CB250343

Overview
NameCB250343
Unique NameCB250343
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length481
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2108 contig Csv1_Contig2108:261..741. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_YERPE (Flavoprotein wrbA OS=Yersinia pestis GN=wrbA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.043e-29
Identity = 70/142 (49.30%), Postives = 86/142 (60.56%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHTAGIAKKLKG 424
            P+ TP+ELA+ DG +FG PTRFG M+ Q + FLD TGGLW +  L GK A +F               T  T L HHG I VPIGY     +F++ + +GG+PYGA T A GDGSRQP+  EL  A  QG+H A I  KLKG
Sbjct:   60 PVATPHELADYDGIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKVASVFASTGTGGGQEHTITST-WTTLAHHGFIIVPIGYG-AKELFDVSQTRGGTPYGATTIAGGDGSRQPSAEELAIARFQGEHVAKITAKLKG 199          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_YERPB (Flavoprotein wrbA OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=wrbA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.043e-29
Identity = 70/142 (49.30%), Postives = 86/142 (60.56%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHTAGIAKKLKG 424
            P+ TP+ELA+ DG +FG PTRFG M+ Q + FLD TGGLW +  L GK A +F               T  T L HHG I VPIGY     +F++ + +GG+PYGA T A GDGSRQP+  EL  A  QG+H A I  KLKG
Sbjct:   60 PVATPHELADYDGIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKVASVFASTGTGGGQEHTITST-WTTLAHHGFIIVPIGYG-AKELFDVSQTRGGTPYGATTIAGGDGSRQPSAEELAIARFQGEHVAKITAKLKG 199          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_YERPA (Flavoprotein wrbA OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=wrbA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.043e-29
Identity = 70/142 (49.30%), Postives = 86/142 (60.56%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHTAGIAKKLKG 424
            P+ TP+ELA+ DG +FG PTRFG M+ Q + FLD TGGLW +  L GK A +F               T  T L HHG I VPIGY     +F++ + +GG+PYGA T A GDGSRQP+  EL  A  QG+H A I  KLKG
Sbjct:   60 PVATPHELADYDGIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKVASVFASTGTGGGQEHTITST-WTTLAHHGFIIVPIGYG-AKELFDVSQTRGGTPYGATTIAGGDGSRQPSAEELAIARFQGEHVAKITAKLKG 199          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_YERP3 (Flavoprotein wrbA OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=wrbA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.043e-29
Identity = 70/142 (49.30%), Postives = 86/142 (60.56%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHTAGIAKKLKG 424
            P+ TP+ELA+ DG +FG PTRFG M+ Q + FLD TGGLW +  L GK A +F               T  T L HHG I VPIGY     +F++ + +GG+PYGA T A GDGSRQP+  EL  A  QG+H A I  KLKG
Sbjct:   60 PVATPHELADYDGIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKVASVFASTGTGGGQEHTITST-WTTLAHHGFIIVPIGYG-AKELFDVSQTRGGTPYGATTIAGGDGSRQPSAEELAIARFQGEHVAKITAKLKG 199          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_METPB (Flavoprotein wrbA OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=wrbA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.043e-29
Identity = 69/142 (48.59%), Postives = 86/142 (60.56%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHTAGIAKKLKG 424
            PI T  ELA+ D  +FG PTR+G MA+Q K F+D TGGLW    L GK    F               +  T + HHGM+ V + Y+F AG   +E+VKG SPYGA T A GDGSRQP+++EL+ A  QG+H AGIA KL G
Sbjct:   59 PIATVEELADYDAIIFGTPTRYGNMASQMKQFIDQTGGLWAKGALVGKVGSAFTSTASQHGGQETTLTSFHTVMFHHGMVVVGLPYSF-AGQNGVEQVKGNSPYGATTIADGDGSRQPSQVELDGARFQGRHVAGIAAKLAG 199          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_GEOSF (Flavoprotein wrbA OS=Geobacter sp. (strain FRC-32) GN=wrbA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.043e-29
Identity = 70/140 (50.00%), Postives = 82/140 (58.57%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHTAGIAKKL 418
            PI T +ELAEAD  +FG PTRFG M  Q + FLDATGGLW    L GK   +F              L+  T L+HHGM+ V + Y F  G    +++ GGSPYGA T AG  G RQPTE EL  A +QGKH A IA KL
Sbjct:   63 PICTVDELAEADAVIFGSPTRFGNMCGQMRQFLDATGGLWVKGSLIGKVGSVFASSNTQHGGQESTILSFHTTLLHHGMVIVGLPYAF-QGQMRNDEITGGSPYGASTVAGTQGERQPTENELAAARYQGKHVASIAYKL 201          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_AGRRK (Flavoprotein wrbA OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=wrbA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.043e-29
Identity = 71/140 (50.71%), Postives = 85/140 (60.71%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHTAGIAKKL 418
            PI TP+ELAE D  + G  TRFGT+A+Q + F D TGGLW + +L GK   +F              L  I  L+HHGM  V + Y F AG    E+VKGGSPYGA T   GDGSRQP+E+ELE A +QG H A IA KL
Sbjct:   59 PIATPDELAEYDAIIVGAGTRFGTVASQMRNFWDQTGGLWFSGKLVGKVGSVFTSSATQHGGQESTILGFIPTLLHHGMAVVGLPYAF-AGQMGTEEVKGGSPYGASTITNGDGSRQPSEIELEAAKYQGAHVAKIAAKL 197          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_TOLAT (Flavoprotein wrbA OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=wrbA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 5.190e-29
Identity = 72/142 (50.70%), Postives = 83/142 (58.45%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHTAGIAKKLKG 424
            P+ TP EL + D  +FG PTRFG M AQ + FLD TGGLW    L GK A +F               T  T L HHGM+ VPIGY   A MF++  V GG+PYGA T A GDGSRQP   EL  A  QGKH A +A K+KG
Sbjct:   60 PVATPAELVDYDAIIFGVPTRFGNMTAQMRNFLDQTGGLWAKGALFGKIASVFASTGVGGGQEMTITST-WTTLAHHGMVIVPIGYG-TAEMFDISHVGGGTPYGATTLAGGDGSRQPDARELAIARFQGKHVATVAAKMKG 199          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_SERP5 (Flavoprotein wrbA OS=Serratia proteamaculans (strain 568) GN=wrbA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 8.853e-29
Identity = 68/141 (48.23%), Postives = 85/141 (60.28%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHTAGIAKKLK 421
            P+ +P ELA+ DG +FG PTRFG MA Q + FLD TGGLW +  L GK  G  +              +  T L HHG I VPIGY     +F++  V+GG+PYGA T A GDGSRQP++ EL  A +QG+H A I  KLK
Sbjct:   60 PVASPQELADYDGIIFGTPTRFGNMAGQMRTFLDQTGGLWASGALYGK-VGSVFSSTGTGGGQEHTITSTWTTLAHHGFIIVPIGYA-TPELFDVSHVRGGTPYGATTIAGGDGSRQPSQEELTIARYQGEHVAKITAKLK 198          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_DESMR (Flavoprotein wrbA OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=wrbA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 8.853e-29
Identity = 66/141 (46.81%), Postives = 85/141 (60.28%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHTAGIAKKLK 421
            P  T  EL +AD  VFG PTRFG M  Q + FLDATG +W    L GKP G+F              ++ I  L+HHGMI V + Y+F AG   +++V GGSPYGA T A GDGSR P+E EL+ A  QG+H A + ++L+
Sbjct:   63 PACTLEELEDADAIVFGTPTRFGNMCGQMRQFLDATGQIWMRGGLVGKPGGVFCSTATQHGGQETTLMSFIQTLLHHGMIVVGLPYSF-AGQMRLDEVTGGSPYGATTIAGGDGSRMPSENELDAARFQGRHIADVTRRLR 202          
The following BLAST results are available for this feature:
BLAST of CB250343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
WRBA_YERPE3.043e-2949.30Flavoprotein wrbA OS=Yersinia pestis GN=wrbA PE=3 ... [more]
WRBA_YERPB3.043e-2949.30Flavoprotein wrbA OS=Yersinia pseudotuberculosis s... [more]
WRBA_YERPA3.043e-2949.30Flavoprotein wrbA OS=Yersinia pestis bv. Antiqua (... [more]
WRBA_YERP33.043e-2949.30Flavoprotein wrbA OS=Yersinia pseudotuberculosis s... [more]
WRBA_METPB3.043e-2948.59Flavoprotein wrbA OS=Methylobacterium populi (stra... [more]
WRBA_GEOSF3.043e-2950.00Flavoprotein wrbA OS=Geobacter sp. (strain FRC-32)... [more]
WRBA_AGRRK3.043e-2950.71Flavoprotein wrbA OS=Agrobacterium radiobacter (st... [more]
WRBA_TOLAT5.190e-2950.70Flavoprotein wrbA OS=Tolumonas auensis (strain DSM... [more]
WRBA_SERP58.853e-2948.23Flavoprotein wrbA OS=Serratia proteamaculans (stra... [more]
WRBA_DESMR8.853e-2946.81Flavoprotein wrbA OS=Desulfovibrio magneticus (str... [more]

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Properties
Property NameValue
Genbank descriptionEST0133 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ197 similar to 1,4-benzoquinone reductase (acc# NP_194457), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250343 ID=CB250343; Name=CB250343; organism=Citrus sinensis; type=EST; length=481bp
ACCTATTATTACCCCCAACGAACTTGCTGAGGCTGATGGGTTTGTTTTTG
GCTTCCCAACAAGATTTGGAACGATGGCTGCTCAATTTAAAGCATTTTTA
GATGCTACTGGTGGTCTATGGAGGACACAACAGCTCGCTGGCAAACCTGC
TGGGATGTTCTACAGCACTGGGTCACAAGGTGGTGGACAAGAGACTACAG
CGTTGACGGCAATTACTCAGCTTGTTCACCATGGGATGATATTTGTTCCT
ATTGGATACACATTTGGTGCTGGCATGTTTGAGATGGAGAAAGTGAAAGG
TGGAAGTCCCTACGGTGCAGGAACTTTTGCTGGAGACGGCTCGAGACAGC
CAACTGAGCTTGAGTTGGAGCAAGCTTTCCACCAGGGAAAACACACTGCG
GGCATTGCAAAGAAGCTGAAGGGAAGTGCTTAAATATTTCAATTTACAAT
ACAACCATTAGGTGGACTTATTCCATTCTTT
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