CB250342

Overview
NameCB250342
Unique NameCB250342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250342 vs. ExPASy Swiss-Prot
Match: CRK42_ARATH (Cysteine-rich receptor-like protein kinase 42 OS=Arabidopsis thaliana GN=CRK42 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.008e-21
Identity = 63/182 (34.62%), Postives = 95/182 (52.20%), Query Frame = 1
Query:   40 LPWTIRLTIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRLGMTESSHISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIITALKVVDFSRPHSEVNLAALAIDRIGRGCVDEIIDPYLEPH--RDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEEL 579
            L W+ RL I   TA+ +AYLH      I HRDIK+SN+LLD     K+ADFGL+R    + +H+ST   GT GY+ P+Y     L++K+DVYSFGV+++EI    ++  F      +      +  + R  + E +DP L+    +   + +    V  +   C      +RP+M EV   L
Sbjct:  409 LNWSQRLNIILGTAEGLAYLHGGSPVRIIHRDIKTSNVLLDDQLNPKIADFGLARCFGLDKTHLSTGIAGTLGYMAPEYVVRGQLTEKADVYSFGVLVLEIACGTRINAFVPETGHLLQRVWNLYTLNR--LVEALDPCLKDEFLQVQGSEAEACKVLRVGLLCTQASPSLRPSMEEVIRML 588          
BLAST of CB250342 vs. ExPASy Swiss-Prot
Match: SRF6_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana GN=SRF6 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.195e-20
Identity = 63/190 (33.16%), Postives = 99/190 (52.11%), Query Frame = 1
Query:   13 HLQRERGSGLPWTIRLTIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRLGMTESSHISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIITALKVVDFSRPHSEVNLAALAIDRI-GRGCVDEIIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEEL 579
            HL  E    L W  R+ IA  TA+A+ YLH   +P I  ++IKS+NILLD      ++D GL+    T +  ++   Q   GY  P+       S KSD+YSFGVV++E++T  K  D +R  SE +L   A  ++     + +++DP L   +  + + S+   A++   C+    + RP M EV + L
Sbjct:  504 HLSEEESKALVWNSRVKIALGTARALEYLHEVCSPSIVDKNIKSANILLDSELNPHLSDSGLASFLPTANELLN---QTDEGYSAPEVSMSGQYSLKSDIYSFGVVMLELLTGRKPFDSTRSRSEQSLVRWATPQLHDIDALAKMVDPAL---KGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQAL 687          
BLAST of CB250342 vs. ExPASy Swiss-Prot
Match: SUB_ARATH (Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.561e-20
Identity = 61/196 (31.12%), Postives = 102/196 (52.04%), Query Frame = 1
Query:   13 HLQRERGSGLPWTIRLTIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRLGMTESSHISTAPQGT---PGYLDPQYHQYFHLSDKSDVYSFGVVLIEIITALKVVDFSRPHSEVNLAALAIDRI-GRGCVDEIIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELEHI 588
            HL R+    L W +R+ IA   ++A+ +LH    PP+ H++ KSS +LLD     +VAD GL+ +           P+ T    GY  P+  +Y   + +SDV+S GVV++E++T  +  D +RP     LA  AI R+     +  ++DP L     A+ + S+   A++  R L      RP + E+ ++L+H+
Sbjct:  585 HLDRKLHKKLTWNVRINIALGASKALQFLHEVCQPPVVHQNFKSSKVLLDGKLSVRVADSGLAYM---------LPPRPTSQMAGYAAPEV-EYGSYTCQSDVFSLGVVMLELLTGRRPFDRTRPRGHQTLAQWAIPRLHDIDALTRMVDPSL---HGAYPMKSLSRFADIISRSLQMEPGFRPPISEIVQDLQHM 767          
BLAST of CB250342 vs. ExPASy Swiss-Prot
Match: STPKL_ARATH (Serine/threonine-protein kinase-like protein At5g23170 OS=Arabidopsis thaliana GN=At5g23170 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.561e-20
Identity = 60/133 (45.11%), Postives = 80/133 (60.15%), Query Frame = 1
Query:   46 WTIRLTIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRLGMTESSHISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIITALKVVDFSRPHSEVNLAALAIDRIGRGCVDEI 444
            W  R+ IA + A A+ +LH      I HRDIKS NIL D N+ +K+ADFGL+ +       I  AP GT GYLDP Y    +LS K+DVYS+GVVL+EI++  K +D SR  S  ++   A+  I  G + EI
Sbjct:  127 WLKRIEIALQIASAVHFLHEH---GIIHRDIKSENILFDSNWEAKLADFGLA-VDFGGDKKIRPAPAGTIGYLDPCYTLPENLSMKTDVYSYGVVLLEIVSCRKAIDVSR--SPASIVDWAVPLIKEGRIGEI 253          
BLAST of CB250342 vs. ExPASy Swiss-Prot
Match: Y1124_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g12460 OS=Arabidopsis thaliana GN=At1g12460 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.039e-20
Identity = 62/186 (33.33%), Postives = 99/186 (53.23%), Query Frame = 1
Query:   40 LPWTIRLTIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSR-LGMTESSHISTAPQGTPGYLDPQY-HQYFHLSDKSDVYSFGVVLIEIITALKVVDFSRPHSEVNLAALAIDRIGRGCVDEIIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELEHIR 591
            L W  R  IA  TA+A+++LH+   P I H ++KS+NILLD  Y +K++D+GL + L + +S  ++       GY+ P+   Q    S+K DVYS+GVVL+E++T  K V+    +  + L     D +  G   +  D  L    +    + +  V +L   C + +   RP+M EV + LE IR
Sbjct:  696 LNWHRRFQIALGTAKALSFLHNDCKPAILHLNVKSTNILLDERYEAKLSDYGLEKFLPVMDSFGLTKKFHNAVGYIAPELAQQSLRASEKCDVYSYGVVLLELVTGRKPVESPSENQVLILRDYVRDLLETGSASDCFDRRLREFEE----NELIQVMKLGLLCTSENPLKRPSMAEVVQVLESIR 877          
BLAST of CB250342 vs. ExPASy Swiss-Prot
Match: CRK23_ARATH (Putative cysteine-rich receptor-like protein kinase 23 OS=Arabidopsis thaliana GN=CRK23 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.039e-20
Identity = 65/182 (35.71%), Postives = 90/182 (49.45%), Query Frame = 1
Query:   40 LPWTIRLTIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRL-GMTESSHISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIITALKVVD-FSRPHSEVNLAALAIDRIGRGCVDEIIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEEL 579
            L WT R  I    A+ I YLH      I HRD+K+ NILLD +   KVADFG++R+ GM ++   +    GT GY+ P+Y  Y   S KSDVYSFGV++ EII+ +K    +    S  NL          G   +++DP      D +    I     +A  C+    D RP M  + + L
Sbjct:  602 LDWTRRYKIIGGIARGILYLHQDSRLTIIHRDLKAGNILLDADMNPKVADFGMARIFGMDQTEANTRRVVGTYGYMAPEYAMYGQFSMKSDVYSFGVLVFEIISGMKNSSLYQMDDSVSNLVTYTWRLWSNGSQLDLVDP---SFGDNYQTHDITRCIHIALLCVQEDVDDRPNMSAIVQML 780          
BLAST of CB250342 vs. ExPASy Swiss-Prot
Match: Y5005_ARATH (Probable receptor-like protein kinase At5g20050 OS=Arabidopsis thaliana GN=At5g20050 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.663e-20
Identity = 50/108 (46.30%), Postives = 69/108 (63.89%), Query Frame = 1
Query:   22 RERGSGLPWTIRLTIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRLGMTESSHISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEII 345
            R  G  L W  R  +A + A+A+AYLH      I H D+K  NILLD N+R+ V DFGLS+L   + S + T  +GT GYL P++     +S+KSDVYS+G+VL+E+I
Sbjct:  199 RSGGGCLSWEQRYQVAIDVAKALAYLHHDCRSKILHLDVKPENILLDENFRAVVTDFGLSKLIARDESRVLTDIRGTRGYLAPEWLLEHGISEKSDVYSYGIVLLEMI 306          
BLAST of CB250342 vs. ExPASy Swiss-Prot
Match: SRK6_BRAOE (Putative serine/threonine-protein kinase receptor OS=Brassica oleracea var. acephala GN=SRK6 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.478e-20
Identity = 62/187 (33.16%), Postives = 92/187 (49.20%), Query Frame = 1
Query:   22 RERGSGLPWTIRLTIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRLGMTESSHISTAP-QGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIITALKVVDFSRPHSEVNLAALAIDRIGRGCVDEIIDPY----LEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEV 567
            + R S L W  R  I    A+ + YLH      I HRD+K SNILLD N   K++DFG++R+   + +  +T    GT GY+ P+Y  Y   S+KSDV+SFGV+++EI++  K   F     E +L +    R   G   EI+DP     L      +    +    ++   C+    + RP M  V
Sbjct:  616 KTRRSKLNWNERFDITNGVARGLLYLHQDSRFRIIHRDLKVSNILLDKNMIPKISDFGMARIFERDETEANTMKVVGTYGYMSPEYAMYGIFSEKSDVFSFGVIVLEIVSGKKNRGFYNLDYENDLLSYVWSRWKEGRALEIVDPVIVDSLSSQPSIFQPQEVLKCIQIGLLCVQELAEHRPAMSSV 802          
BLAST of CB250342 vs. ExPASy Swiss-Prot
Match: KINX_DICDI (Probable serine/threonine-protein kinase kinX OS=Dictyostelium discoideum GN=kinX PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.478e-20
Identity = 59/203 (29.06%), Postives = 108/203 (53.20%), Query Frame = 1
Query:   10 QHLQRERGSGLPWTIRLTIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRLGMTESSHISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIITALKVVDFSRPHSEVNLAALAIDRIGRGCVDEIIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELEHIRVSSWASNIY 618
            Q+  + +   LPW +R  IA + + A++YLHS     I HRD+KS+N+L+D N++ KV DFG +R+ + E ++ S    GT  ++ P+        ++SD++SFG+VL+EII+ +K   + R  S              G  ++I+   L P           ++ +L F C +   + RP+  E+++ L+ I+ +  ++ +Y
Sbjct:  108 QYYLKNQSIDLPWFLRANIALDVSLAMSYLHSKS---IVHRDLKSTNLLVDKNWKIKVCDFGFARI-VEEDNNKSMTICGTDNWMSPEMITGLDYDERSDIFSFGIVLLEIISRVKPAPYMRDAS-------------FGLAEDIVRNQLIP------TDCPESLIDLTFNCCSVDPNNRPSFKEISQTLKQIKTTLDSNIVY 287          
BLAST of CB250342 vs. ExPASy Swiss-Prot
Match: CRK7_ARATH (Cysteine-rich receptor-like protein kinase 7 OS=Arabidopsis thaliana GN=CRK7 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.478e-20
Identity = 61/178 (34.27%), Postives = 91/178 (51.12%), Query Frame = 1
Query:   40 LPWTIRLTIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRL-GMTESSHISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIITALKVVDFSRPHSEVNLAALAIDRIGRGCVDEIIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVA 570
            L WT R  I    A+ I YLH      I HRD+K+SNILLD +   K+ADFG++R+ GM ++   ++   GT GY+ P+Y      S KSDVYSFGV+++EII+  K   F       +L   A      G   +++DP++    D+   S +     +   C+      RP M  ++
Sbjct:  430 LYWTQRYHIIGGIARGILYLHQDSRLTIIHRDLKASNILLDADMNPKIADFGMARIFGMDQTQQNTSRIVGTYGYMSPEYAMRGQFSMKSDVYSFGVLVLEIISGRKNNSFIETDDAQDLVTHAWRLWRNGTALDLVDPFI---ADSCRKSEVVRCTHIGLLCVQEDPVKRPAMSTIS 604          
The following BLAST results are available for this feature:
BLAST of CB250342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 304
Match NameE-valueIdentityDescription
CRK42_ARATH7.008e-2134.62Cysteine-rich receptor-like protein kinase 42 OS=A... [more]
SRF6_ARATH1.195e-2033.16Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsi... [more]
SUB_ARATH1.561e-2031.12Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB ... [more]
STPKL_ARATH1.561e-2045.11Serine/threonine-protein kinase-like protein At5g2... [more]
Y1124_ARATH2.039e-2033.33Probable LRR receptor-like serine/threonine-protei... [more]
CRK23_ARATH2.039e-2035.71Putative cysteine-rich receptor-like protein kinas... [more]
Y5005_ARATH2.663e-2046.30Probable receptor-like protein kinase At5g20050 OS... [more]
SRK6_BRAOE3.478e-2033.16Putative serine/threonine-protein kinase receptor ... [more]
KINX_DICDI3.478e-2029.06Probable serine/threonine-protein kinase kinX OS=D... [more]
CRK7_ARATH3.478e-2034.27Cysteine-rich receptor-like protein kinase 7 OS=Ar... [more]

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Properties
Property NameValue
Genbank descriptionEST0132 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ196 similar to putative protein kinase (acc# AAL91622), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250342 ID=CB250342; Name=CB250342; organism=Citrus sinensis; type=EST; length=705bp
GCTCTGTGTCAGCATCTGCAAAGAGAGAGAGGAAGTGGACTTCCTTGGAC
AATACGGCTTACCATAGCCACTGAGACTGCTCAAGCAATTGCCTATCTTC
ACTCAGCTATGAATCCACCAATTTACCACCGAGACATCAAATCCAGCAAT
ATACTATTGGATTACAACTATAGGTCAAAGGTAGCGGATTTTGGGCTTTC
CAGACTTGGCATGACTGAGTCATCCCACATCTCAACTGCTCCACAAGGAA
CTCCAGGCTACCTTGATCCTCAATACCATCAGTATTTCCATCTTTCTGAC
AAAAGTGATGTTTACAGTTTTGGGGTAGTTCTTATTGAGATCATAACTGC
ACTGAAAGTGGTTGATTTTTCTCGCCCTCACAGTGAGGTGAATTTGGCTG
CACTTGCTATTGATAGGATTGGAAGAGGTTGTGTGGATGAGATAATAGAT
CCATACCTTGAGCCACATAGGGATGCGTGGACACTCTCATCCATTCACAA
TGTTGCTGAGCTAGCATTTAGATGCCTTGCGTTTCATAGGGACATGAGGC
CTACTATGATGGAAGTGGCAGAAGAGCTAGAACACATCAGGGTCAGTTCA
TGGGCTTCAAATATTTATATGGGCTCACCCGCAGTGTCTTGTTGTTCATT
ATCGGAATGCGGAAGTGAGAGATCACTGAGTGGCTTGACAGTTAAGAAGG
CAGGG
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