CB250343

Overview
NameCB250343
Unique NameCB250343
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length481
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_BURCH (Flavoprotein wrbA OS=Burkholderia cenocepacia (strain HI2424) GN=wrbA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.848e-27
Identity = 64/140 (45.71%), Postives = 83/140 (59.29%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHTAGIAKKL 418
            P+ T +ELA+ D  +FG PTRFG MA Q + FLD TGGLW    L GK   +F               +  T L+HHGM+ V + Y   +G+  M ++ GG+PYGA T AG DGSRQP+  EL+ A +QGKH A +A KL
Sbjct:   60 PVATVDELADYDAIIFGTPTRFGNMAGQMRTFLDQTGGLWMKGALVGKIGSVFASTGTQHGGQETTITSFHTTLLHHGMVIVGVPYAC-SGLVNMSEITGGTPYGATTLAGADGSRQPSANELDIARYQGKHVAELASKL 198          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_BURCC (Flavoprotein wrbA OS=Burkholderia cenocepacia (strain MC0-3) GN=wrbA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.848e-27
Identity = 64/140 (45.71%), Postives = 83/140 (59.29%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHTAGIAKKL 418
            P+ T +ELA+ D  +FG PTRFG MA Q + FLD TGGLW    L GK   +F               +  T L+HHGM+ V + Y   +G+  M ++ GG+PYGA T AG DGSRQP+  EL+ A +QGKH A +A KL
Sbjct:   60 PVATVDELADYDAIIFGTPTRFGNMAGQMRTFLDQTGGLWMKGALVGKIGSVFASTGTQHGGQETTITSFHTTLLHHGMVIVGVPYAC-SGLVNMNEITGGTPYGATTLAGADGSRQPSANELDIARYQGKHVAELASKL 198          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_BURCA (Flavoprotein wrbA OS=Burkholderia cenocepacia (strain AU 1054) GN=wrbA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.848e-27
Identity = 64/140 (45.71%), Postives = 83/140 (59.29%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHTAGIAKKL 418
            P+ T +ELA+ D  +FG PTRFG MA Q + FLD TGGLW    L GK   +F               +  T L+HHGM+ V + Y   +G+  M ++ GG+PYGA T AG DGSRQP+  EL+ A +QGKH A +A KL
Sbjct:   60 PVATVDELADYDAIIFGTPTRFGNMAGQMRTFLDQTGGLWMKGALVGKIGSVFASTGTQHGGQETTITSFHTTLLHHGMVIVGVPYAC-SGLVNMSEITGGTPYGATTLAGADGSRQPSANELDIARYQGKHVAELASKL 198          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_AZOSB (Flavoprotein wrbA OS=Azoarcus sp. (strain BH72) GN=wrbA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.848e-27
Identity = 66/142 (46.48%), Postives = 83/142 (58.45%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHTAGIAKKLKG 424
            P+ T  EL + D  +FG PTRFG MA+Q + FLD TGGLW + +L GK   +F               +  T L+HHGM+ V + YT  A    M+++ GGSPYGA T A GDG+RQP+E EL  A  QG H A IA KL G
Sbjct:   59 PVATVGELPDYDAIIFGTPTRFGNMASQMRNFLDQTGGLWMSGKLVGKVGSVFASTATQHGGQETTITSFHTTLLHHGMVIVGLPYT-EARQMNMDEITGGSPYGATTLAKGDGTRQPSENELAMARFQGGHVAKIAAKLAG 199          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA1_RHIME (Flavoprotein wrbA 1 OS=Rhizobium meliloti GN=wrbA1 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.719e-27
Identity = 65/140 (46.43%), Postives = 82/140 (58.57%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTF-AGDGSRQPTELELEQAFHQGKHTAGIAKKL 418
            P+ T  ELA+ D  +FG  TR+GT+A+Q + F+D TGGLW   +L GK    F              L  I  ++HHGM+ V + Y F  G   +E+VKGGSPYGA T   GDGSRQP+ +ELE A  QG H A IA KL
Sbjct:   59 PVATVEELADYDAIIFGAGTRYGTVASQLRNFIDQTGGLWAKGKLVGKVGSAFTSSATQHGGQESTILGLIPTMMHHGMVVVGLPYAF-QGQMGVEEVKGGSPYGASTITGGDGSRQPSAVELEAARFQGAHVARIAAKL 197          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_RHORT (Flavoprotein wrbA OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=wrbA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 6.344e-27
Identity = 66/142 (46.48%), Postives = 83/142 (58.45%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHTAGIAKKLKG 424
            PI + +ELA+ DG + G PTRFG MA Q + FLD TGGLW   +L GK  G F              L+  T  +HHGM+ V + Y     MF+  + + G PYGA T A GDGSRQP++ E   A  QG+H AG+AKKLKG
Sbjct:   63 PIASVDELADYDGILIGTPTRFGNMAGQMRNFLDQTGGLWAKGKLVGKAGGAF-TSTATGGGAETTLLSVYTNFLHHGMVVVGVPYG-TPEMFDTSEARAGGPYGAATLAGGDGSRQPSDKERTIARFQGRHFAGVAKKLKG 202          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_ACICJ (Flavoprotein wrbA OS=Acidiphilium cryptum (strain JF-5) GN=wrbA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 6.344e-27
Identity = 67/142 (47.18%), Postives = 80/142 (56.34%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHTAGIAKKLKG 424
            P+ TP ELA+ D  +FG PTRFG M  Q + FLD TGGLW    L GK   +F               +  T L HHGMI V + Y+    +  M ++ GG+PYGA T AG DGSRQP+  EL  A  QGKH AGIA KL G
Sbjct:   59 PVATPAELADYDAIIFGTPTRFGNMCGQMRNFLDQTGGLWAKGALIGKVGSVFASTGTQHGGQETTITSFHTTLFHHGMIVVGVPYS-NPELTNMNEITGGTPYGATTLAGADGSRQPSANELAIARAQGKHVAGIAAKLAG 199          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_BURM1 (Flavoprotein wrbA OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=wrbA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 8.286e-27
Identity = 64/140 (45.71%), Postives = 83/140 (59.29%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHTAGIAKKL 418
            P+ T +ELA+ D  +FG PTRFG MA Q + FLD TGGLW    L GK   +F               +  T L+HHGM+ V + Y   +G+  M ++ GG+PYGA T AG DGSRQP+  EL+ A +QGKH A +A KL
Sbjct:   60 PVATVDELADYDAILFGTPTRFGNMAGQMRTFLDQTGGLWMKGALVGKIGSVFASTGTQHGGQETTITSFHTTLLHHGMVIVGVPYAC-SGLVNMNEITGGTPYGATTLAGADGSRQPSANELDIARYQGKHVAELAVKL 198          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: P25_SCHPO (P25 protein OS=Schizosaccharomyces pombe GN=obr1 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 8.286e-27
Identity = 65/133 (48.87%), Postives = 85/133 (63.91%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGY--TFGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGK 391
            P++T + L + D F+FG+PTR+GT  AQF+ F D+TGGLW    L GK  G F+            ALTA+T  VHHGMIFVP+GY  TF   M  +E + GGS +GAG++AG DGSR  ++ ELE A  QG+
Sbjct:   62 PVVTLDVLTQYDAFLFGYPTRYGTPPAQFRTFWDSTGGLWVQGALHGKYFGQFFSTGTLGGGQESTALTAMTSFVHHGMIFVPLGYKNTFSL-MANVESIHGGSSWGAGSYAGADGSRNVSDDELEIARIQGE 193          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_RHOCS (Flavoprotein wrbA OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=wrbA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.411e-26
Identity = 65/142 (45.77%), Postives = 83/142 (58.45%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHTAGIAKKLKG 424
            P+ T  ELAE D  + G PTRFG M +Q   FLD TGGLW    L GK    F               + +T L+HHGM+ V + Y++  G+  +E+VKGG+PYGA T A GDGSR+PTE+EL  A +QG   A  A KL+G
Sbjct:   60 PVATVAELAEYDAIIVGSPTRFGRMTSQMANFLDQTGGLWAKGALNGKVGAAFTSTASQHGGQETTLFSILTNLLHHGMVVVGLPYSY-EGLSGVEQVKGGTPYGASTIADGDGSRRPTEVELGGARYQGALVARTAAKLRG 200          
The following BLAST results are available for this feature:
BLAST of CB250343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
WRBA_BURCH2.848e-2745.71Flavoprotein wrbA OS=Burkholderia cenocepacia (str... [more]
WRBA_BURCC2.848e-2745.71Flavoprotein wrbA OS=Burkholderia cenocepacia (str... [more]
WRBA_BURCA2.848e-2745.71Flavoprotein wrbA OS=Burkholderia cenocepacia (str... [more]
WRBA_AZOSB2.848e-2746.48Flavoprotein wrbA OS=Azoarcus sp. (strain BH72) GN... [more]
WRBA1_RHIME3.719e-2746.43Flavoprotein wrbA 1 OS=Rhizobium meliloti GN=wrbA1... [more]
WRBA_RHORT6.344e-2746.48Flavoprotein wrbA OS=Rhodospirillum rubrum (strain... [more]
WRBA_ACICJ6.344e-2747.18Flavoprotein wrbA OS=Acidiphilium cryptum (strain ... [more]
WRBA_BURM18.286e-2745.71Flavoprotein wrbA OS=Burkholderia multivorans (str... [more]
P25_SCHPO8.286e-2748.87P25 protein OS=Schizosaccharomyces pombe GN=obr1 P... [more]
WRBA_RHOCS2.411e-2645.77Flavoprotein wrbA OS=Rhodospirillum centenum (stra... [more]

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Properties
Property NameValue
Genbank descriptionEST0133 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ197 similar to 1,4-benzoquinone reductase (acc# NP_194457), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250343 ID=CB250343; Name=CB250343; organism=Citrus sinensis; type=EST; length=481bp
ACCTATTATTACCCCCAACGAACTTGCTGAGGCTGATGGGTTTGTTTTTG
GCTTCCCAACAAGATTTGGAACGATGGCTGCTCAATTTAAAGCATTTTTA
GATGCTACTGGTGGTCTATGGAGGACACAACAGCTCGCTGGCAAACCTGC
TGGGATGTTCTACAGCACTGGGTCACAAGGTGGTGGACAAGAGACTACAG
CGTTGACGGCAATTACTCAGCTTGTTCACCATGGGATGATATTTGTTCCT
ATTGGATACACATTTGGTGCTGGCATGTTTGAGATGGAGAAAGTGAAAGG
TGGAAGTCCCTACGGTGCAGGAACTTTTGCTGGAGACGGCTCGAGACAGC
CAACTGAGCTTGAGTTGGAGCAAGCTTTCCACCAGGGAAAACACACTGCG
GGCATTGCAAAGAAGCTGAAGGGAAGTGCTTAAATATTTCAATTTACAAT
ACAACCATTAGGTGGACTTATTCCATTCTTT
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