CB250343

Overview
NameCB250343
Unique NameCB250343
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length481
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2108 contig Csv1_Contig2108:261..741. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_BURS3 (Flavoprotein wrbA OS=Burkholderia sp. (strain 383) GN=wrbA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.411e-26
Identity = 63/140 (45.00%), Postives = 82/140 (58.57%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHTAGIAKKL 418
            P+ T +ELA+ D  +FG PTRFG MA Q + FLD TGGLW    L GK   +F               +  T L+HHGM+ V + Y   +G+  M ++ GG+PYGA T AG DGSRQP+  EL+ A +QGK  A +A KL
Sbjct:   60 PVATVDELADYDAIIFGTPTRFGNMAGQMRTFLDQTGGLWMKGALVGKIGSVFASTGTQHGGQETTITSFHTTLLHHGMVIVGVPYAC-SGLVNMNEITGGTPYGATTLAGADGSRQPSANELDIARYQGKRVAELASKL 198          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: YCP4_YEAST (Flavoprotein-like protein YCP4 OS=Saccharomyces cerevisiae GN=YCP4 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 5.371e-26
Identity = 66/141 (46.81%), Postives = 81/141 (57.45%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFG-AGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHTAGIAKKL 418
            P+ T   L E D F+FG PTRFG + AQ+ AF D TGGLW    L GK AG+F                 ++ L HHG+IF+P+GY    A +  +E+V GGSP+GAGT AG DGSR  + LEL  A  QGK     AKKL
Sbjct:   60 PVATEKTLLEYDAFLFGVPTRFGNLPAQWSAFWDKTGGLWAKGSLNGKAAGIFVSTSSYGGGQESTVKACLSYLAHHGIIFLPLGYKNSFAELASIEEVHGGSPWGAGTLAGPDGSRTASPLELRIAEIQGKTFYETAKKL 200          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_RHISN (Flavoprotein wrbA OS=Rhizobium sp. (strain NGR234) GN=wrbA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 5.371e-26
Identity = 61/140 (43.57%), Postives = 81/140 (57.86%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTF-AGDGSRQPTELELEQAFHQGKHTAGIAKKL 418
            P+ T  EL + D  +FG  TR+GT+A+Q + F+D TG LW   +L GK    F              L  I  ++HHGM+ V + Y F  G   ++++KGGSPYGA T   GDGSRQP+E+EL+ A  QG H A IA KL
Sbjct:   59 PVATVEELGDYDAIIFGAGTRYGTVASQLRNFIDQTGSLWAKGKLVGKVGSAFTSSATQHGGQESTILGLIPTMLHHGMVVVGLPYAF-QGQMGIDEIKGGSPYGASTITGGDGSRQPSEIELDAARFQGAHVARIAAKL 197          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_HALHL (Flavoprotein wrbA OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=wrbA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 7.015e-26
Identity = 68/146 (46.58%), Postives = 83/146 (56.85%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQ----LVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHTAGIAKKLKG 424
            P+ +  ELA+ D  +FG PTRFG MA Q + FLD TG LW   QL GK   +F               T IT     L HHGM+ V + Y     + ++  VKGGSPYGAGT A GDGSRQP E EL  A +QG+H A IA++L G
Sbjct:   59 PVASLEELADYDAILFGTPTRFGNMAGQMRNFLDQTGSLWFNGQLIGKVGSVFTSTGTGGGNE-----TTITSFWHTLAHHGMVIVGLSYA-APELADLSVVKGGSPYGAGTIAGGDGSRQPNEQELALARYQGRHVAEIAQRLHG 198          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: ALTA7_ALTAL (Minor allergen Alt a 7 OS=Alternaria alternata GN=ALTA7 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 9.161e-26
Identity = 63/128 (49.22%), Postives = 78/128 (60.94%), Query Frame = 2
Query:   14 PNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMF-EMEKVKGGSPYGAGTF-AGDGSRQPTELELEQAFHQGK 391
            P  L E DG +FG PTR+G   AQFK F D TG  W+     GK AG+F             A+T+++ LV HG I+VP+GY     M   +++V GGSP+GAGTF AGDGSRQP+ELEL  A  QGK
Sbjct:   66 PAVLEEFDGILFGIPTRYGNFPAQFKTFWDKTGKQWQQGAFWGKYAGVFVSTGTLGGGQETTAITSMSTLVDHGFIYVPLGYKTAFSMLANLDEVHGGSPWGAGTFSAGDGSRQPSELELNIAQAQGK 193          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_THICR (Flavoprotein wrbA OS=Thiomicrospira crunogena (strain XCL-2) GN=wrbA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.196e-25
Identity = 65/143 (45.45%), Postives = 82/143 (57.34%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHTAGIAKKLKGS 427
            PI TP+ELA+ D  +FG PTRFG M AQ + FLD TGGLW   +L  K   +F               +  T L H+GMI V + Y+    M  M ++ GG+PYGA T A GDGSRQP+E E++ A  QG H A +AKK   S
Sbjct:   60 PIATPSELADYDAIIFGTPTRFGNMCAQMRNFLDQTGGLWAGGKLINKVGSVFTSTGTQHGGQETTITSFHTNLFHYGMIVVGVPYSC-QEMTNMNEITGGTPYGASTLAGGDGSRQPSENEIKIAKCQGVHVAKVAKKQSAS 201          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_PHOLL (Flavoprotein wrbA OS=Photorhabdus luminescens subsp. laumondii GN=wrbA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.196e-25
Identity = 66/141 (46.81%), Postives = 83/141 (58.87%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHTAGIAKKLK 421
            P+ +  EL + D  + G PTRFG MA Q + FLD TGGLW   +L GK A +F               T  T L HHG I VPIGY     + ++ +++GG+PYGA T A GDGSR P E EL+ A +QG+H A IAKKLK
Sbjct:   60 PVASVQELVDYDAIIIGTPTRFGNMAGQMRNFLDQTGGLWAEGKLYGKVASVFTSTGVGGGQEMTITST-WTTLAHHGFIIVPIGYGI-PEIGDISQMQGGTPYGASTIADGDGSRIPNENELKIARYQGEHVAKIAKKLK 198          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: PST2_YEAST (Protoplast secreted protein 2 OS=Saccharomyces cerevisiae GN=PST2 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.196e-25
Identity = 65/132 (49.24%), Postives = 80/132 (60.61%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGY-TFGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGK 391
            PI T + L E D F+FG PTRFG   AQ+KAF D TGGLW    L GK AG F              + +++ L HHG+IFVP+GY    A +  M++V GGSP+GAGT AG DGSR P+ LEL+    QGK
Sbjct:   59 PIATQDTLTEYDAFLFGIPTRFGNFPAQWKAFWDRTGGLWAKGALHGKVAGCF-VSTGTGGGNEATIMNSLSTLAHHGIIFVPLGYKNVFAELTNMDEVHGGSPWGAGTIAGSDGSRSPSALELQVHEIQGK 189          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_GEOUR (Flavoprotein wrbA OS=Geobacter uraniireducens (strain Rf4) GN=wrbA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.041e-25
Identity = 62/140 (44.29%), Postives = 78/140 (55.71%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHTAGIAKKL 418
            P+ T  ELA+AD  +FG PTRFG M  Q + FLDATGGLW    L GK   +F              L+    L+H GM+ V + Y F  G    +++ GGSPYGA T AG  G R P+E +L  A +QGKH A IA +L
Sbjct:   63 PVCTIGELADADAIIFGTPTRFGNMCGQMRQFLDATGGLWMKGSLVGKLGSVFTSSATQHGGQESTILSFHITLLHQGMVVVGLPYAF-QGQMRNDEIIGGSPYGASTIAGTQGERSPSENDLAAARYQGKHVASIAARL 201          
BLAST of CB250343 vs. ExPASy Swiss-Prot
Match: WRBA_SYNFM (Flavoprotein wrbA OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=wrbA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.666e-25
Identity = 62/140 (44.29%), Postives = 82/140 (58.57%), Query Frame = 2
Query:    2 PIITPNELAEADGFVFGFPTRFGTMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHTAGIAKKL 418
            P+ T +EL  AD  +FG PTRFG MA Q + FLDATG LW +  L GK   +F              L+    L+H GM+ V + Y+F  G   M+++ GGSPYGA T AG  G+R P++ EL  A +QG+H A IA+KL
Sbjct:   63 PVCTVDELGAADAVIFGTPTRFGNMAGQMRQFLDATGRLWVSGALVGKAGSVFTSSNTQHGGQESTILSFHINLLHQGMVIVGLPYSF-QGQSTMDEITGGSPYGASTIAGPTGARTPSDNELAGARYQGRHVAEIARKL 201          
The following BLAST results are available for this feature:
BLAST of CB250343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
WRBA_BURS32.411e-2645.00Flavoprotein wrbA OS=Burkholderia sp. (strain 383)... [more]
YCP4_YEAST5.371e-2646.81Flavoprotein-like protein YCP4 OS=Saccharomyces ce... [more]
WRBA_RHISN5.371e-2643.57Flavoprotein wrbA OS=Rhizobium sp. (strain NGR234)... [more]
WRBA_HALHL7.015e-2646.58Flavoprotein wrbA OS=Halorhodospira halophila (str... [more]
ALTA7_ALTAL9.161e-2649.22Minor allergen Alt a 7 OS=Alternaria alternata GN=... [more]
WRBA_THICR1.196e-2545.45Flavoprotein wrbA OS=Thiomicrospira crunogena (str... [more]
WRBA_PHOLL1.196e-2546.81Flavoprotein wrbA OS=Photorhabdus luminescens subs... [more]
PST2_YEAST1.196e-2549.24Protoplast secreted protein 2 OS=Saccharomyces cer... [more]
WRBA_GEOUR2.041e-2544.29Flavoprotein wrbA OS=Geobacter uraniireducens (str... [more]
WRBA_SYNFM2.666e-2544.29Flavoprotein wrbA OS=Syntrophobacter fumaroxidans ... [more]

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Properties
Property NameValue
Genbank descriptionEST0133 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ197 similar to 1,4-benzoquinone reductase (acc# NP_194457), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250343 ID=CB250343; Name=CB250343; organism=Citrus sinensis; type=EST; length=481bp
ACCTATTATTACCCCCAACGAACTTGCTGAGGCTGATGGGTTTGTTTTTG
GCTTCCCAACAAGATTTGGAACGATGGCTGCTCAATTTAAAGCATTTTTA
GATGCTACTGGTGGTCTATGGAGGACACAACAGCTCGCTGGCAAACCTGC
TGGGATGTTCTACAGCACTGGGTCACAAGGTGGTGGACAAGAGACTACAG
CGTTGACGGCAATTACTCAGCTTGTTCACCATGGGATGATATTTGTTCCT
ATTGGATACACATTTGGTGCTGGCATGTTTGAGATGGAGAAAGTGAAAGG
TGGAAGTCCCTACGGTGCAGGAACTTTTGCTGGAGACGGCTCGAGACAGC
CAACTGAGCTTGAGTTGGAGCAAGCTTTCCACCAGGGAAAACACACTGCG
GGCATTGCAAAGAAGCTGAAGGGAAGTGCTTAAATATTTCAATTTACAAT
ACAACCATTAGGTGGACTTATTCCATTCTTT
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