CB250343

Overview
NameCB250343
Unique NameCB250343
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length481
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2108 contig Csv1_Contig2108:261..741. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_GEOMG (Flavoprotein wrbA OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=wrbA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.510e-28
Identity = 69/142 (48.59%), Postives = 84/142 (59.15%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHTAGIAKKLKG 424
            P+ T +ELA AD  +FG PTRFG M  Q + FLDATGGLW    L GK  G+F              LT  T L+H GM+ V + Y F AG   ++++ GGSPYGA T A G G R P+E EL  A +QGK+ A IA KLKG
Sbjct:   63 PVCTVDELAAADAIIFGTPTRFGNMCGQMRQFLDATGGLWVKGGLVGKAGGVFTSSATQHGGQESTILTFHTFLLHQGMVLVGLPYAF-AGQMRIDEITGGSPYGASTIAGGQGERLPSENELAGARYQGKYIAEIAAKLKG 203          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_ALHEH (Flavoprotein wrbA OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=wrbA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.510e-28
Identity = 66/142 (46.48%), Postives = 85/142 (59.86%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHTAGIAKKLKG 424
            P+  P ELA+ DG +FG PTRFG MA Q + FLD TGGLW   +L GK   +F               +  T L+HHGM+ V + Y+  A +  M+++ GG+PYGA T AG DGSRQP+E EL  A  QG+H A I +KL G
Sbjct:   59 PVARPEELADYDGIIFGSPTRFGNMAGQMRNFLDQTGGLWAQGKLIGKVGSVFTSTGSQHGGQETTLTSMQTTLMHHGMVIVGVPYSC-AALTNMDEITGGTPYGASTLAGPDGSRQPSENELTIARFQGRHVAEITQKLAG 199          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_MARAV (Flavoprotein wrbA OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=wrbA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.972e-28
Identity = 68/142 (47.89%), Postives = 83/142 (58.45%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHTAGIAKKLKG 424
            P+  P ELA+ D  +FG PTRFG MA Q + FLD TGGLW   +L GK  G  +              +  T L HHGM+ VP+GY      F++ +V GG+PYGA T A GDGSRQP+E EL  A  QGKH A +A KL G
Sbjct:   60 PVADPKELADYDAIIFGTPTRFGNMAGQMRTFLDQTGGLWAEGKLHGK-VGSVFTSTGTGGGQEQTITSFWTTLAHHGMVLVPLGYGI-PEFFDISEVNGGTPYGASTIAGGDGSRQPSEKELAIARFQGKHVAELAIKLHG 199          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_METRJ (Flavoprotein wrbA OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=wrbA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 5.738e-28
Identity = 67/140 (47.86%), Postives = 83/140 (59.29%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHTAGIAKKL 418
            P+ T  ELA+ D  +FG PTR+G MA+Q K F+D TGGLW    L GK   +F               +  T L HHGM+ V + Y+F  G   +E VKG +PYGA T A GDGSRQP+ +ELE A  QG+H AGIA KL
Sbjct:   59 PVATVAELADYDAIIFGTPTRYGNMASQMKQFIDQTGGLWMKGALVGKVGSVFTSTASQHGGQETTLTSFHTVLFHHGMVVVGLPYSF-QGQAGVEAVKGNTPYGASTIADGDGSRQPSAVELEGARFQGRHVAGIAAKL 197          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_METS4 (Flavoprotein wrbA OS=Methylobacterium sp. (strain 4-46) GN=wrbA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 7.494e-28
Identity = 66/142 (46.48%), Postives = 83/142 (58.45%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHTAGIAKKLKG 424
            P+   +EL   D  +FG PTR+G MA+Q K FLD TGGLW    L GK   +F              L+  T L+HHGM+ V + Y F  G   + +V G SPYGA T A GDGSRQP+ +EL+ A +QG+H AGIA KL G
Sbjct:   59 PLARVDELPNYDAIIFGTPTRYGNMASQMKNFLDQTGGLWMKGALVGKVGSVFTSSASQHGGQESTILSFHTVLLHHGMVLVGLPYAF-QGQLGVSQVMGNSPYGASTIADGDGSRQPSPIELDGARYQGRHVAGIAAKLAG 199          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_GEOSL (Flavoprotein wrbA OS=Geobacter sulfurreducens GN=wrbA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.278e-27
Identity = 67/142 (47.18%), Postives = 83/142 (58.45%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHTAGIAKKLKG 424
            P+ T +ELA AD  +FG PTRFG M  Q + FLDATGGLW    L GK AG+F              LT  T L+H GM+ V + Y F AG   ++++ GGSPYGA T A G G R P+E +L  A  QG++ A IA KL G
Sbjct:   63 PVATVDELASADAIIFGTPTRFGNMCGQMRQFLDATGGLWVKGSLVGKAAGVFTSSATQHGGQESTILTFHTFLLHQGMVIVGLPYAF-AGQTRIDEITGGSPYGASTIAGGQGERLPSENDLAGARFQGRYVAQIAAKLNG 203          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_YERE8 (Flavoprotein wrbA OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=wrbA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.670e-27
Identity = 68/140 (48.57%), Postives = 82/140 (58.57%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHTAGIAKKL 418
            P+ TP ELA+  G +FG PTRFG MA Q + FLD TGGLW +  L GK A +F               T  T L HHG I VPIGY     +F++ + +GG+PYGA T A GDGSRQP+  EL  A  QG+H A I  KL
Sbjct:   60 PVATPQELADYHGIIFGTPTRFGNMAGQMRTFLDQTGGLWASGALYGKVASVFASTGTGGGQEHTITST-WTTLAHHGFIIVPIGYG-ATELFDVSQTRGGTPYGATTIAGGDGSRQPSAEELAIARFQGEHVAKITAKL 197          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_BURPP (Flavoprotein wrbA OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=wrbA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.181e-27
Identity = 64/142 (45.07%), Postives = 84/142 (59.15%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHTAGIAKKLKG 424
            P+ TP+ELA  D  +FG PTRFG MA Q + FLD TGGLW    L GK   +F               +  + L+H GM+ V + Y+  AG+  M ++ GG+PYGA T AG DGSRQP++ EL+ A  QGKH A +A K+ G
Sbjct:   60 PVATPDELANYDAIIFGTPTRFGNMAGQMRTFLDQTGGLWMKGALVGKIGSVFASTGTQHGGQETTITSFHSTLLHQGMVIVGVPYSC-AGLVNMTEITGGTPYGATTLAGADGSRQPSQNELDIARFQGKHVASLALKIAG 200          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_BURVG (Flavoprotein wrbA OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=wrbA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.848e-27
Identity = 64/140 (45.71%), Postives = 84/140 (60.00%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHTAGIAKKL 418
            P+ T +ELA  D  +FG PTRFG MA Q + FLD TGGLW    L GK   +F               +  T L+HHGM+ V + Y   +G+ +M+++ GG+PYGA T AG DGSRQP+  EL+ A +QGKH A +A KL
Sbjct:   60 PVATVDELANYDAIIFGTPTRFGNMAGQMRTFLDQTGGLWMKGALVGKIGSVFASTGTQHGGQETTITSFHTTLLHHGMVIVGVPYAC-SGLVDMKEITGGTPYGATTLAGADGSRQPSANELDIARYQGKHVAQLAAKL 198          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_BURCJ (Flavoprotein wrbA OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=wrbA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.848e-27
Identity = 64/140 (45.71%), Postives = 83/140 (59.29%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHTAGIAKKL 418
            P+ T +ELA+ D  +FG PTRFG MA Q + FLD TGGLW    L GK   +F               +  T L+HHGM+ V + Y   +G+  M ++ GG+PYGA T AG DGSRQP+  EL+ A +QGKH A +A KL
Sbjct:   60 PVATVDELADYDAIIFGTPTRFGNMAGQMRTFLDQTGGLWMKGALVGKIGSVFASTGTQHGGQETTITSFHTTLLHHGMVIVGVPYAC-SGLVNMNEITGGTPYGATTLAGADGSRQPSANELDIARYQGKHVAELANKL 198          
The following BLAST results are available for this feature:
BLAST of CB250343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
WRBA_GEOMG1.510e-2848.59Flavoprotein wrbA OS=Geobacter metallireducens (st... [more]
WRBA_ALHEH1.510e-2846.48Flavoprotein wrbA OS=Alkalilimnicola ehrlichei (st... [more]
WRBA_MARAV1.972e-2847.89Flavoprotein wrbA OS=Marinobacter aquaeolei (strai... [more]
WRBA_METRJ5.738e-2847.86Flavoprotein wrbA OS=Methylobacterium radiotoleran... [more]
WRBA_METS47.494e-2846.48Flavoprotein wrbA OS=Methylobacterium sp. (strain ... [more]
WRBA_GEOSL1.278e-2747.18Flavoprotein wrbA OS=Geobacter sulfurreducens GN=w... [more]
WRBA_YERE81.670e-2748.57Flavoprotein wrbA OS=Yersinia enterocolitica serot... [more]
WRBA_BURPP2.181e-2745.07Flavoprotein wrbA OS=Burkholderia phytofirmans (st... [more]
WRBA_BURVG2.848e-2745.71Flavoprotein wrbA OS=Burkholderia vietnamiensis (s... [more]
WRBA_BURCJ2.848e-2745.71Flavoprotein wrbA OS=Burkholderia cepacia (strain ... [more]

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Properties
Property NameValue
Genbank descriptionEST0133 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ197 similar to 1,4-benzoquinone reductase (acc# NP_194457), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250343 ID=CB250343; Name=CB250343; organism=Citrus sinensis; type=EST; length=481bp
ACCTATTATTACCCCCAACGAACTTGCTGAGGCTGATGGGTTTGTTTTTG
GCTTCCCAACAAGATTTGGAACGATGGCTGCTCAATTTAAAGCATTTTTA
GATGCTACTGGTGGTCTATGGAGGACACAACAGCTCGCTGGCAAACCTGC
TGGGATGTTCTACAGCACTGGGTCACAAGGTGGTGGACAAGAGACTACAG
CGTTGACGGCAATTACTCAGCTTGTTCACCATGGGATGATATTTGTTCCT
ATTGGATACACATTTGGTGCTGGCATGTTTGAGATGGAGAAAGTGAAAGG
TGGAAGTCCCTACGGTGCAGGAACTTTTGCTGGAGACGGCTCGAGACAGC
CAACTGAGCTTGAGTTGGAGCAAGCTTTCCACCAGGGAAAACACACTGCG
GGCATTGCAAAGAAGCTGAAGGGAAGTGCTTAAATATTTCAATTTACAAT
ACAACCATTAGGTGGACTTATTCCATTCTTT
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