CB250342

Overview
NameCB250342
Unique NameCB250342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250342 vs. ExPASy Swiss-Prot
Match: CLV1_ARATH (Receptor protein kinase CLAVATA1 OS=Arabidopsis thaliana GN=CLV1 PE=1 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 1.365e-24
Identity = 69/195 (35.38%), Postives = 106/195 (54.36%), Query Frame = 1
Query:    1 ALCQHLQRERGSGLPWTIRLTIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSR-LGMTESSHISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIITALKVV-DFSRPHSEVNLAALAIDRIGRGCVDEIIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEEL 579
            +L + L   +G  L W  R  +A E A+ + YLH   +P I HRD+KS+NILLD ++ + VADFGL++ L    +S   ++  G+ GY+ P+Y     + +KSDVYSFGVVL+E+I   K V +F      V       + I +     I+   ++P    + L+S+ +V ++A  C+      RPTM EV   L
Sbjct:  773 SLGELLHGSKGGHLQWETRHRVAVEAAKGLCYLHHDCSPLILHRDVKSNNILLDSDFEAHVADFGLAKFLVDGAASECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELIAGKKPVGEFGEGVDIVRWVRNTEEEITQPSDAAIVVAIVDPRLTGYPLTSVIHVFKIAMMCVEEEAAARPTMREVVHML 967          
BLAST of CB250342 vs. ExPASy Swiss-Prot
Match: SERK2_ARATH (Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana GN=SERK2 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.782e-24
Identity = 62/183 (33.88%), Postives = 106/183 (57.92%), Query Frame = 1
Query:   40 LPWTIRLTIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRLGMTESSHISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIITALKVVDFSR--PHSEVNLAALAIDRIGRGCVDEIIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELE 582
            L W+IR  IA  +A+ ++YLH   +P I HRD+K++NILLD  + + V DFGL+RL   + +H++TA +GT G++ P+Y      S+K+DV+ +G++L+E+IT  +  D +R     +V L       +    ++ ++DP L+ +   +T + +  + ++A  C       RP M EV   LE
Sbjct:  401 LAWSIRQQIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLARLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQSN---YTEAEVEQLIQVALLCTQSSPMERPKMSEVVRMLE 580          
BLAST of CB250342 vs. ExPASy Swiss-Prot
Match: Y5343_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53430 OS=Arabidopsis thaliana GN=At1g53430 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.328e-24
Identity = 65/181 (35.91%), Postives = 99/181 (54.70%), Query Frame = 1
Query:   40 LPWTIRLTIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRLGMTESSHISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIITALKVVDFSRPHSEVNLAALAIDRIGRGCVDEIIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELE 582
            L W+ R  I    A+ +AYLH      I HRDIK++N+LLD +  +K++DFGL++L   E++HIST   GT GY+ P+Y    +L+DK+DVYSFGVV +EI++     ++      V L   A     +G + E++DP L     +++      +  +A  C      +RP M  V   LE
Sbjct:  764 LDWSTRNKICIGIAKGLAYLHEESRLKIVHRDIKATNVLLDLSLNAKISDFGLAKLNDDENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVCLEIVSGKSNTNYRPKEEFVYLLDWAYVLQEQGSLLELVDPDL---GTSFSKKEAMRMLNIALLCTNPSPTLRPPMSSVVSMLE 941          
BLAST of CB250342 vs. ExPASy Swiss-Prot
Match: ACCR3_ARATH (Putative serine/threonine-protein kinase-like protein CCR3 OS=Arabidopsis thaliana GN=CCR3 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.328e-24
Identity = 70/191 (36.65%), Postives = 103/191 (53.93%), Query Frame = 1
Query:   46 WTIRLTIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRLGMTESSHIS-----TAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIITALKVVDFSRPHSE-------VNLAALAIDRIGRGCVDEIIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELE 582
            W +R+ IA + A+ I YLH+   PPI HRDIKSSNILLD N+ ++V+DFGLS +G       +     T   GT GY+DP+Y+    L+DKSDVY  GVVL+E++T  + +  +    E       V+L   ++  I    +  I+DP +    +     ++  VA  A  C+      RPTM ++   LE
Sbjct:  602 WKMRIKIALDAARGIEYLHNYAVPPIIHRDIKSSNILLDSNWVARVSDFGLSLMGPVLGKDHNPYQRPTKAAGTVGYIDPEYYSLNVLTDKSDVYGLGVVLLELLTGKRAIFRNNGDVEEEEGCVPVHLVDYSVPAITADELSTILDPRV-GSPELGEGDAVELVAYTAMHCVNAEGRNRPTMTDIVGNLE 791          
BLAST of CB250342 vs. ExPASy Swiss-Prot
Match: Y2706_ARATH (Probable receptor-like protein kinase At2g47060 OS=Arabidopsis thaliana GN=At2g47060 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.040e-24
Identity = 69/185 (37.30%), Postives = 99/185 (53.51%), Query Frame = 1
Query:   31 GSGLPWTIRLTIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRLGMTESSHI-STAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIITALKVVDFSRPHSEVNLAALAIDRIGRGCVDEIIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELE 582
            G  L W  R+ IA   A+ + YLH   NP I HRDIKSSN+LL  +  +K+ADF LS      ++ + ST   GT GY  P+Y     L+ KSDVYSFGVVL+E++T  K VD   P  + +L   A  ++    V + +D  L      +   ++  +A +A  C+ +  D RP M  V + L+
Sbjct:  169 GPVLSWYQRVKIAVGAARGLEYLHEKANPHIIHRDIKSSNVLLFEDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHRLPRGQQSLVTWATPKLSEDKVKQCVDARL---GGDYPPKAVAKLAAVAALCVQYEADFRPNMSIVVKALQ 350          
BLAST of CB250342 vs. ExPASy Swiss-Prot
Match: RKF1_ARATH (Probable LRR receptor-like serine/threonine-protein kinase RFK1 OS=Arabidopsis thaliana GN=RKF1 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.040e-24
Identity = 65/181 (35.91%), Postives = 97/181 (53.59%), Query Frame = 1
Query:   40 LPWTIRLTIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRLGMTESSHISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIITALKVVDFSRPHSEVNLAALAIDRIGRGCVDEIIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELE 582
            + W  R  I    A+ +A+LH        HRDIK++NILLD +   K++DFGL+RL   E +HIST   GT GY+ P+Y  + +L+ K+DVYSFGV+++EI+  +   +F      V L   A + +  G + +++D  L P  D         V ++A  C +     RP M EV   LE
Sbjct:  776 MDWPTRFKICCGIAKGLAFLHEESPLKFVHRDIKATNILLDKDLTPKISDFGLARLDEEEKTHISTKVAGTIGYMAPEYALWGYLTFKADVYSFGVLVLEIVAGITNSNFMGAGDSVCLLEFANECVESGHLMQVVDERLRPEVDR---KEAEAVIKVALVCSSASPTDRPLMSEVVAMLE 953          
BLAST of CB250342 vs. ExPASy Swiss-Prot
Match: Y2317_ARATH (Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.773e-24
Identity = 68/190 (35.79%), Postives = 99/190 (52.11%), Query Frame = 1
Query:    1 ALCQHLQRERGSGLPWTIRLTIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRLGMTESSHISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIITALKVVDFSRPHSEVNLAALAIDRI-GRGCVDEIIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEV 567
            +L + L   +   + W  R  IA   A+ +AYLH    P I HRDIKS+NIL+D N+ + V DFGL+++     S   +A  G+ GY+ P+Y     +++K D+YSFGVVL+E++T    V       +  LA    + I       EI+DPYL    D   L+ +  V ++A  C       RPTM EV
Sbjct:  908 SLGELLHGGKSHSMDWPTRFAIALGAAEGLAYLHHDCKPRIIHRDIKSNNILIDENFEAHVGDFGLAKVIDMPLSKSVSAVAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELLTGKAPVQPLEQGGD--LATWTRNHIRDHSLTSEILDPYLTKVEDDVILNHMITVTKIAVLCTKSSPSDRPTMREV 1095          
BLAST of CB250342 vs. ExPASy Swiss-Prot
Match: RPK1_IPONI (Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 6.773e-24
Identity = 70/194 (36.08%), Postives = 105/194 (54.12%), Query Frame = 1
Query:   40 LPWTIRLTIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSR-LGMTESSHISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIITALKVVDFSRPHSEVNLAALAIDRIGRGCVDEIIDP-YLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELEHIRVSSWASNI 615
            L W+ R  IA  TA  +AYLH   +P I HRDIK  NILLD +    ++DFG+++ L  + +S  S   QGT GY+ P+       S +SDVYS+GVVL+E+IT  K +D S       +  +       G + +I+DP  L+   D+  +  +     LA RC     D RPTM +V ++L    + S++S++
Sbjct:  911 LDWSTRHNIAVGTAHGLAYLHFDCDPAIVHRDIKPMNILLDSDLEPHISDFGIAKLLDQSATSIPSNTVQGTIGYMAPENAFTTVKSRESDVYSYGVVLLELITRKKALDPSFNGETDIVGWVRSVWTQTGEIQKIVDPSLLDELIDSSVMEQVTEALSLALRCAEKEVDKRPTMRDVVKQLTRWSIRSYSSSV 1104          
BLAST of CB250342 vs. ExPASy Swiss-Prot
Match: Y5344_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53440 OS=Arabidopsis thaliana GN=At1g53440 PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 8.845e-24
Identity = 62/181 (34.25%), Postives = 99/181 (54.70%), Query Frame = 1
Query:   40 LPWTIRLTIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRLGMTESSHISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIITALKVVDFSRPHSEVNLAALAIDRIGRGCVDEIIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELE 582
            L W+ R  +    A+ +AYLH      I HRDIK++N+LLD +  +K++DFGL++L   E++HIST   GT GY+ P+Y    +L+DK+DVYSFGVV +EI++     ++      + L   A     +G + E++DP L     +++      +  +A  C      +RP M  V   L+
Sbjct:  762 LDWSTRNKVCIGIAKGLAYLHEESRLKIVHRDIKATNVLLDLSLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVCLEIVSGKSNTNYRPKEEFIYLLDWAYVLQEQGSLLELVDPDL---GTSFSKKEAMRMLNIALLCTNPSPTLRPPMSSVVSMLQ 939          
BLAST of CB250342 vs. ExPASy Swiss-Prot
Match: Y1765_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07650 OS=Arabidopsis thaliana GN=At1g07650 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.845e-24
Identity = 66/181 (36.46%), Postives = 97/181 (53.59%), Query Frame = 1
Query:   40 LPWTIRLTIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRLGMTESSHISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIITALKVVDFSRPHSEVNLAALAIDRIGRGCVDEIIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELE 582
            L W+ R  I    A+ + +LH      I HRDIK+SN+LLD +  +K++DFGL++L    ++HIST   GT GY+ P+Y    +L++K+DVYSFGVV +EI++     +F      V L   A     RG + E++DP L           + NV   A  C      +RPTM +V   +E
Sbjct:  774 LDWSTRKKIFLGIAKGLTFLHEESRIKIVHRDIKASNVLLDKDLNAKISDFGLAKLNDDGNTHISTRIAGTIGYMAPEYAMRGYLTEKADVYSFGVVALEIVSGKSNTNFRPTEDFVYLLDWAYVLQERGSLLELVDPTLASDYSEEEAMLMLNV---ALMCTNASPTLRPTMSQVVSLIE 951          
The following BLAST results are available for this feature:
BLAST of CB250342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 304
Match NameE-valueIdentityDescription
CLV1_ARATH1.365e-2435.38Receptor protein kinase CLAVATA1 OS=Arabidopsis th... [more]
SERK2_ARATH1.782e-2433.88Somatic embryogenesis receptor kinase 2 OS=Arabido... [more]
Y5343_ARATH2.328e-2435.91Probable LRR receptor-like serine/threonine-protei... [more]
ACCR3_ARATH2.328e-2436.65Putative serine/threonine-protein kinase-like prot... [more]
Y2706_ARATH3.040e-2437.30Probable receptor-like protein kinase At2g47060 OS... [more]
RKF1_ARATH3.040e-2435.91Probable LRR receptor-like serine/threonine-protei... [more]
Y2317_ARATH6.773e-2435.79Probable leucine-rich repeat receptor-like protein... [more]
RPK1_IPONI6.773e-2436.08Receptor-like protein kinase OS=Ipomoea nil GN=INR... [more]
Y5344_ARATH8.845e-2434.25Probable LRR receptor-like serine/threonine-protei... [more]
Y1765_ARATH8.845e-2436.46Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionEST0132 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ196 similar to putative protein kinase (acc# AAL91622), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250342 ID=CB250342; Name=CB250342; organism=Citrus sinensis; type=EST; length=705bp
GCTCTGTGTCAGCATCTGCAAAGAGAGAGAGGAAGTGGACTTCCTTGGAC
AATACGGCTTACCATAGCCACTGAGACTGCTCAAGCAATTGCCTATCTTC
ACTCAGCTATGAATCCACCAATTTACCACCGAGACATCAAATCCAGCAAT
ATACTATTGGATTACAACTATAGGTCAAAGGTAGCGGATTTTGGGCTTTC
CAGACTTGGCATGACTGAGTCATCCCACATCTCAACTGCTCCACAAGGAA
CTCCAGGCTACCTTGATCCTCAATACCATCAGTATTTCCATCTTTCTGAC
AAAAGTGATGTTTACAGTTTTGGGGTAGTTCTTATTGAGATCATAACTGC
ACTGAAAGTGGTTGATTTTTCTCGCCCTCACAGTGAGGTGAATTTGGCTG
CACTTGCTATTGATAGGATTGGAAGAGGTTGTGTGGATGAGATAATAGAT
CCATACCTTGAGCCACATAGGGATGCGTGGACACTCTCATCCATTCACAA
TGTTGCTGAGCTAGCATTTAGATGCCTTGCGTTTCATAGGGACATGAGGC
CTACTATGATGGAAGTGGCAGAAGAGCTAGAACACATCAGGGTCAGTTCA
TGGGCTTCAAATATTTATATGGGCTCACCCGCAGTGTCTTGTTGTTCATT
ATCGGAATGCGGAAGTGAGAGATCACTGAGTGGCTTGACAGTTAAGAAGG
CAGGG
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