CB250342

Overview
NameCB250342
Unique NameCB250342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB250342_ssr22 microsatellite CB250342_ssr22:22..31. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig118 contig Csv1_Contig118:1..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250342 vs. ExPASy Swiss-Prot
Match: SHKD_DICDI (Dual specificity protein kinase shkD OS=Dictyostelium discoideum GN=shkD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 37/98 (37.76%), Postives = 59/98 (60.20%), Query Frame = 1
Query:   55 RLTIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRLGMTESSHISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIIT 348
            R+ +A + A  + +LH      I H D+K++N+L+D N R KV DFG S++   E      A +GTP ++ P+       ++K+DVYSFG++L EI+T
Sbjct:  376 RMQMAKDAALGMNWLHGITR--IVHNDLKTANLLVDINLRVKVTDFGFSQIKEGEEFQ-DKAAKGTPLWMAPEVMMGNPYNEKADVYSFGIILWEILT 470          
BLAST of CB250342 vs. ExPASy Swiss-Prot
Match: LIMK1_MOUSE (LIM domain kinase 1 OS=Mus musculus GN=Limk1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 57/200 (28.50%), Postives = 87/200 (43.50%), Query Frame = 1
Query:   34 SGLPWTIRLTIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRLGMTESSHISTAPQ-------------GTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIITALKVVDFSRPHSEVNLAALAIDRIGRGCVDEIIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELEHIRV 594
            S  PW+ R++ A + A  +AYLHS MN  I HRD+ S N L+  N    VADFGL+RL + E +                    G P ++ P+        +K DV+SFG+VL EII  +       P +      +      RG +D    P   P           +   +  RC     + RP+ +++ + LE +R+
Sbjct:  430 SQYPWSQRVSFAKDIASGMAYLHS-MN--IIHRDLNSHNCLVRENRNVVVADFGLARLMIDEKNQSEDLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRT------MDFGLNVRGFLDRYCPPNCPP-----------SFFPITVRCCDLDPEKRPSFVKLEQWLETLRM 609          
BLAST of CB250342 vs. ExPASy Swiss-Prot
Match: ARAF_HUMAN (A-Raf proto-oncogene serine/threonine-protein kinase OS=Homo sapiens GN=ARAF PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 55/189 (29.10%), Postives = 88/189 (46.56%), Query Frame = 1
Query:   58 LTIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRLGMTES-SHISTAPQGTPGYL--------DPQYHQYFHLSDKSDVYSFGVVLIEIITALKVVDFSRPHSEVNLAALAIDRIGRGCVDEIIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELEHIRVS 597
            + +A +TAQ + YLH+     I HRD+KS+NI L      K+ DFGL+ +    S +     P G+  ++        DP  + +     +SDVY++GVVL E++T       S P+S +      I  +GRG        YL P     + +    +  L   CL F R+ RP   ++   +E ++ S
Sbjct:  407 IDVARQTAQGMDYLHAKN---IIHRDLKSNNIFLHEGLTVKIGDFGLATVKTRWSGAQPLEQPSGSVLWMAAEVIRMQDPNPYSF-----QSDVYAYGVVLYELMTG------SLPYSHIGCRDQIIFMVGRG--------YLSPDLSKISSNCPKAMRRLLSDCLKFQREERPLFPQILATIELLQRS 573          
BLAST of CB250342 vs. ExPASy Swiss-Prot
Match: ARAF_PIG (A-Raf proto-oncogene serine/threonine-protein kinase OS=Sus scrofa GN=ARAF PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 55/189 (29.10%), Postives = 88/189 (46.56%), Query Frame = 1
Query:   58 LTIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRLGMTES-SHISTAPQGTPGYL--------DPQYHQYFHLSDKSDVYSFGVVLIEIITALKVVDFSRPHSEVNLAALAIDRIGRGCVDEIIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELEHIRVS 597
            + +A +TAQ + YLH+     I HRD+KS+NI L      K+ DFGL+ +    S +     P G+  ++        DP  + +     +SDVY++GVVL E++T       S P+S +      I  +GRG        YL P     + +    +  L   CL F R+ RP   ++   +E ++ S
Sbjct:  407 IDVARQTAQGMDYLHAKN---IIHRDLKSNNIFLHEGLTVKIGDFGLATVKTRWSGAQPLEQPSGSVLWMAAEVIRMQDPNPYSF-----QSDVYAYGVVLYELMTG------SLPYSHIGSRDQIIFMVGRG--------YLSPDLSKISSNCPKAMRRLLSDCLKFQREERPLFPQILATIELLQRS 573          
The following BLAST results are available for this feature:
BLAST of CB250342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 304
Match NameE-valueIdentityDescription
SHKD_DICDI6.575e-1137.76Dual specificity protein kinase shkD OS=Dictyostel... [more]
LIMK1_MOUSE6.575e-1128.50LIM domain kinase 1 OS=Mus musculus GN=Limk1 PE=1 ... [more]
ARAF_HUMAN6.575e-1129.10A-Raf proto-oncogene serine/threonine-protein kina... [more]
ARAF_PIG8.587e-1129.10A-Raf proto-oncogene serine/threonine-protein kina... [more]

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Properties
Property NameValue
Genbank descriptionEST0132 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ196 similar to putative protein kinase (acc# AAL91622), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250342 ID=CB250342; Name=CB250342; organism=Citrus sinensis; type=EST; length=705bp
GCTCTGTGTCAGCATCTGCAAAGAGAGAGAGGAAGTGGACTTCCTTGGAC
AATACGGCTTACCATAGCCACTGAGACTGCTCAAGCAATTGCCTATCTTC
ACTCAGCTATGAATCCACCAATTTACCACCGAGACATCAAATCCAGCAAT
ATACTATTGGATTACAACTATAGGTCAAAGGTAGCGGATTTTGGGCTTTC
CAGACTTGGCATGACTGAGTCATCCCACATCTCAACTGCTCCACAAGGAA
CTCCAGGCTACCTTGATCCTCAATACCATCAGTATTTCCATCTTTCTGAC
AAAAGTGATGTTTACAGTTTTGGGGTAGTTCTTATTGAGATCATAACTGC
ACTGAAAGTGGTTGATTTTTCTCGCCCTCACAGTGAGGTGAATTTGGCTG
CACTTGCTATTGATAGGATTGGAAGAGGTTGTGTGGATGAGATAATAGAT
CCATACCTTGAGCCACATAGGGATGCGTGGACACTCTCATCCATTCACAA
TGTTGCTGAGCTAGCATTTAGATGCCTTGCGTTTCATAGGGACATGAGGC
CTACTATGATGGAAGTGGCAGAAGAGCTAGAACACATCAGGGTCAGTTCA
TGGGCTTCAAATATTTATATGGGCTCACCCGCAGTGTCTTGTTGTTCATT
ATCGGAATGCGGAAGTGAGAGATCACTGAGTGGCTTGACAGTTAAGAAGG
CAGGG
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