CB250343

Overview
NameCB250343
Unique NameCB250343
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length481
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2108 contig Csv1_Contig2108:261..741. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_METBF (Flavoprotein wrbA OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=wrbA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.335e-21
Identity = 59/146 (40.41%), Postives = 77/146 (52.74%), Query Frame = 2
Query:    2 PIIT----PNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHTAGIAKKLKG 424
            P++T     +  A AD  +FG PTR+G M AQ +   D  GGLW    L GK   +F              LT    L+H GMI V + Y+       M+++ GGSPYGA T AG + +RQP+E EL  A +QG+H   IAKKL G
Sbjct:   64 PVVTRSMYEDVFAGADALIFGTPTRYGNMTAQMRTVFDGLGGLWSRDALVGKVGSVFTSSGTQHGGQESTILTTHVTLLHLGMIIVGLPYS-ETRQRRMDEITGGSPYGASTIAGAEENRQPSENELAMARYQGRHVTQIAKKLIG 208          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_GLUDA (Flavoprotein wrbA OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=wrbA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.335e-21
Identity = 57/140 (40.71%), Postives = 74/140 (52.86%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTF-AGDGSRQPTELELEQAFHQGKHTAGIAKKL 418
            PI TP +L   D  + G PTRFG MA+Q  +F D TGGLW    L GK    F               + IT L+H GM+   + Y F  G   ++++ GG+PYGA T  AGDGSR  ++ E + A   G+H A IA KL
Sbjct:   59 PIATPADLEAYDAIIVGTPTRFGRMASQMASFWDQTGGLWMKGALIGKVGAAFTSTATQHGGQETTLFSVITNLLHQGMVISGLPYNF-QGQMRLDEITGGAPYGATTIAAGDGSRAVSDNERDGARFLGQHVAQIAAKL 197          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_DIAST (Flavoprotein wrbA OS=Diaphorobacter sp. (strain TPSY) GN=wrbA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.335e-21
Identity = 58/142 (40.85%), Postives = 74/142 (52.11%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHTAGIAKKLKG 424
            P+ T  EL   D  + G PTRFG M +Q  +FLD  GGLW    L GK    F               + IT L+H GM+ V + Y+F  G   +++V GG+PYGA T A G G RQP+  EL+ A  QG+  A  A KL G
Sbjct:   59 PVATVTELENYDAIIVGAPTRFGRMPSQMGSFLDQAGGLWARGALNGKVGAAFTSTATQHGGQETTLFSIITNLLHFGMVIVGLPYSF-QGQMTLDEVVGGAPYGATTIAGGQGQRQPSATELDGARFQGRLVAETANKLFG 199          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_RHOP2 (Flavoprotein wrbA OS=Rhodopseudomonas palustris (strain HaA2) GN=wrbA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.050e-21
Identity = 59/142 (41.55%), Postives = 75/142 (52.82%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTF-AGDGSRQPTELELEQAFHQGKHTAGIAKKLKG 424
            P+ T ++LA  D  + G  TRFG MA+Q   FLD  GGLW    L GK  G F               + IT L+H GM+ V + Y F  G   + ++ GG+PYGA T   GDG+RQP+  EL  A +QGK  A  A KL G
Sbjct:   59 PVATIDDLANYDAIIVGTGTRFGRMASQMANFLDQAGGLWAKGALNGKVGGAFTSTATQHGGQETTLFSIITNLLHFGMVVVGLNYGF-QGQMTLGEITGGAPYGATTLTGGDGARQPSANELAGARYQGKTIAETAIKLHG 199          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: CLAH7_CLAHE (Minor allergen Cla h 7 OS=Cladosporium herbarum GN=CLAH7 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.404e-20
Identity = 55/125 (44.00%), Postives = 75/125 (60.00%), Query Frame = 2
Query:    5 IITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGY--TFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELE 370
            I  P  L + D F  G PTR+G   AQ++ F D TGG W+T    GK AG+F             AL A++ L HHG+I+VP+GY  TF   + +  +V+G + +GAGTF+ GDGSRQP++ ELE
Sbjct:   63 ITDPFILEQYDRFPHGHPTRYGNFPAQWRTFWDRTGGQWQTGAFWGKYAGLFISTGTQGGGQESTALAAMSTLSHHGIIYVPLGYKTTFHL-LGDNSEVRGAAVWGAGTFSGGDGSRQPSQKELE 186          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: RFS1_YEAST (Protein RFS1 OS=Saccharomyces cerevisiae GN=RFS1 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.557e-17
Identity = 53/133 (39.85%), Postives = 74/133 (55.64%), Query Frame = 2
Query:    5 IITPNELAEADGFVFGFPTRFGTMAAQFKAFLDA-TGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXA-LTAITQLVHHGMIFVPIGYTFG-AGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGK 391
            I+T   L E D ++FG PT+FG   A++K+F D+ TGGLW    L GK AG+F               + A++ LVHHG+I+VP+GY      + ++E V G   +GAG  +G DG R P+  EL     QGK
Sbjct:   69 ILTRETLVEYDYYLFGIPTKFGNFPAEWKSFWDSNTGGLWAKGSLHGKIAGLFVSGAISGKGDTEMCIMNAMSTLVHHGVIYVPLGYKNAYKELTDVEDVNGSCAWGAGCVSGIDGGRPPSLSELRVHQLQGK 201          
The following BLAST results are available for this feature:
BLAST of CB250343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
WRBA_METBF2.335e-2140.41Flavoprotein wrbA OS=Methanosarcina barkeri (strai... [more]
WRBA_GLUDA2.335e-2140.71Flavoprotein wrbA OS=Gluconacetobacter diazotrophi... [more]
WRBA_DIAST2.335e-2140.85Flavoprotein wrbA OS=Diaphorobacter sp. (strain TP... [more]
WRBA_RHOP23.050e-2141.55Flavoprotein wrbA OS=Rhodopseudomonas palustris (s... [more]
CLAH7_CLAHE4.404e-2044.00Minor allergen Cla h 7 OS=Cladosporium herbarum GN... [more]
RFS1_YEAST4.557e-1739.85Protein RFS1 OS=Saccharomyces cerevisiae GN=RFS1 P... [more]

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Properties
Property NameValue
Genbank descriptionEST0133 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ197 similar to 1,4-benzoquinone reductase (acc# NP_194457), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250343 ID=CB250343; Name=CB250343; organism=Citrus sinensis; type=EST; length=481bp
ACCTATTATTACCCCCAACGAACTTGCTGAGGCTGATGGGTTTGTTTTTG
GCTTCCCAACAAGATTTGGAACGATGGCTGCTCAATTTAAAGCATTTTTA
GATGCTACTGGTGGTCTATGGAGGACACAACAGCTCGCTGGCAAACCTGC
TGGGATGTTCTACAGCACTGGGTCACAAGGTGGTGGACAAGAGACTACAG
CGTTGACGGCAATTACTCAGCTTGTTCACCATGGGATGATATTTGTTCCT
ATTGGATACACATTTGGTGCTGGCATGTTTGAGATGGAGAAAGTGAAAGG
TGGAAGTCCCTACGGTGCAGGAACTTTTGCTGGAGACGGCTCGAGACAGC
CAACTGAGCTTGAGTTGGAGCAAGCTTTCCACCAGGGAAAACACACTGCG
GGCATTGCAAAGAAGCTGAAGGGAAGTGCTTAAATATTTCAATTTACAAT
ACAACCATTAGGTGGACTTATTCCATTCTTT
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