPV-DVLIGKMMLFGGIFGCLS-PILSISAFLSYKSPFIYPKDEKQNVER 389 +++ YE M +PE++R+PL L L +K + + +K FLS AL+ P A+ A +L +G + E D+ LT LG ++ +PV D GK++++G +FGC +L +S PFI + ++ +++ Sbjct: 988 SKNLYENDMISMPIPEIKRIPLESLYLSVKAMGIKDVKAFLSTALDAPPLPALQKAERILTTIGLVDESDKSLTQLGQFISLMPVMDSKHGKLLIYGILFGCTDISVLLVSILGIGVLPFIGGFENREKIKK 1119
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: PRP22_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22 OS=Schizosaccharomyces pombe GN=prp22 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 3.328e-12 Identity = 42/158 (26.58%), Postives = 78/158 (49.37%), Query Frame = 3 Query: 3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLALLTDKLEGLSDSNDSSTQSDHLVLM 476 T Y M P +PE+QR L L +K + + + F ++PP + + A+ LY + A++ + LTPLG +A P++ + K+++ GC +LSI A LS + + P++++Q +R + + ++ +SDHL L+ Sbjct: 850 TESAYRNEMLPSPIPEIQRQNLSHTILMLKAMGINDLLNF--DFMDPPPAQTMIAALQNLYALSALDDEGLLTPLGRKMADFPMEPQLSKVLITSVELGCSEEMLSIIAMLSVPNIWSRPREKQQEADRQR-------------AQFANPESDHLTLL 992
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX15_STRPU (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 (Fragment) OS=Strongylocentrotus purpuratus GN=PRP1 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 4.347e-12 Identity = 40/132 (30.30%), Postives = 71/132 (53.79%), Query Frame = 3 Query: 3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKL 398 T Y+ M+ PE+ R L + LQ+K L + + F ++PP E + A+ +L +GA++ +LT LG +A+ P+D + KM++ + C + ILS++A LS F+ P + K+ + AK+ Sbjct: 254 TEKAYDSEMQDNTYPEILRSNLGTVVLQLKKLGIDDLVHF--DFMDPPAPETLMRALELLNYLGALDDSGDLTRLGSMMAEFPLDPQLAKMVIASTDYSCSNEILSVTAMLSVPQCFLRPNEAKKLADEAKM 383
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX15_PONAB (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Pongo abelii GN=DHX15 PE=2 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 7.415e-12 Identity = 40/132 (30.30%), Postives = 70/132 (53.03%), Query Frame = 3 Query: 3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKL 398 T Y+ M+ PE+ R L + LQ+K L + + F ++PP E + A+ +L + A+ D +LT LG +A+ P+D + KM++ + C + +LSI+A LS F+ P + K+ + AK+ Sbjct: 486 TEKAYKTEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHF--DFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVIASCDYNCSNEVLSITAMLSVPQCFVRPTEAKKAADEAKM 615
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX15_MOUSE (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Mus musculus GN=Dhx15 PE=2 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 7.415e-12 Identity = 40/132 (30.30%), Postives = 70/132 (53.03%), Query Frame = 3 Query: 3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKL 398 T Y+ M+ PE+ R L + LQ+K L + + F ++PP E + A+ +L + A+ D +LT LG +A+ P+D + KM++ + C + +LSI+A LS F+ P + K+ + AK+ Sbjct: 486 TEKAYKTEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHF--DFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVIASCDYNCSNEVLSITAMLSVPQCFVRPTEAKKAADEAKM 615
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX15_HUMAN (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Homo sapiens GN=DHX15 PE=1 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 7.415e-12 Identity = 40/132 (30.30%), Postives = 70/132 (53.03%), Query Frame = 3 Query: 3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKL 398 T Y+ M+ PE+ R L + LQ+K L + + F ++PP E + A+ +L + A+ D +LT LG +A+ P+D + KM++ + C + +LSI+A LS F+ P + K+ + AK+ Sbjct: 486 TEKAYKTEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHF--DFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVIASCDYNCSNEVLSITAMLSVPQCFVRPTEAKKAADEAKM 615
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX15_ARATH (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At2g47250 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 9.684e-12 Identity = 38/131 (29.01%), Postives = 69/131 (52.67%), Query Frame = 3 Query: 3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAK 395 T + ++P PE+ R L L +K L + + F ++PP E + A+ VL +GA++ + LT G +++ P+D + KM++ F C + ILS+SA LS + F+ P++ ++ + AK Sbjct: 417 TEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHF--DFMDPPAPETLMRALEVLNYLGALDDEGNLTKTGEIMSEFPLDPQMSKMLIVSPEFNCSNEILSVSAMLSVPNCFVRPREAQKAADEAK 545
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: BGCN_DROME (Benign gonial cell neoplasm protein OS=Drosophila melanogaster GN=bgcn PE=1 SV=2) HSP 1 Score: 69.3218 bits (168), Expect = 9.684e-12 Identity = 42/124 (33.87%), Postives = 67/124 (54.03%), Query Frame = 3 Query: 3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRI-KIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDE 371 ++ YE+L Q P +Q M L ++CL +KLLS I +L + PP + A+ L ++ ++ E++T LG L +PV +G+M++FG + CL PIL+I + LS P P E Sbjct: 632 SKEAYEELSETSQ-PSLQTMQLDKICLAVKLLSPNTIISEYLGITISPPPLINVHHAVQFLKKIDVLDDAEDVTWLGCRLMDIPVSCQLGRMLIFGILLRCLDPILTIVSSLSTADPLGIPFTE 754
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX8_DICDI (ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum GN=dhx8 PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 3.680e-11 Identity = 37/131 (28.24%), Postives = 70/131 (53.44%), Query Frame = 3 Query: 3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAK 395 T ++ M +PE+QR L L +K + + + F ++PP + + +A+ LY +GA++ + LT LG +A+ P+D + KM++ GC IL++ A LS ++ F PK+++ ++ K Sbjct: 847 TESAFKNEMLASSIPEIQRTNLGNTVLTMKAMGINDLLNF--DFMDPPPVQTLVSAMEQLYSLGALDEEGLLTRLGRKMAEFPLDPQLSKMLIASVDLGCSDEILTVVAMLSVQNVFYRPKEKQALADQKK 975
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX8_ARATH (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At3g26560 PE=1 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 3.680e-11 Identity = 36/131 (27.48%), Postives = 71/131 (54.20%), Query Frame = 3 Query: 3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAK 395 T Y M P +PE+QR+ L L +K + + + F ++PP+ +A+ +A+ LY +GA++ + LT LG +A+ P++ + KM+L GC IL++ A + + F P++++ ++ + Sbjct: 854 TESAYRNEMPPTSIPEIQRINLGMTTLTMKAMGINDLLSF--DFMDPPQPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLEPPLSKMLLASVDLGCSDEILTMIAMIQTGNIFYRPREKQAQADQKR 982 The following BLAST results are available for this feature:
BLAST of CB250339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 50
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Sequences
The
following sequences are available for this feature:
EST sequence >CB250339 ID=CB250339; Name=CB250339; organism=Citrus sinensis; type=EST; length=478bpback to top |