CB250342

Overview
NameCB250342
Unique NameCB250342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB250342_ssr22 microsatellite CB250342_ssr22:22..31. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig118 contig Csv1_Contig118:1..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250342 vs. ExPASy Swiss-Prot
Match: WAK4_ARATH (Wall-associated receptor kinase 4 OS=Arabidopsis thaliana GN=WAK4 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.219e-34
Identity = 81/188 (43.09%), Postives = 111/188 (59.04%), Query Frame = 1
Query:   34 SGLPWTIRLTIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRLGMTESSHISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIITALKVVDFSRPHSEVNLAALAIDRIGRGCVDEIIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELEHIRVS 597
            S L W  RL +A E A  +AYLHS+ + PI HRDIK++NILLD N  +KVADFG SRL   +   ++T  QGT GYLDP+Y+    L++KSDVYSFGVVL+E+++  K + F RP +  ++ +          + EIID  +    +      I   A +A  C     + RP M EVA ELE +RV+
Sbjct:  502 SSLTWEHRLRMAVEIAGTLAYLHSSASIPIIHRDIKTANILLDENLTAKVADFGASRLIPMDKEDLATMVQGTLGYLDPEYYNTGLLNEKSDVYSFGVVLMELLSGQKALCFERPQTSKHIVSYFASATKENRLHEIIDGQVMNENNQ---REIQKAARIAVECTRLTGEERPGMKEVAAELEALRVT 686          
BLAST of CB250342 vs. ExPASy Swiss-Prot
Match: RLK6_ARATH (Receptor-like protein kinase At3g21340 OS=Arabidopsis thaliana GN=At3g21340 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.219e-34
Identity = 84/194 (43.30%), Postives = 119/194 (61.34%), Query Frame = 1
Query:    4 LCQHLQRERGSG-LPWTIRLTIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRLGMTE-SSHISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIITALKVVDFSRPHSEVNLAALAIDRIGRGCVDEIIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEEL 579
            L +H+  +RG   L W  RL I  E+AQ + YLH+   PP+ HRD+K++NILL+ +  +K+ADFGLSR    E  +H+ST   GTPGYLDP+Y++   L++KSDVYSFG+VL+EIIT   V++ SR   + ++A      + +G +  I+DP L    D+    S+    ELA  CL      RPTM +V  EL
Sbjct:  673 LREHMSGKRGGSILNWETRLKIVVESAQGLEYLHNGCKPPMVHRDVKTTNILLNEHLHAKLADFGLSRSFPIEGETHVSTVVAGTPGYLDPEYYRTNWLNEKSDVYSFGIVLLEIITNQLVINQSR--EKPHIAEWVGLMLTKGDIQNIMDPKLYGDYDS---GSVWRAVELAMSCLNPSSARRPTMSQVVIEL 861          
BLAST of CB250342 vs. ExPASy Swiss-Prot
Match: NORK_PEA (Nodulation receptor kinase OS=Pisum sativum GN=NORK PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.219e-34
Identity = 80/197 (40.61%), Postives = 120/197 (60.91%), Query Frame = 1
Query:   40 LPWTIRLTIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRLGMTES-SHISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIITALKVVDFSRPHSEVNLAALAIDRIGRGCVDEIIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELEHIRVSSWASNIYMGS 627
            L W  RL+IA   A+ +AYLH+     + HRD+KSSNILLD++  +KVADFG S+    E  S++S   +GT GYLDP+Y++   LS+KSDV+SFGVVL+EI++  + ++  RP  E +L   A   I    VDEI+DP +   +  +   ++  V E+A +CL  +   RP M+++  ELE   +    ++ YM S
Sbjct:  690 LDWPTRLSIALGAARGLAYLHTFPGRSVIHRDVKSSNILLDHSMCAKVADFGFSKYAPQEGDSYVSLEVRGTAGYLDPEYYKTQQLSEKSDVFSFGVVLLEIVSGREPLNIKRPRVEWSLVEWAKPYIRASKVDEIVDPGI---KGGYHAEALWRVVEVALQCLEPYSTYRPCMVDIVRELEDALIIENNASEYMKS 883          
BLAST of CB250342 vs. ExPASy Swiss-Prot
Match: ACCR4_ARATH (Serine/threonine-protein kinase-like protein CCR4 OS=Arabidopsis thaliana GN=CCR4 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.219e-34
Identity = 80/197 (40.61%), Postives = 116/197 (58.88%), Query Frame = 1
Query:    1 ALCQHLQRERGSGLPWTIRLTIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRLGMTES---SHISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIITALKVVDFSRPHSEVNLAALAIDRIGRGCVDEIIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELE 582
            +L  HL   +   L W  RL IA + A+ I YLH  + PP+ HRDIKSSNILLD  + +KV+DFGLS++G TE    SH+S    GT GY+DP+Y+++  L+ KSDVYSFGVVL+E+++  K +  +   +  NL    +  I       I+D  + P    + + ++ +V  LA  CL      RP+M+EV  +LE
Sbjct:  535 SLADHLHNPQFDPLSWQTRLMIALDAARGIQYLHEFIVPPVIHRDIKSSNILLDATWTAKVSDFGLSQMGPTEEDDVSHLSLHAAGTLGYIDPEYYKFQQLTTKSDVYSFGVVLLELLSGHKAIHNNEDENPRNLVEYVVPYILLDEAHRILDQRIPP-PTPYEIEAVAHVGYLAAECLMPCSRKRPSMVEVVSKLE 730          
BLAST of CB250342 vs. ExPASy Swiss-Prot
Match: WAKLE_ARATH (Wall-associated receptor kinase-like 5 OS=Arabidopsis thaliana GN=WAKL5 PE=2 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.231e-33
Identity = 82/186 (44.09%), Postives = 113/186 (60.75%), Query Frame = 1
Query:   40 LPWTIRLTIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRLGMTESSHISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIITALKVVDFSRPHSEVNLAALAIDRIGRGCVDEIIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELEHIRVS 597
            + W +RL IA E A A+ Y+HSA + PIYHRDIK++NILLD  Y +KV+DFG SR    + +H++T   GT GY+DP+Y      +DKSDVYSFGVVL+E+IT  K +   R      LA   ++ +    V +IID  +   ++   L  +  VA+LA +CL+     RP M E + ELE IR S
Sbjct:  526 MTWEVRLRIAIEIAGALTYMHSAASFPIYHRDIKTTNILLDEKYGAKVSDFGTSRSVTIDQTHLTTMVAGTFGYMDPEYFLSSQYTDKSDVYSFGVVLVELITGEKPLSRIRSEEGRGLATHFLEAMKENRVIDIIDIRI---KEESKLDQLMAVAKLARKCLSRKGIKRPNMREASLELERIRSS 708          
BLAST of CB250342 vs. ExPASy Swiss-Prot
Match: NORK_MEDTR (Nodulation receptor kinase OS=Medicago truncatula GN=NORK PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.608e-33
Identity = 80/197 (40.61%), Postives = 119/197 (60.41%), Query Frame = 1
Query:   40 LPWTIRLTIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRLGMTES-SHISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIITALKVVDFSRPHSEVNLAALAIDRIGRGCVDEIIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELEHIRVSSWASNIYMGS 627
            L W  RL+IA   A+ +AYLH+     + HRD+KSSNILLD +  +KVADFG S+    E  S++S   +GT GYLDP+Y++   LS+KSDV+SFGVVL+EI++  + ++  RP  E +L   A   I    VDEI+DP +   +  +   ++  V E+A +CL  +   RP M+++  ELE   +    ++ YM S
Sbjct:  691 LDWPTRLSIALGAARGLAYLHTFPGRSVIHRDVKSSNILLDQSMCAKVADFGFSKYAPQEGDSYVSLEVRGTAGYLDPEYYKTQQLSEKSDVFSFGVVLLEIVSGREPLNIKRPRIEWSLVEWAKPYIRASKVDEIVDPGI---KGGYHAEALWRVVEVALQCLEPYSTYRPCMVDIVRELEDALIIENNASEYMKS 884          
BLAST of CB250342 vs. ExPASy Swiss-Prot
Match: Y1518_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g51860 OS=Arabidopsis thaliana GN=At1g51860 PE=2 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.743e-33
Identity = 89/220 (40.45%), Postives = 121/220 (55.00%), Query Frame = 1
Query:   31 GSGLPWTIRLTIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSR-LGMTESSHISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIITALKVVDFSRPHSEVNLAALAIDRIG----RGCVDEIIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEE------LEHIRVSSWASNIYMGSPAVSCCSLSE 657
            G+ L W  R+ IA E AQ + YLH+   PP+ HRD+K++NILL+    +K+ADFGLSR   +    H+ST   GTPGYLDP+Y++   LS+KSDVYSFGVVL+EI+T   V+D +R    +N      D +G    +G +  I+DP L    D    +    + ELA  C+    + RPTM  V  E      LE+ R         MGS   S  S S+
Sbjct:  674 GNVLTWENRMQIAVEAAQGLEYLHNGCRPPMVHRDVKTTNILLNERCGAKLADFGLSRSFPIDGECHVSTVVAGTPGYLDPEYYRTNWLSEKSDVYSFGVVLLEIVTNQPVIDKTRERPHIN------DWVGFMLTKGDIKSIVDPKLMGDYDT---NGAWKIVELALACVNPSSNRRPTMAHVVMELNDCVALENARRQGSEEMYSMGSVDYSLSSTSD 884          
BLAST of CB250342 vs. ExPASy Swiss-Prot
Match: ACR4_ARATH (Serine/threonine-protein kinase-like protein ACR4 OS=Arabidopsis thaliana GN=ACR4 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.583e-33
Identity = 75/182 (41.21%), Postives = 114/182 (62.64%), Query Frame = 1
Query:   40 LPWTIRLTIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRLGMTES-SHISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIITALKVVDFSRPHSEVNLAALAIDRIGRGCVDEIIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELE 582
            L W  R+TIA + A+ I YLH    PP+ HRDIKSSNIL+D  + ++VADFGLS LG  +S S ++  P GT GYLDP+Y++  +L+ KSDVYSFGV+L+EI++  K +D    + E N+   A+  I  G ++ ++DP L+   +   + ++  +  +A +C+      RP+M +V   LE
Sbjct:  610 LDWVKRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVADFGLSLLGPVDSGSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMH--YEEGNIVEWAVPLIKAGDINALLDPVLKHPSE---IEALKRIVSVACKCVRMRGKDRPSMDKVTTALE 786          
BLAST of CB250342 vs. ExPASy Swiss-Prot
Match: WAKLL_ARATH (Putative wall-associated receptor kinase-like 13 OS=Arabidopsis thaliana GN=WAKL13 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.679e-33
Identity = 87/197 (44.16%), Postives = 113/197 (57.36%), Query Frame = 1
Query:    4 LCQHLQRERGSGLP-WTIRLTIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRLGMTESSHISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIITALK-VVDFSRPHSEVNLAALAIDRIGRGCVDEIIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELEHI 588
            L QHL  E       W +R+ IA + + A +YLH+A   PIYHRDIKS+NILLD  YR+KV+DFG SR    + +H +T   GT GY+DP+Y+   H ++KSDVYSFGVVL+E+IT  K V+  S       LA      +    + EIID  +   R+   L  +  VA LA RCL      RP M EV+  LE I
Sbjct:  535 LFQHLHEEFDDYTALWGVRMRIAVDISGAFSYLHTAACSPIYHRDIKSTNILLDEKYRAKVSDFGTSRSVSIDHTHWTTVISGTVGYVDPEYYGSSHFTEKSDVYSFGVVLVELITGEKPVITLSETQEITGLADYFRLAMRENRLFEIIDARI---RNDCKLEQVIAVANLALRCLKKTGKTRPDMREVSTALERI 728          
BLAST of CB250342 vs. ExPASy Swiss-Prot
Match: APK1B_ARATH (Protein kinase APK1B, chloroplastic OS=Arabidopsis thaliana GN=APK1B PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 6.111e-33
Identity = 88/202 (43.56%), Postives = 122/202 (60.40%), Query Frame = 1
Query:    1 ALCQHLQRERGS---GLPWTIRLTIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRLGMT-ESSHISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIITALKVVDFSRPHSEVNLAALAIDRI-GRGCVDEIIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELEHIR 591
            +L  HL R RGS    L WT+RL +A   A+ +A+LH+A    IY RD K+SNILLD  Y +K++DFGL++ G T + SH+ST   GT GY  P+Y    HL+ KSDVYS+GVVL+E+++  + VD +RP  E  L   A   +  +  +  +ID  L+   D +++     VA LA RCL F   +RP M EV   LEHI+
Sbjct:  159 SLENHLFR-RGSYFQPLSWTLRLKVALGAAKGLAFLHNAETSVIY-RDFKTSNILLDSEYNAKLSDFGLAKDGPTGDKSHVSTRIMGTYGYAAPEYLATGHLTTKSDVYSYGVVLLEVLSGRRAVDKNRPPGEQKLVEWARPLLANKRKLFRVIDNRLQ---DQYSMEEACKVATLALRCLTFEIKLRPNMNEVVSHLEHIQ 355          
The following BLAST results are available for this feature:
BLAST of CB250342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 304
Match NameE-valueIdentityDescription
WAK4_ARATH7.219e-3443.09Wall-associated receptor kinase 4 OS=Arabidopsis t... [more]
RLK6_ARATH7.219e-3443.30Receptor-like protein kinase At3g21340 OS=Arabidop... [more]
NORK_PEA7.219e-3440.61Nodulation receptor kinase OS=Pisum sativum GN=NOR... [more]
ACCR4_ARATH7.219e-3440.61Serine/threonine-protein kinase-like protein CCR4 ... [more]
WAKLE_ARATH1.231e-3344.09Wall-associated receptor kinase-like 5 OS=Arabidop... [more]
NORK_MEDTR1.608e-3340.61Nodulation receptor kinase OS=Medicago truncatula ... [more]
Y1518_ARATH2.743e-3340.45Probable LRR receptor-like serine/threonine-protei... [more]
ACR4_ARATH3.583e-3341.21Serine/threonine-protein kinase-like protein ACR4 ... [more]
WAKLL_ARATH4.679e-3344.16Putative wall-associated receptor kinase-like 13 O... [more]
APK1B_ARATH6.111e-3343.56Protein kinase APK1B, chloroplastic OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionEST0132 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ196 similar to putative protein kinase (acc# AAL91622), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250342 ID=CB250342; Name=CB250342; organism=Citrus sinensis; type=EST; length=705bp
GCTCTGTGTCAGCATCTGCAAAGAGAGAGAGGAAGTGGACTTCCTTGGAC
AATACGGCTTACCATAGCCACTGAGACTGCTCAAGCAATTGCCTATCTTC
ACTCAGCTATGAATCCACCAATTTACCACCGAGACATCAAATCCAGCAAT
ATACTATTGGATTACAACTATAGGTCAAAGGTAGCGGATTTTGGGCTTTC
CAGACTTGGCATGACTGAGTCATCCCACATCTCAACTGCTCCACAAGGAA
CTCCAGGCTACCTTGATCCTCAATACCATCAGTATTTCCATCTTTCTGAC
AAAAGTGATGTTTACAGTTTTGGGGTAGTTCTTATTGAGATCATAACTGC
ACTGAAAGTGGTTGATTTTTCTCGCCCTCACAGTGAGGTGAATTTGGCTG
CACTTGCTATTGATAGGATTGGAAGAGGTTGTGTGGATGAGATAATAGAT
CCATACCTTGAGCCACATAGGGATGCGTGGACACTCTCATCCATTCACAA
TGTTGCTGAGCTAGCATTTAGATGCCTTGCGTTTCATAGGGACATGAGGC
CTACTATGATGGAAGTGGCAGAAGAGCTAGAACACATCAGGGTCAGTTCA
TGGGCTTCAAATATTTATATGGGCTCACCCGCAGTGTCTTGTTGTTCATT
ATCGGAATGCGGAAGTGAGAGATCACTGAGTGGCTTGACAGTTAAGAAGG
CAGGG
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